Wall clock time and date at job start Wed Apr 1 2020 04:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46886 * 2 1 4 4 O 1.21294 * 119.99888 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.39961 * 119.99806 * 184.62162 * 5 3 2 7 7 C 1.38986 * 119.99413 * 144.88721 * 6 5 3 8 8 C 1.38215 * 120.21712 * 180.02562 * 7 6 5 9 9 C 1.38016 * 120.22776 * 359.97438 * 8 7 6 10 10 C 1.39582 * 119.99306 * 359.97438 * 9 8 7 11 11 C 1.47859 * 120.10944 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99707 * 179.97438 * 11 10 9 13 13 N 1.34771 * 120.00300 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00493 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47597 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.47155 * 64.99790 * 15 14 13 17 17 N 1.46504 * 109.47017 * 305.00431 * 15 14 13 18 18 C 1.36935 * 120.00001 * 154.99920 * 17 15 14 19 19 H 1.07998 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00036 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99936 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46901 * 90.00357 * 22 20 18 24 24 H 1.48499 * 109.46581 * 210.00180 * 22 20 18 25 25 H 1.48497 * 109.47062 * 330.00092 * 22 20 18 26 26 C 1.52996 * 109.47461 * 185.00385 * 15 14 13 27 27 C 1.53002 * 117.50012 * 248.75126 * 26 15 14 28 28 C 1.52998 * 117.50117 * 180.08802 * 26 15 14 29 29 C 1.38590 * 119.99808 * 324.91067 * 6 5 3 30 30 H 1.08997 * 109.47485 * 60.00267 * 1 2 3 31 31 H 1.09003 * 109.46613 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47151 * 299.99496 * 1 2 3 33 33 H 1.09001 * 109.47151 * 240.00504 * 2 1 3 34 34 H 1.08997 * 109.47485 * 119.99733 * 2 1 3 35 35 H 0.96995 * 119.99950 * 4.62071 * 5 3 2 36 36 H 1.07992 * 119.89574 * 0.02562 * 7 6 5 37 37 H 1.08006 * 119.88486 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.00363 * 179.97438 * 9 8 7 39 39 H 0.97003 * 120.00264 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.47398 * 300.00692 * 14 13 11 41 41 H 1.09003 * 109.46954 * 59.99925 * 14 13 11 42 42 H 0.96994 * 119.99937 * 334.99262 * 17 15 14 43 43 H 0.97001 * 119.99827 * 179.97438 * 21 20 18 44 44 H 1.08999 * 115.55094 * 34.41413 * 26 15 14 45 45 H 1.09007 * 117.49640 * 359.97438 * 27 26 15 46 46 H 1.09001 * 117.50291 * 145.01604 * 27 26 15 47 47 H 1.08999 * 117.49963 * 214.97348 * 28 26 15 48 48 H 1.08993 * 117.49928 * 359.97438 * 28 26 15 49 49 H 1.08005 * 120.11561 * 359.70188 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3428 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8245 2.9830 0.0971 7 6 4.9950 3.2546 0.7956 8 6 5.4603 4.5523 0.8954 9 6 4.7661 5.5869 0.3018 10 6 3.5901 5.3243 -0.4028 11 6 2.8446 6.4307 -1.0403 12 8 1.8210 6.1997 -1.6538 13 7 3.3000 7.6953 -0.9412 14 6 2.5617 8.7915 -1.5733 15 6 3.2876 10.1127 -1.3120 16 1 4.2593 10.0972 -1.8056 17 7 3.4752 10.2899 0.1301 18 6 4.4960 11.0746 0.5964 19 1 5.1630 11.5625 -0.0989 20 6 4.6735 11.2429 1.9628 21 7 3.8603 10.6487 2.8102 22 14 6.0656 12.3140 2.5989 23 1 5.5888 13.7132 2.7399 24 1 6.5146 11.8083 3.9210 25 1 7.1999 12.2716 1.6414 26 6 2.4536 11.2706 -1.8638 27 6 3.0021 12.0195 -3.0801 28 6 3.0139 12.6850 -1.7016 29 6 3.1197 4.0148 -0.5022 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9872 0.9327 -0.0686 36 1 5.5428 2.4492 1.2619 37 1 6.3707 4.7572 1.4392 38 1 5.1327 6.5996 0.3824 39 1 4.1171 7.8797 -0.4519 40 1 2.5011 8.6169 -2.6475 41 1 1.5559 8.8403 -1.1559 42 1 2.8764 9.8515 0.7546 43 1 3.9846 10.7660 3.7650 44 1 1.3729 11.1464 -1.7946 45 1 3.9573 11.6875 -3.4868 46 1 2.2823 12.3883 -3.8108 47 1 2.3019 13.4914 -1.5261 48 1 3.9765 12.7907 -1.2013 49 1 2.2123 3.8051 -1.0492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265358988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:27 Heat of formation + Delta-G solvation = -33.730520 kcal Electronic energy + Delta-G solvation = -29616.769952 eV Core-core repulsion = 25543.771985 eV Total energy + Delta-G solvation = -4072.997967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.76309 -40.86704 -39.35659 -38.83179 -36.18357 -35.89123 -35.17469 -33.81513 -32.88170 -32.09967 -30.75535 -29.53274 -26.03552 -25.77354 -24.97844 -23.46279 -23.35367 -23.01960 -21.63478 -21.26360 -20.98808 -19.61274 -18.95967 -18.26628 -17.40884 -17.23132 -16.96471 -16.84075 -16.70601 -16.27466 -16.01094 -15.63275 -15.42581 -15.30736 -15.13342 -14.88330 -14.70075 -14.39650 -14.29442 -13.87169 -13.53048 -13.19664 -12.99322 -12.92005 -12.87328 -12.77156 -12.67100 -12.56993 -12.41820 -12.26102 -12.04171 -11.97915 -11.72436 -11.52905 -11.18364 -11.00787 -10.88196 -10.86673 -10.76678 -10.21451 -9.90365 -9.24922 -9.00090 -7.86784 -5.15488 -0.21349 0.26587 1.50213 1.50296 1.52003 1.58987 1.84209 1.97842 2.22846 2.58837 2.84526 3.07407 3.48783 3.61941 3.73156 3.76156 3.92014 3.97946 4.08596 4.15423 4.18582 4.20374 4.26101 4.32612 4.38050 4.42462 4.47144 4.56230 4.64776 4.72984 4.82364 4.89528 4.89888 4.97167 5.04158 5.12912 5.15443 5.19521 5.27012 5.31330 5.36714 5.39772 5.40453 5.45260 5.49572 5.62629 5.92059 6.31556 6.41408 6.51354 7.14111 7.15963 7.39748 8.09577 8.36195 9.35907 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.002540 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.720318 B =11021.299649 C =12428.614425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.495 3.505 4 O -0.571 6.571 5 N -0.659 5.659 6 C 0.125 3.875 7 C -0.101 4.101 8 C -0.102 4.102 9 C -0.101 4.101 10 C -0.137 4.137 11 C 0.549 3.451 12 O -0.587 6.587 13 N -0.701 5.701 14 C 0.126 3.874 15 C 0.199 3.801 16 H 0.062 0.938 17 N -0.724 5.724 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.961 3.039 23 H -0.296 1.296 24 H -0.301 1.301 25 H -0.267 1.267 26 C -0.176 4.176 27 C -0.161 4.161 28 C -0.172 4.172 29 C -0.088 4.088 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.434 0.566 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.131 0.869 39 H 0.412 0.588 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.371 0.629 43 H 0.247 0.753 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 -22.245 -7.473 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.286 3.714 4 O -0.449 6.449 5 N -0.306 5.306 6 C 0.031 3.969 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.121 4.121 10 C -0.141 4.141 11 C 0.337 3.663 12 O -0.469 6.469 13 N -0.352 5.352 14 C 0.001 3.999 15 C 0.090 3.910 16 H 0.080 0.920 17 N -0.363 5.363 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.792 3.208 23 H -0.224 1.224 24 H -0.228 1.228 25 H -0.192 1.192 26 C -0.197 4.197 27 C -0.199 4.199 28 C -0.209 4.209 29 C -0.110 4.110 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.275 0.725 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.149 0.851 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.203 0.797 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.610 -21.697 -7.903 23.372 hybrid contribution 0.412 0.933 1.095 1.497 sum 4.022 -20.764 -6.808 22.219 Atomic orbital electron populations 1.21585 0.94053 1.02856 1.01584 1.21710 0.97672 0.89832 1.07558 1.22063 0.81537 0.93828 0.74013 1.90800 1.56504 1.48351 1.49252 1.43450 1.08131 1.06367 1.72697 1.17734 0.95829 0.85004 0.98359 1.21502 0.95235 0.98586 0.96813 1.21328 1.00781 0.91339 0.98564 1.21555 0.93327 1.01077 0.96094 1.19779 0.97735 0.93150 1.03391 1.18695 0.84261 0.83614 0.79710 1.90705 1.26387 1.84843 1.45001 1.45846 1.28967 1.05704 1.54717 1.21539 0.94948 0.85633 0.97731 1.20137 0.95914 0.89860 0.85099 0.92039 1.42582 1.35158 1.57718 1.00857 1.19455 1.04879 1.20285 0.90323 0.90315 1.25392 1.01563 1.02747 0.96565 1.69826 1.41232 1.49457 1.01286 0.85317 0.79885 0.78218 0.77391 1.22432 1.22786 1.19171 1.22905 0.99238 0.94773 1.02805 1.23044 1.02930 1.03408 0.90473 1.22745 1.02808 0.95287 1.00080 1.21200 0.99883 0.91514 0.98378 0.94050 0.88991 0.93994 0.85407 0.85278 0.72549 0.80689 0.81614 0.85080 0.75027 0.90137 0.93357 0.79689 0.94400 0.89109 0.88404 0.87571 0.89613 0.89832 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 71.98 0.66 -1.37 16 2 C -0.13 -1.24 6.42 29.85 0.19 -1.05 16 3 C 0.50 10.23 7.67 87.66 0.67 10.90 16 4 O -0.57 -19.25 13.42 -3.07 -0.04 -19.29 16 5 N -0.66 -10.45 5.34 -303.59 -1.62 -12.07 16 6 C 0.13 2.91 6.29 38.11 0.24 3.15 16 7 C -0.10 -1.74 9.96 22.44 0.22 -1.51 16 8 C -0.10 -2.06 10.02 22.21 0.22 -1.83 16 9 C -0.10 -2.82 9.54 22.54 0.21 -2.61 16 10 C -0.14 -4.70 5.87 -20.10 -0.12 -4.82 16 11 C 0.55 21.95 7.77 86.79 0.67 22.63 16 12 O -0.59 -27.50 16.35 -3.87 -0.06 -27.56 16 13 N -0.70 -26.02 5.34 -465.97 -2.49 -28.50 16 14 C 0.13 4.62 5.22 86.38 0.45 5.07 16 15 C 0.20 7.47 2.70 44.99 0.12 7.59 16 16 H 0.06 2.26 7.84 -2.39 -0.02 2.24 16 17 N -0.72 -33.73 4.54 -322.95 -1.47 -35.20 16 18 C -0.22 -11.01 8.63 84.03 0.73 -10.28 16 19 H 0.08 3.82 6.91 -2.91 -0.02 3.80 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.97 -57.16 13.06 21.65 0.28 -56.87 16 22 Si 0.96 44.30 29.55 68.60 2.03 46.32 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C -0.18 -6.09 5.36 -10.79 -0.06 -6.14 16 27 C -0.16 -4.53 10.18 30.62 0.31 -4.22 16 28 C -0.17 -5.95 9.78 30.62 0.30 -5.65 16 29 C -0.09 -2.94 8.23 22.66 0.19 -2.75 16 30 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.43 2.40 8.82 -92.71 -0.82 1.58 16 36 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 38 H 0.13 3.66 6.40 -2.91 -0.02 3.64 16 39 H 0.41 14.85 6.17 -92.71 -0.57 14.28 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.37 19.51 7.80 -92.71 -0.72 18.78 16 43 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.09 3.15 8.11 -2.39 -0.02 3.13 16 45 H 0.10 2.57 8.05 -2.38 -0.02 2.55 16 46 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 48 H 0.08 3.25 6.23 -2.39 -0.01 3.24 16 49 H 0.12 4.67 5.82 -2.91 -0.02 4.65 16 Total: -1.00 -79.57 407.03 1.01 -78.57 By element: Atomic # 1 Polarization: 51.96 SS G_CDS: -1.11 Total: 50.85 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.49 Total: 3.75 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.29 Total: -132.65 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.10 Total: -46.85 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -79.57 1.01 -78.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265358988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.836 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds