Wall clock time and date at job start Wed Apr 1 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.00860 * 2 1 4 4 C 1.51133 * 109.95477 * 238.75536 * 2 1 3 5 5 C 1.34214 * 127.59312 * 71.41713 * 4 2 1 6 6 C 1.41056 * 107.28243 * 180.58813 * 5 4 2 7 7 C 1.34966 * 107.46436 * 359.54712 * 6 5 4 8 8 N 1.36093 * 108.27031 * 0.09130 * 7 6 5 9 9 C 1.46704 * 126.93303 * 180.51953 * 8 7 6 10 10 C 1.53216 * 109.23708 * 198.62195 * 9 8 7 11 11 N 1.47058 * 109.29538 * 313.69751 * 10 9 8 12 12 C 1.34782 * 120.98136 * 244.10914 * 11 10 9 13 13 O 1.21349 * 119.99654 * 174.96987 * 12 11 10 14 14 C 1.49448 * 120.00006 * 354.97096 * 12 11 10 15 15 O 1.21351 * 119.99517 * 85.40521 * 14 12 11 16 16 N 1.34773 * 120.00182 * 265.40743 * 14 12 11 17 17 C 1.46928 * 120.62950 * 5.04919 * 16 14 12 18 18 C 1.53190 * 108.77519 * 233.58829 * 17 16 14 19 19 C 1.53047 * 109.31198 * 305.36690 * 18 17 16 20 20 C 1.53042 * 109.53619 * 61.36753 * 19 18 17 21 21 H 1.08999 * 109.49405 * 58.58640 * 20 19 18 22 22 C 1.50704 * 109.49481 * 178.65159 * 20 19 18 23 23 H 1.08002 * 119.99696 * 359.97438 * 22 20 19 24 24 C 1.37870 * 119.99957 * 180.02562 * 22 20 19 25 25 N 1.31512 * 119.99938 * 359.97438 * 24 22 20 26 26 Si 1.86801 * 120.00251 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46994 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47314 * 119.99594 * 26 24 22 29 29 H 1.48495 * 109.47236 * 240.00388 * 26 24 22 30 30 C 1.46923 * 120.62757 * 184.77410 * 16 14 12 31 31 H 1.08993 * 109.47777 * 298.76901 * 1 2 3 32 32 H 1.09007 * 109.46792 * 58.77165 * 1 2 3 33 33 H 1.09006 * 109.47106 * 178.76550 * 1 2 3 34 34 H 1.07998 * 126.36179 * 0.44332 * 5 4 2 35 35 H 1.07995 * 126.26703 * 179.79816 * 6 5 4 36 36 H 1.07998 * 125.86604 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.51257 * 318.55115 * 9 8 7 38 38 H 1.09005 * 109.50701 * 78.69445 * 9 8 7 39 39 H 1.08997 * 109.50437 * 73.64524 * 10 9 8 40 40 H 1.08998 * 109.50489 * 193.75564 * 10 9 8 41 41 H 1.08998 * 109.58568 * 353.37577 * 17 16 14 42 42 H 1.09004 * 109.57921 * 113.65953 * 17 16 14 43 43 H 1.08998 * 109.50042 * 65.31630 * 18 17 16 44 44 H 1.09004 * 109.49398 * 185.41712 * 18 17 16 45 45 H 1.09004 * 109.45792 * 181.39060 * 19 18 17 46 46 H 1.09003 * 109.45803 * 301.35925 * 19 18 17 47 47 H 0.97000 * 119.99917 * 179.97438 * 25 24 22 48 48 H 1.08997 * 109.58482 * 246.19549 * 30 16 14 49 49 H 1.08996 * 109.59219 * 6.62495 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0458 -0.7369 -1.2145 5 6 2.0066 -0.3342 -2.4943 6 6 2.5924 -1.3544 -3.2726 7 6 2.9754 -2.3371 -2.4305 8 7 2.6474 -1.9649 -1.1632 9 6 2.8881 -2.7241 0.0688 10 6 1.9772 -2.1883 1.1781 11 7 2.0332 -0.7188 1.1854 12 6 2.5301 -0.0486 2.2440 13 8 2.6526 1.1577 2.1953 14 6 2.9301 -0.7912 3.4777 15 8 4.0383 -1.2789 3.5597 16 7 2.0602 -0.9192 4.4991 17 6 0.6801 -0.4314 4.3725 18 6 0.3802 0.5091 5.5440 19 6 0.6732 -0.2134 6.8610 20 6 2.1539 -0.5966 6.9160 21 1 2.7655 0.3012 6.8273 22 6 2.4485 -1.2785 8.2273 23 1 1.6589 -1.4239 8.9497 24 6 3.7261 -1.7159 8.5050 25 7 4.6877 -1.5384 7.6255 26 14 4.0916 -2.5605 10.1306 27 1 2.8484 -2.6364 10.9394 28 1 4.5994 -3.9319 9.8728 29 1 5.1173 -1.7840 10.8723 30 6 2.4723 -1.5547 5.7581 31 1 -0.3634 0.4945 0.9007 32 1 -0.3633 0.5328 -0.8788 33 1 -0.3634 -1.0275 -0.0221 34 1 1.5999 0.5968 -2.8604 35 1 2.7159 -1.3482 -4.3455 36 1 3.4582 -3.2607 -2.7137 37 1 2.6696 -3.7779 -0.1044 38 1 3.9304 -2.6121 0.3676 39 1 0.9526 -2.5124 0.9961 40 1 2.3143 -2.5699 2.1419 41 1 0.5682 0.1088 3.4324 42 1 -0.0091 -1.2756 4.3932 43 1 1.0086 1.3965 5.4683 44 1 -0.6693 0.8024 5.5156 45 1 0.4372 0.4452 7.6968 46 1 0.0626 -1.1141 6.9247 47 1 5.5866 -1.8457 7.8211 48 1 1.9260 -2.4883 5.8920 49 1 3.5432 -1.7560 5.7325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327625073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:44 Heat of formation + Delta-G solvation = -7.497288 kcal Electronic energy + Delta-G solvation = -31751.755346 eV Core-core repulsion = 27679.894938 eV Total energy + Delta-G solvation = -4071.860408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86546 -40.45564 -38.57112 -36.86041 -36.55001 -33.97273 -33.48806 -31.96346 -31.46512 -29.93461 -28.79335 -28.12239 -26.22590 -25.14424 -23.97508 -23.92725 -22.05653 -21.92153 -20.77095 -19.76945 -18.81745 -18.18800 -17.85394 -17.13539 -16.87430 -16.24334 -16.05526 -15.79347 -14.82980 -14.76187 -14.55786 -14.37944 -14.04066 -13.85162 -13.82368 -13.64798 -13.24502 -13.11173 -12.92905 -12.73426 -12.61787 -12.38472 -12.30192 -12.24662 -12.07851 -12.05466 -11.82666 -11.48060 -11.11642 -11.10806 -10.99754 -10.57827 -10.47294 -10.32978 -10.03336 -9.37024 -9.24061 -9.18778 -8.95308 -8.73492 -8.53299 -8.18694 -8.02649 -6.07815 -4.16622 2.06791 2.15010 2.22661 2.76292 2.82387 2.88745 3.25443 3.34239 3.36873 3.54879 4.19635 4.20864 4.36444 4.41974 4.60429 4.72783 4.89023 4.94184 5.05223 5.11727 5.15468 5.22839 5.32288 5.36710 5.40230 5.43799 5.45104 5.53819 5.61600 5.83665 5.88646 5.96067 6.07610 6.11582 6.21064 6.22347 6.45439 6.54573 6.72015 6.83249 6.85461 6.90220 6.93420 7.01226 7.04135 7.19980 7.48001 7.73626 7.76540 7.82623 7.97271 8.23547 8.39102 8.87797 9.49635 10.97852 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.002920 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.548899 B = 9587.620241 C =10389.316411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.208 3.792 3 H 0.117 0.883 4 C 0.007 3.993 5 C -0.184 4.184 6 C -0.203 4.203 7 C -0.008 4.008 8 N -0.443 5.443 9 C 0.089 3.911 10 C 0.097 3.903 11 N -0.607 5.607 12 C 0.524 3.476 13 O -0.506 6.506 14 C 0.506 3.494 15 O -0.511 6.511 16 N -0.584 5.584 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.111 4.111 20 C 0.039 3.961 21 H 0.032 0.968 22 C -0.520 4.520 23 H 0.060 0.940 24 C 0.062 3.938 25 N -0.881 5.881 26 Si 0.893 3.107 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.284 1.284 30 C 0.111 3.889 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.264 0.736 48 H 0.051 0.949 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -2.377 -18.528 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.105 3.895 3 H 0.134 0.866 4 C -0.105 4.105 5 C -0.209 4.209 6 C -0.228 4.228 7 C -0.138 4.138 8 N -0.119 5.119 9 C -0.033 4.033 10 C -0.027 4.027 11 N -0.344 5.344 12 C 0.308 3.692 13 O -0.379 6.379 14 C 0.286 3.714 15 O -0.386 6.386 16 N -0.317 5.317 17 C -0.016 4.016 18 C -0.172 4.172 19 C -0.148 4.148 20 C 0.019 3.981 21 H 0.050 0.950 22 C -0.558 4.558 23 H 0.079 0.921 24 C -0.141 4.141 25 N -0.519 5.519 26 Si 0.721 3.279 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.008 4.008 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.240 -2.225 -18.150 20.488 hybrid contribution 0.390 -0.551 0.740 1.002 sum -8.850 -2.776 -17.410 19.727 Atomic orbital electron populations 1.22079 0.93032 1.02751 1.03132 1.19961 0.94243 0.96457 0.78821 0.86567 1.20419 1.05646 0.88450 0.95960 1.20415 1.08147 1.01036 0.91315 1.20884 1.07528 0.95426 0.98912 1.21748 1.07705 1.01795 0.82569 1.44065 1.46000 1.15562 1.06271 1.22332 1.01845 0.96322 0.82801 1.21980 1.00698 0.79966 1.00069 1.48380 1.62062 1.06760 1.17187 1.20857 0.76063 0.88013 0.84280 1.90779 1.51725 1.13417 1.81965 1.19919 0.86237 0.81052 0.84164 1.90835 1.20261 1.46874 1.80671 1.48638 1.10557 1.57104 1.15425 1.21725 0.83051 0.97830 0.98953 1.21943 1.00579 0.98713 0.95966 1.21640 0.99904 0.98816 0.94466 1.19078 0.90318 0.95461 0.93201 0.95012 1.21099 0.94712 1.38944 1.01081 0.92139 1.25066 0.96320 0.95784 0.96902 1.69883 1.01629 1.45952 1.34387 0.86514 0.78348 0.79246 0.83781 1.19754 1.20951 1.20969 1.22589 1.04489 0.94944 0.78801 0.91412 0.90501 0.92157 0.84557 0.84635 0.82164 0.88041 0.89140 0.89338 0.87364 0.91643 0.91181 0.91727 0.91870 0.92677 0.93016 0.92600 0.93083 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.43 37.16 0.35 -0.99 16 2 C 0.21 2.42 3.24 -68.33 -0.22 2.20 16 3 H 0.12 1.51 7.19 -51.93 -0.37 1.13 16 4 C 0.01 0.08 5.96 -81.56 -0.49 -0.40 16 5 C -0.18 -2.02 10.81 -39.93 -0.43 -2.45 16 6 C -0.20 -2.09 10.87 -39.68 -0.43 -2.52 16 7 C -0.01 -0.08 11.49 -16.82 -0.19 -0.28 16 8 N -0.44 -4.88 3.15 -112.17 -0.35 -5.23 16 9 C 0.09 0.86 7.12 -3.82 -0.03 0.84 16 10 C 0.10 1.02 6.21 -3.63 -0.02 1.00 16 11 N -0.61 -8.01 2.63 -166.37 -0.44 -8.44 16 12 C 0.52 9.09 5.48 -11.58 -0.06 9.03 16 13 O -0.51 -10.08 16.63 5.50 0.09 -9.99 16 14 C 0.51 10.06 5.53 -11.59 -0.06 10.00 16 15 O -0.51 -11.98 16.49 5.50 0.09 -11.89 16 16 N -0.58 -11.17 2.97 -173.01 -0.51 -11.68 16 17 C 0.11 1.63 6.35 -3.71 -0.02 1.61 16 18 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 19 C -0.11 -2.10 5.10 -26.69 -0.14 -2.24 16 20 C 0.04 0.92 2.26 -91.42 -0.21 0.71 16 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.52 -13.56 8.56 -34.44 -0.29 -13.86 16 23 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 24 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 25 N -0.88 -25.01 11.41 55.43 0.63 -24.37 16 26 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C 0.11 2.52 5.42 -3.49 -0.02 2.50 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.73 7.50 -51.93 -0.39 0.34 16 40 H 0.11 1.27 6.31 -51.93 -0.33 0.95 16 41 H 0.07 0.91 6.31 -51.93 -0.33 0.58 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.12 3.32 5.18 -51.93 -0.27 3.05 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -32.63 389.15 -9.71 -42.34 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.54 Total: 3.31 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -2.53 Total: 4.43 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.67 Total: -49.73 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.63 -9.71 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327625073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.843 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds