Wall clock time and date at job start Wed Apr 1 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.00860 * 2 1 4 4 C 1.51133 * 109.95477 * 238.75536 * 2 1 3 5 5 C 1.34214 * 127.59312 * 71.41713 * 4 2 1 6 6 C 1.41056 * 107.28243 * 180.58813 * 5 4 2 7 7 C 1.34966 * 107.46436 * 359.54712 * 6 5 4 8 8 N 1.36093 * 108.27031 * 0.09130 * 7 6 5 9 9 C 1.46704 * 126.93303 * 180.51953 * 8 7 6 10 10 C 1.53216 * 109.23708 * 198.62195 * 9 8 7 11 11 N 1.47058 * 109.29538 * 313.69751 * 10 9 8 12 12 C 1.34782 * 120.98136 * 244.10914 * 11 10 9 13 13 O 1.21349 * 119.99654 * 174.96987 * 12 11 10 14 14 C 1.49448 * 120.00006 * 354.97096 * 12 11 10 15 15 O 1.21351 * 119.99517 * 85.40521 * 14 12 11 16 16 N 1.34773 * 120.00182 * 265.40743 * 14 12 11 17 17 C 1.46928 * 120.62950 * 5.04919 * 16 14 12 18 18 C 1.53190 * 108.77519 * 233.58829 * 17 16 14 19 19 C 1.53047 * 109.31198 * 305.36690 * 18 17 16 20 20 C 1.53042 * 109.53619 * 61.36753 * 19 18 17 21 21 H 1.08999 * 109.49405 * 58.58640 * 20 19 18 22 22 C 1.50704 * 109.49481 * 178.65159 * 20 19 18 23 23 H 1.08002 * 119.99696 * 359.97438 * 22 20 19 24 24 C 1.37870 * 119.99957 * 180.02562 * 22 20 19 25 25 N 1.31512 * 119.99938 * 359.97438 * 24 22 20 26 26 Si 1.86801 * 120.00251 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46994 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47314 * 119.99594 * 26 24 22 29 29 H 1.48495 * 109.47236 * 240.00388 * 26 24 22 30 30 C 1.46923 * 120.62757 * 184.77410 * 16 14 12 31 31 H 1.08993 * 109.47777 * 298.76901 * 1 2 3 32 32 H 1.09007 * 109.46792 * 58.77165 * 1 2 3 33 33 H 1.09006 * 109.47106 * 178.76550 * 1 2 3 34 34 H 1.07998 * 126.36179 * 0.44332 * 5 4 2 35 35 H 1.07995 * 126.26703 * 179.79816 * 6 5 4 36 36 H 1.07998 * 125.86604 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.51257 * 318.55115 * 9 8 7 38 38 H 1.09005 * 109.50701 * 78.69445 * 9 8 7 39 39 H 1.08997 * 109.50437 * 73.64524 * 10 9 8 40 40 H 1.08998 * 109.50489 * 193.75564 * 10 9 8 41 41 H 1.08998 * 109.58568 * 353.37577 * 17 16 14 42 42 H 1.09004 * 109.57921 * 113.65953 * 17 16 14 43 43 H 1.08998 * 109.50042 * 65.31630 * 18 17 16 44 44 H 1.09004 * 109.49398 * 185.41712 * 18 17 16 45 45 H 1.09004 * 109.45792 * 181.39060 * 19 18 17 46 46 H 1.09003 * 109.45803 * 301.35925 * 19 18 17 47 47 H 0.97000 * 119.99917 * 179.97438 * 25 24 22 48 48 H 1.08997 * 109.58482 * 246.19549 * 30 16 14 49 49 H 1.08996 * 109.59219 * 6.62495 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0458 -0.7369 -1.2145 5 6 2.0066 -0.3342 -2.4943 6 6 2.5924 -1.3544 -3.2726 7 6 2.9754 -2.3371 -2.4305 8 7 2.6474 -1.9649 -1.1632 9 6 2.8881 -2.7241 0.0688 10 6 1.9772 -2.1883 1.1781 11 7 2.0332 -0.7188 1.1854 12 6 2.5301 -0.0486 2.2440 13 8 2.6526 1.1577 2.1953 14 6 2.9301 -0.7912 3.4777 15 8 4.0383 -1.2789 3.5597 16 7 2.0602 -0.9192 4.4991 17 6 0.6801 -0.4314 4.3725 18 6 0.3802 0.5091 5.5440 19 6 0.6732 -0.2134 6.8610 20 6 2.1539 -0.5966 6.9160 21 1 2.7655 0.3012 6.8273 22 6 2.4485 -1.2785 8.2273 23 1 1.6589 -1.4239 8.9497 24 6 3.7261 -1.7159 8.5050 25 7 4.6877 -1.5384 7.6255 26 14 4.0916 -2.5605 10.1306 27 1 2.8484 -2.6364 10.9394 28 1 4.5994 -3.9319 9.8728 29 1 5.1173 -1.7840 10.8723 30 6 2.4723 -1.5547 5.7581 31 1 -0.3634 0.4945 0.9007 32 1 -0.3633 0.5328 -0.8788 33 1 -0.3634 -1.0275 -0.0221 34 1 1.5999 0.5968 -2.8604 35 1 2.7159 -1.3482 -4.3455 36 1 3.4582 -3.2607 -2.7137 37 1 2.6696 -3.7779 -0.1044 38 1 3.9304 -2.6121 0.3676 39 1 0.9526 -2.5124 0.9961 40 1 2.3143 -2.5699 2.1419 41 1 0.5682 0.1088 3.4324 42 1 -0.0091 -1.2756 4.3932 43 1 1.0086 1.3965 5.4683 44 1 -0.6693 0.8024 5.5156 45 1 0.4372 0.4452 7.6968 46 1 0.0626 -1.1141 6.9247 47 1 5.5866 -1.8457 7.8211 48 1 1.9260 -2.4883 5.8920 49 1 3.5432 -1.7560 5.7325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327625073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:43 Heat of formation + Delta-G solvation = -27.042620 kcal Electronic energy + Delta-G solvation = -31752.602895 eV Core-core repulsion = 27679.894938 eV Total energy + Delta-G solvation = -4072.707957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.78772 -41.78660 -39.99880 -38.48982 -37.66652 -35.36149 -34.78913 -33.60619 -32.45128 -31.64051 -29.66753 -28.88652 -27.80663 -26.88019 -25.21944 -24.82117 -23.58199 -23.17227 -21.64734 -21.16354 -20.10983 -19.27497 -19.13038 -18.31852 -18.18697 -17.95330 -17.45021 -16.81670 -16.56655 -15.93943 -15.83234 -15.77037 -15.33163 -15.14435 -14.90260 -14.73972 -14.54409 -14.42514 -14.15562 -14.02217 -13.92316 -13.66046 -13.40115 -13.16003 -13.05123 -12.93011 -12.87340 -12.84480 -12.72920 -12.46363 -12.32933 -12.26638 -12.24106 -11.87958 -11.71018 -11.15014 -10.99524 -10.65590 -10.54500 -10.26544 -9.66703 -9.53563 -8.98356 -8.12758 -6.29323 0.82611 0.92951 1.26363 1.27168 1.41053 1.43127 1.54373 1.88325 2.09992 2.28247 2.42153 2.98272 3.16811 3.38208 3.45650 3.75438 3.87670 3.93856 4.05980 4.11574 4.17929 4.24434 4.28585 4.34802 4.49705 4.52425 4.64365 4.65072 4.69315 4.69497 4.73268 4.75810 4.85018 5.02825 5.07572 5.14072 5.20090 5.21096 5.27860 5.35100 5.39554 5.42172 5.57509 5.71179 5.85095 5.92975 6.07413 6.23004 6.24331 6.29435 6.43564 6.46112 6.75549 6.85786 7.41375 8.91412 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.002920 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.548899 B = 9587.620241 C =10389.316411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.207 3.793 3 H 0.097 0.903 4 C -0.015 4.015 5 C -0.191 4.191 6 C -0.216 4.216 7 C -0.009 4.009 8 N -0.450 5.450 9 C 0.090 3.910 10 C 0.091 3.909 11 N -0.592 5.592 12 C 0.532 3.468 13 O -0.541 6.541 14 C 0.501 3.499 15 O -0.559 6.559 16 N -0.582 5.582 17 C 0.104 3.896 18 C -0.128 4.128 19 C -0.103 4.103 20 C 0.034 3.966 21 H -0.018 1.018 22 C -0.530 4.530 23 H 0.066 0.934 24 C 0.010 3.990 25 N -0.917 5.917 26 Si 0.958 3.042 27 H -0.259 1.259 28 H -0.281 1.281 29 H -0.287 1.287 30 C 0.125 3.875 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.187 0.813 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.109 0.891 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.260 0.740 48 H 0.061 0.939 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 -3.714 -19.825 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.105 3.895 3 H 0.115 0.885 4 C -0.127 4.127 5 C -0.216 4.216 6 C -0.241 4.241 7 C -0.139 4.139 8 N -0.127 5.127 9 C -0.031 4.031 10 C -0.031 4.031 11 N -0.327 5.327 12 C 0.315 3.685 13 O -0.417 6.417 14 C 0.283 3.717 15 O -0.438 6.438 16 N -0.314 5.314 17 C -0.018 4.018 18 C -0.166 4.166 19 C -0.141 4.141 20 C 0.015 3.985 21 H 0.000 1.000 22 C -0.568 4.568 23 H 0.085 0.915 24 C -0.190 4.190 25 N -0.556 5.556 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.207 1.207 29 H -0.214 1.214 30 C 0.004 3.996 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.204 0.796 37 H 0.156 0.844 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.127 0.873 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.395 -3.576 -19.478 23.363 hybrid contribution 1.360 -0.127 1.069 1.735 sum -11.035 -3.703 -18.409 21.780 Atomic orbital electron populations 1.22042 0.90313 1.03758 1.03954 1.20125 0.96183 0.95274 0.77907 0.88522 1.20491 1.06998 0.89127 0.96053 1.20707 1.07920 1.01664 0.91300 1.21205 1.07570 0.95338 0.99947 1.22261 1.06903 1.02663 0.82041 1.44218 1.46090 1.15535 1.06871 1.22385 1.00456 0.98155 0.82146 1.22241 1.02931 0.78023 0.99917 1.48403 1.59987 1.08075 1.16218 1.20239 0.76534 0.87287 0.84399 1.90765 1.53851 1.14528 1.82574 1.20439 0.85586 0.80460 0.85178 1.90799 1.22257 1.48965 1.81769 1.48622 1.12276 1.56500 1.13999 1.22072 0.81025 0.99200 0.99453 1.21914 1.02841 0.97479 0.94346 1.21522 0.96263 0.99919 0.96395 1.19035 0.93069 0.93403 0.92977 1.00030 1.21510 0.94844 1.38315 1.02155 0.91541 1.25891 0.96336 0.96621 1.00104 1.70082 1.01794 1.47381 1.36352 0.85498 0.78343 0.77974 0.79800 1.18287 1.20651 1.21371 1.22042 1.02032 0.95301 0.80231 0.91347 0.88881 0.91000 0.83440 0.82960 0.79574 0.84385 0.91163 0.85866 0.88768 0.89970 0.87504 0.94099 0.87292 0.92780 0.91178 0.93111 0.92039 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.43 71.98 0.68 -1.44 16 2 C 0.21 4.56 3.24 44.19 0.14 4.70 16 3 H 0.10 2.51 7.19 -2.39 -0.02 2.50 16 4 C -0.02 -0.33 5.96 41.00 0.24 -0.09 16 5 C -0.19 -3.86 10.81 22.04 0.24 -3.62 16 6 C -0.22 -3.97 10.87 22.21 0.24 -3.73 16 7 C -0.01 -0.16 11.49 83.28 0.96 0.80 16 8 N -0.45 -9.03 3.15 -508.80 -1.60 -10.63 16 9 C 0.09 1.60 7.12 86.41 0.62 2.21 16 10 C 0.09 1.77 6.21 86.35 0.54 2.31 16 11 N -0.59 -15.13 2.63 -798.62 -2.10 -17.22 16 12 C 0.53 18.75 5.48 87.27 0.48 19.23 16 13 O -0.54 -22.17 16.63 -3.24 -0.05 -22.23 16 14 C 0.50 20.69 5.53 87.27 0.48 21.17 16 15 O -0.56 -27.93 16.49 -3.25 -0.05 -27.98 16 16 N -0.58 -22.50 2.97 -819.66 -2.43 -24.93 16 17 C 0.10 2.91 6.35 86.36 0.55 3.46 16 18 C -0.13 -3.81 6.08 30.67 0.19 -3.62 16 19 C -0.10 -3.79 5.10 30.62 0.16 -3.64 16 20 C 0.03 1.68 2.26 -11.31 -0.03 1.66 16 21 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 22 C -0.53 -28.08 8.56 25.60 0.22 -27.86 16 23 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 24 C 0.01 0.54 5.30 84.65 0.45 0.98 16 25 N -0.92 -54.65 11.41 21.44 0.24 -54.40 16 26 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 30 C 0.13 5.86 5.42 86.51 0.47 6.32 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 0.92 7.52 -2.38 -0.02 0.90 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 39 H 0.12 1.59 7.50 -2.39 -0.02 1.57 16 40 H 0.09 2.16 6.31 -2.39 -0.02 2.15 16 41 H 0.08 2.08 6.31 -2.39 -0.02 2.07 16 42 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 48 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 49 H 0.08 4.49 5.18 -2.39 -0.01 4.48 16 Total: -1.00 -76.62 389.15 3.60 -73.03 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.95 Total: 20.38 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 6.62 Total: 18.86 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -5.89 Total: -107.20 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.11 Total: -50.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.62 3.60 -73.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327625073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.983 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds