Wall clock time and date at job start Wed Apr 1 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.00792 * 2 1 4 4 C 1.50766 * 109.78692 * 121.09063 * 2 1 3 5 5 C 1.34218 * 127.61595 * 289.09898 * 4 2 1 6 6 C 1.41047 * 107.28352 * 179.65116 * 5 4 2 7 7 C 1.34959 * 107.47129 * 0.08827 * 6 5 4 8 8 N 1.36096 * 108.26439 * 0.12758 * 7 6 5 9 9 C 1.46710 * 126.92964 * 179.56227 * 8 7 6 10 10 C 1.53215 * 109.23469 * 161.26493 * 9 8 7 11 11 N 1.47057 * 109.29016 * 46.32330 * 10 9 8 12 12 C 1.34772 * 120.98424 * 115.88307 * 11 10 9 13 13 O 1.21350 * 120.00562 * 185.03225 * 12 11 10 14 14 C 1.49453 * 119.99875 * 5.02740 * 12 11 10 15 15 O 1.21344 * 120.00468 * 274.67283 * 14 12 11 16 16 N 1.34779 * 119.99649 * 94.66947 * 14 12 11 17 17 C 1.46919 * 120.63184 * 354.97164 * 16 14 12 18 18 C 1.53197 * 108.77768 * 126.36904 * 17 16 14 19 19 C 1.53040 * 109.31264 * 54.63391 * 18 17 16 20 20 C 1.53041 * 109.53842 * 298.64002 * 19 18 17 21 21 H 1.08998 * 109.52336 * 301.39496 * 20 19 18 22 22 C 1.50704 * 109.49957 * 181.31658 * 20 19 18 23 23 H 1.08001 * 119.99827 * 0.15987 * 22 20 19 24 24 C 1.37877 * 120.00071 * 179.88673 * 22 20 19 25 25 N 1.31515 * 119.99958 * 0.27123 * 24 22 20 26 26 Si 1.86796 * 119.99858 * 180.27471 * 24 22 20 27 27 H 1.48497 * 109.47135 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47304 * 120.00005 * 26 24 22 29 29 H 1.48503 * 109.47084 * 239.99506 * 26 24 22 30 30 C 1.46926 * 120.63011 * 174.94737 * 16 14 12 31 31 H 1.09001 * 109.46943 * 181.23402 * 1 2 3 32 32 H 1.09004 * 109.47222 * 301.23157 * 1 2 3 33 33 H 1.08999 * 109.47160 * 61.23657 * 1 2 3 34 34 H 1.08000 * 126.35427 * 359.64899 * 5 4 2 35 35 H 1.08007 * 126.26239 * 180.10793 * 6 5 4 36 36 H 1.08006 * 125.86992 * 180.14390 * 7 6 5 37 37 H 1.09002 * 109.51379 * 41.33525 * 9 8 7 38 38 H 1.09002 * 109.55192 * 281.22141 * 9 8 7 39 39 H 1.09002 * 109.50336 * 286.38142 * 10 9 8 40 40 H 1.08997 * 109.53483 * 166.28230 * 10 9 8 41 41 H 1.08997 * 109.58922 * 246.15539 * 17 16 14 42 42 H 1.09000 * 109.58730 * 6.44292 * 17 16 14 43 43 H 1.08998 * 109.50145 * 174.58538 * 18 17 16 44 44 H 1.09001 * 109.49390 * 294.65649 * 18 17 16 45 45 H 1.08994 * 109.46091 * 178.61572 * 19 18 17 46 46 H 1.09004 * 109.46172 * 58.65574 * 19 18 17 47 47 H 0.97003 * 119.99894 * 180.02562 * 25 24 22 48 48 H 1.08998 * 109.58394 * 113.84134 * 30 16 14 49 49 H 1.08998 * 109.58557 * 353.42295 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0404 -0.7326 1.2149 5 6 1.9904 -0.3311 2.4946 6 6 2.5817 -1.3460 3.2756 7 6 2.9715 -2.3281 2.4360 8 7 2.6467 -1.9584 1.1671 9 6 2.8934 -2.7188 -0.0631 10 6 1.9828 -2.1885 -1.1754 11 7 2.0333 -0.7189 -1.1853 12 6 2.5300 -0.0488 -2.2439 13 8 2.6479 1.1580 -2.1972 14 6 2.9357 -0.7921 -3.4753 15 8 4.0453 -1.2770 -3.5535 16 7 2.0690 -0.9239 -4.4991 17 6 0.6874 -0.4392 -4.3774 18 6 0.3890 0.4995 -5.5508 19 6 0.6879 -0.2236 -6.8660 20 6 2.1695 -0.6036 -6.9160 21 1 2.7793 0.2954 -6.8266 22 6 2.4698 -1.2868 -8.2254 23 1 1.6832 -1.4330 -8.9509 24 6 3.7497 -1.7200 -8.4993 25 7 4.7074 -1.5418 -7.6158 26 14 4.1234 -2.5599 -10.1254 27 1 2.8833 -2.6385 -10.9384 28 1 5.1499 -1.7790 -10.8615 29 1 4.6342 -3.9305 -9.8687 30 6 2.4881 -1.5547 -5.7582 31 1 -0.3633 -1.0274 0.0221 32 1 -0.3634 0.5329 0.8788 33 1 -0.3633 0.4945 -0.9009 34 1 1.5746 0.5967 2.8587 35 1 2.7005 -1.3386 4.3491 36 1 3.4574 -3.2493 2.7219 37 1 2.6788 -3.7731 0.1114 38 1 3.9358 -2.6039 -0.3601 39 1 0.9590 -2.5162 -0.9948 40 1 2.3228 -2.5707 -2.1379 41 1 0.0000 -1.2847 -4.4020 42 1 0.5706 0.0995 -3.4370 43 1 -0.6611 0.7904 -5.5260 44 1 1.0148 1.3886 -5.4735 45 1 0.4531 0.4336 -7.7032 46 1 0.0794 -1.1257 -6.9310 47 1 5.6080 -1.8463 -7.8087 48 1 1.9475 -2.4912 -5.8953 49 1 3.5600 -1.7499 -5.7300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327625076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:48 Heat of formation + Delta-G solvation = -7.558617 kcal Electronic energy + Delta-G solvation = -31752.722905 eV Core-core repulsion = 27680.859837 eV Total energy + Delta-G solvation = -4071.863068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87567 -40.45725 -38.57645 -36.86883 -36.55102 -33.98583 -33.49543 -31.96335 -31.47343 -29.94704 -28.79458 -28.11713 -26.22521 -25.14489 -23.97497 -23.93434 -22.06553 -21.92357 -20.77400 -19.77067 -18.81251 -18.18679 -17.85376 -17.13978 -16.87578 -16.24667 -16.05520 -15.79438 -14.82799 -14.76593 -14.55755 -14.37978 -14.03945 -13.85176 -13.82483 -13.65206 -13.24427 -13.11215 -12.93041 -12.73565 -12.61468 -12.38485 -12.30272 -12.24739 -12.08239 -12.05894 -11.82553 -11.48194 -11.11598 -11.10722 -10.99658 -10.57463 -10.47328 -10.32978 -10.03506 -9.36909 -9.24040 -9.18944 -8.95174 -8.73631 -8.53307 -8.18532 -8.02811 -6.07909 -4.16782 2.06597 2.15087 2.22495 2.76343 2.82352 2.88567 3.25387 3.34184 3.36868 3.55049 4.20005 4.21162 4.36452 4.42454 4.60686 4.72667 4.89004 4.94378 5.05420 5.11911 5.15726 5.22765 5.32433 5.36583 5.40298 5.43711 5.45031 5.53991 5.61716 5.83810 5.88858 5.95915 6.07672 6.11601 6.21150 6.22371 6.46107 6.54623 6.72099 6.83191 6.85736 6.90213 6.93258 7.01695 7.04012 7.19898 7.48688 7.73744 7.76674 7.82636 7.97542 8.23464 8.39174 8.87704 9.49503 10.97691 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.002919 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.048576 B = 9591.164718 C =10393.718348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.208 3.792 3 H 0.116 0.884 4 C 0.007 3.993 5 C -0.184 4.184 6 C -0.203 4.203 7 C -0.008 4.008 8 N -0.443 5.443 9 C 0.089 3.911 10 C 0.096 3.904 11 N -0.607 5.607 12 C 0.524 3.476 13 O -0.506 6.506 14 C 0.506 3.494 15 O -0.511 6.511 16 N -0.584 5.584 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.110 4.110 20 C 0.038 3.962 21 H 0.031 0.969 22 C -0.520 4.520 23 H 0.060 0.940 24 C 0.062 3.938 25 N -0.881 5.881 26 Si 0.894 3.106 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.283 1.283 30 C 0.111 3.889 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.264 0.736 48 H 0.051 0.949 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -2.373 18.507 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.105 3.895 3 H 0.134 0.866 4 C -0.105 4.105 5 C -0.209 4.209 6 C -0.227 4.227 7 C -0.138 4.138 8 N -0.119 5.119 9 C -0.033 4.033 10 C -0.027 4.027 11 N -0.344 5.344 12 C 0.308 3.692 13 O -0.379 6.379 14 C 0.286 3.714 15 O -0.386 6.386 16 N -0.317 5.317 17 C -0.016 4.016 18 C -0.172 4.172 19 C -0.148 4.148 20 C 0.019 3.981 21 H 0.049 0.951 22 C -0.558 4.558 23 H 0.079 0.921 24 C -0.141 4.141 25 N -0.519 5.519 26 Si 0.721 3.279 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.008 4.008 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.256 -2.221 18.131 20.478 hybrid contribution 0.394 -0.541 -0.741 0.999 sum -8.862 -2.762 17.390 19.712 Atomic orbital electron populations 1.22082 0.93040 1.02743 1.03121 1.19880 0.94283 0.96484 0.78876 0.86578 1.20342 1.05576 0.88583 0.95963 1.20413 1.08064 1.01154 0.91277 1.20883 1.07409 0.95530 0.98919 1.21749 1.07696 1.01820 0.82547 1.44068 1.45921 1.15664 1.06251 1.22329 1.01815 0.96325 0.82842 1.21981 1.00717 0.79974 1.00044 1.48373 1.62056 1.06749 1.17176 1.20856 0.76061 0.88033 0.84266 1.90779 1.51808 1.13378 1.81923 1.19918 0.86243 0.81033 0.84164 1.90833 1.20129 1.46961 1.80703 1.48642 1.10501 1.57236 1.15342 1.21724 0.83020 0.97880 0.98948 1.21943 1.00581 0.98730 0.95956 1.21634 0.99879 0.98818 0.94483 1.19005 0.90326 0.95547 0.93239 0.95053 1.21097 0.94685 1.38980 1.01056 0.92129 1.25068 0.96334 0.95774 0.96908 1.69881 1.01695 1.46017 1.34274 0.86510 0.78359 0.79222 0.83772 1.19753 1.20963 1.20955 1.22505 1.04490 0.95002 0.78829 0.92162 0.90509 0.91430 0.84554 0.84632 0.82161 0.88037 0.89137 0.89337 0.87354 0.91188 0.91626 0.91871 0.91737 0.92679 0.93010 0.92595 0.93089 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.42 37.16 0.35 -0.99 16 2 C 0.21 2.42 3.22 -68.52 -0.22 2.20 16 3 H 0.12 1.51 7.20 -51.93 -0.37 1.14 16 4 C 0.01 0.08 5.94 -81.74 -0.49 -0.40 16 5 C -0.18 -2.02 10.80 -39.93 -0.43 -2.45 16 6 C -0.20 -2.08 10.87 -39.68 -0.43 -2.51 16 7 C -0.01 -0.08 11.49 -16.82 -0.19 -0.28 16 8 N -0.44 -4.87 3.15 -112.31 -0.35 -5.23 16 9 C 0.09 0.86 7.12 -3.82 -0.03 0.83 16 10 C 0.10 1.02 6.21 -3.63 -0.02 1.00 16 11 N -0.61 -8.01 2.63 -166.58 -0.44 -8.45 16 12 C 0.52 9.09 5.48 -11.59 -0.06 9.03 16 13 O -0.51 -10.08 16.63 5.50 0.09 -9.99 16 14 C 0.51 10.07 5.53 -11.58 -0.06 10.00 16 15 O -0.51 -11.98 16.49 5.50 0.09 -11.89 16 16 N -0.58 -11.18 2.97 -173.28 -0.52 -11.69 16 17 C 0.11 1.63 6.36 -3.71 -0.02 1.61 16 18 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 19 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 20 C 0.04 0.90 2.25 -91.65 -0.21 0.70 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.52 -13.56 8.56 -34.44 -0.29 -13.85 16 23 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 24 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 25 N -0.88 -25.01 11.40 55.43 0.63 -24.37 16 26 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.11 2.52 5.39 -3.71 -0.02 2.50 16 31 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.73 7.53 -51.93 -0.39 0.34 16 40 H 0.11 1.28 6.31 -51.93 -0.33 0.95 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.92 6.31 -51.93 -0.33 0.59 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.12 3.34 5.16 -51.93 -0.27 3.07 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -32.61 389.09 -9.72 -42.33 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.54 Total: 3.34 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.53 Total: 4.43 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.68 Total: -49.74 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.61 -9.72 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327625076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.769 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds