Wall clock time and date at job start Wed Apr 1 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.69279 * 2 1 4 4 C 1.54606 * 110.94172 * 123.40668 * 2 1 3 5 5 C 1.51579 * 102.81732 * 143.96458 * 4 2 1 6 6 C 1.37910 * 131.56818 * 163.76755 * 5 4 2 7 7 C 1.38304 * 120.08201 * 180.32669 * 6 5 4 8 8 C 1.38306 * 119.87881 * 359.97438 * 7 6 5 9 9 C 1.37905 * 120.26516 * 359.87407 * 8 7 6 10 10 C 1.38961 * 107.94502 * 343.81135 * 5 4 2 11 11 N 1.40041 * 110.97149 * 359.54814 * 10 5 4 12 12 C 1.46902 * 110.99844 * 256.29096 * 11 10 5 13 13 C 1.53005 * 109.46647 * 290.00842 * 12 11 10 14 14 N 1.46505 * 109.46784 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99795 * 180.02562 * 14 13 12 16 16 O 1.21347 * 120.00101 * 359.97438 * 15 14 13 17 17 C 1.49457 * 119.99667 * 179.97438 * 15 14 13 18 18 O 1.21348 * 119.99763 * 359.97438 * 17 15 14 19 19 N 1.34771 * 119.99493 * 179.97438 * 17 15 14 20 20 C 1.46505 * 119.99622 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.50697 * 109.47466 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99890 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00428 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00362 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99850 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47052 * 89.99717 * 26 24 22 28 28 H 1.48495 * 109.47307 * 209.99656 * 26 24 22 29 29 H 1.48500 * 109.47143 * 330.00164 * 26 24 22 30 30 H 1.09001 * 109.47146 * 183.29296 * 1 2 3 31 31 H 1.08994 * 109.47431 * 303.29058 * 1 2 3 32 32 H 1.09004 * 109.47186 * 63.29400 * 1 2 3 33 33 H 1.08995 * 110.74253 * 262.30060 * 4 2 1 34 34 H 1.08995 * 110.74201 * 25.45071 * 4 2 1 35 35 H 1.08006 * 119.96299 * 0.29204 * 6 5 4 36 36 H 1.07995 * 120.06340 * 179.97438 * 7 6 5 37 37 H 1.08005 * 119.86442 * 179.89607 * 8 7 6 38 38 H 1.08006 * 119.90007 * 179.97438 * 9 8 7 39 39 H 1.08992 * 109.47070 * 170.01466 * 12 11 10 40 40 H 1.08992 * 109.47145 * 50.00659 * 12 11 10 41 41 H 1.09001 * 109.47420 * 60.00611 * 13 12 11 42 42 H 1.08992 * 109.47457 * 300.00270 * 13 12 11 43 43 H 0.96995 * 120.00194 * 359.97438 * 14 13 12 44 44 H 0.96996 * 120.00772 * 359.97438 * 19 17 15 45 45 H 1.09002 * 109.47068 * 299.99729 * 20 19 17 46 46 H 1.09001 * 109.47372 * 59.99816 * 20 19 17 47 47 H 1.09002 * 109.47153 * 300.00008 * 21 20 19 48 48 H 1.08998 * 109.47533 * 59.99637 * 21 20 19 49 49 H 0.96994 * 119.99814 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0825 -0.7950 1.2054 5 6 3.3190 -1.4586 0.6322 6 6 4.4032 -2.0548 1.2413 7 6 5.4218 -2.5899 0.4740 8 6 5.3512 -2.5265 -0.9058 9 6 4.2677 -1.9341 -1.5198 10 6 3.2360 -1.3944 -0.7534 11 7 2.0546 -0.7591 -1.1559 12 6 1.0683 -1.7364 -1.6354 13 6 1.5373 -2.3220 -2.9688 14 7 0.5534 -3.2963 -3.4474 15 6 0.7577 -3.9442 -4.6114 16 8 1.7564 -3.7202 -5.2633 17 6 -0.2458 -4.9385 -5.0993 18 8 -1.2442 -5.1628 -4.4470 19 7 -0.0417 -5.5860 -6.2635 20 6 -1.0257 -6.5603 -6.7420 21 6 -0.5570 -7.1454 -8.0757 22 6 -1.5688 -8.1481 -8.5677 23 1 -2.4575 -8.3477 -7.9873 24 6 -1.3606 -8.8098 -9.7592 25 7 -2.2438 -9.6845 -10.1888 26 14 0.1754 -8.4630 -10.7642 27 1 1.2593 -9.3885 -10.3471 28 1 -0.1200 -8.6644 -12.2054 29 1 0.6082 -7.0605 -10.5388 30 1 -0.3633 -1.0260 0.0590 31 1 -0.3634 0.5640 0.8590 32 1 -0.3634 0.4619 -0.9181 33 1 2.3481 -0.1234 2.0217 34 1 1.3609 -1.5403 1.5398 35 1 4.4571 -2.1035 2.3189 36 1 6.2709 -3.0564 0.9513 37 1 6.1476 -2.9429 -1.5048 38 1 4.2188 -1.8875 -2.5978 39 1 0.1060 -1.2436 -1.7734 40 1 0.9648 -2.5372 -0.9033 41 1 2.4997 -2.8149 -2.8309 42 1 1.6409 -1.5212 -3.7010 43 1 -0.2447 -3.4756 -2.9261 44 1 0.7562 -5.4065 -6.7850 45 1 -1.1296 -7.3612 -6.0100 46 1 -1.9879 -6.0672 -6.8801 47 1 -0.4534 -6.3443 -8.8076 48 1 0.4053 -7.6385 -7.9382 49 1 -2.0971 -10.1502 -11.0268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327986496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:25 Heat of formation + Delta-G solvation = -28.496539 kcal Electronic energy + Delta-G solvation = -29054.252866 eV Core-core repulsion = 24981.481862 eV Total energy + Delta-G solvation = -4072.771004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.56195 -40.44063 -38.41837 -37.66565 -35.78999 -34.98488 -32.99790 -32.76041 -31.65504 -30.50465 -30.28377 -28.45559 -26.87378 -25.88773 -24.11674 -22.71690 -22.38850 -21.53444 -20.92475 -20.76778 -20.04558 -18.38317 -17.15729 -16.99361 -16.80624 -16.53740 -16.42048 -15.97408 -15.65755 -15.23182 -14.98998 -14.84069 -14.41862 -14.22279 -14.17699 -13.87921 -13.62469 -13.53333 -13.38450 -13.09930 -12.93472 -12.64207 -12.61839 -12.31077 -12.22918 -11.82247 -11.66729 -11.59825 -11.53204 -11.49955 -11.25237 -11.17146 -10.44812 -10.31240 -9.96344 -9.84971 -9.48230 -9.45155 -9.31895 -9.16221 -8.78422 -8.61669 -8.36558 -6.12732 -4.13475 0.89976 1.00074 1.53252 2.34417 3.12561 3.26490 3.33852 3.34542 3.35124 3.36495 3.83914 4.04600 4.17031 4.31394 4.37509 4.39890 4.55201 4.63050 4.65754 4.72072 4.75864 4.92449 4.99800 5.01374 5.05367 5.15863 5.20357 5.23068 5.35185 5.42324 5.50352 5.53159 5.57319 5.70129 5.94002 5.96103 6.00927 6.04132 6.09633 6.14790 6.30934 6.44136 6.46295 6.50199 6.82837 6.91609 7.08381 7.18003 7.54478 7.62127 7.83587 8.19693 8.41335 8.90450 9.47213 10.99960 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.001804 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.356294 B =15514.035621 C =16411.844486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.079 3.921 3 H 0.101 0.899 4 C -0.107 4.107 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.130 4.130 8 C -0.103 4.103 9 C -0.109 4.109 10 C 0.085 3.915 11 N -0.484 5.484 12 C 0.039 3.961 13 C 0.115 3.885 14 N -0.704 5.704 15 C 0.510 3.490 16 O -0.519 6.519 17 C 0.499 3.501 18 O -0.529 6.529 19 N -0.690 5.690 20 C 0.127 3.873 21 C -0.024 4.024 22 C -0.524 4.524 23 H 0.077 0.923 24 C 0.070 3.930 25 N -0.897 5.897 26 Si 0.881 3.119 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.265 1.265 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.412 0.588 44 H 0.409 0.591 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.025 0.975 48 H 0.020 0.980 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.431 21.638 25.839 35.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.027 4.027 3 H 0.119 0.881 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.148 4.148 8 C -0.122 4.122 9 C -0.128 4.128 10 C -0.010 4.010 11 N -0.202 5.202 12 C -0.086 4.086 13 C -0.009 4.009 14 N -0.359 5.359 15 C 0.291 3.709 16 O -0.394 6.394 17 C 0.279 3.721 18 O -0.407 6.407 19 N -0.341 5.341 20 C 0.006 3.994 21 C -0.062 4.062 22 C -0.562 4.562 23 H 0.095 0.905 24 C -0.132 4.132 25 N -0.535 5.535 26 Si 0.708 3.292 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.189 1.189 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.248 0.752 44 H 0.245 0.755 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.415 21.859 25.205 35.598 hybrid contribution 0.710 -0.436 0.014 0.833 sum 13.125 21.423 25.219 35.598 Atomic orbital electron populations 1.22123 0.93346 1.02883 1.03270 1.22711 0.95446 0.98143 0.86445 0.88096 1.21784 0.94539 0.99244 0.98959 1.20953 0.97027 1.01457 0.94673 1.20406 0.92940 0.97887 0.99745 1.21096 0.98996 1.00776 0.93936 1.21005 0.97694 0.98661 0.94841 1.20661 0.92567 0.99560 1.00045 1.19520 0.92686 0.96424 0.92409 1.60153 1.02566 1.23594 1.33892 1.22476 0.96133 0.94370 0.95661 1.21496 0.92219 0.91870 0.95288 1.45599 1.25718 1.41789 1.22783 1.20398 0.86821 0.82113 0.81614 1.90757 1.28615 1.64216 1.55808 1.19931 0.86554 0.82676 0.82962 1.90743 1.28710 1.64985 1.56262 1.46205 1.26074 1.40778 1.21070 1.21720 0.90561 0.89628 0.97540 1.19827 0.97823 0.96844 0.91678 1.20870 1.06994 1.21680 1.06692 0.90539 1.24990 0.96484 0.94501 0.97242 1.69898 1.35318 1.26410 1.21896 0.86766 0.83563 0.79396 0.79487 1.20153 1.21224 1.18942 0.91729 0.91094 0.90975 0.89565 0.89879 0.86210 0.85682 0.85382 0.85402 0.88316 0.93152 0.90557 0.89985 0.75205 0.75543 0.91250 0.91217 0.95695 0.96144 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 7.86 37.16 0.29 -0.38 16 2 C 0.08 0.47 3.97 -66.32 -0.26 0.20 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.62 6.52 -26.61 -0.17 -0.80 16 5 C -0.14 -1.11 6.23 -104.04 -0.65 -1.76 16 6 C -0.09 -0.68 10.03 -39.68 -0.40 -1.07 16 7 C -0.13 -0.94 10.06 -39.53 -0.40 -1.34 16 8 C -0.10 -0.82 10.02 -39.68 -0.40 -1.22 16 9 C -0.11 -0.98 8.55 -39.27 -0.34 -1.31 16 10 C 0.09 0.76 5.29 -83.41 -0.44 0.32 16 11 N -0.48 -3.82 5.05 -161.58 -0.82 -4.63 16 12 C 0.04 0.29 3.83 -3.82 -0.01 0.28 16 13 C 0.11 1.10 5.54 -4.04 -0.02 1.07 16 14 N -0.70 -7.71 5.55 -60.72 -0.34 -8.05 16 15 C 0.51 7.30 7.89 -11.58 -0.09 7.21 16 16 O -0.52 -8.41 16.48 5.50 0.09 -8.32 16 17 C 0.50 8.19 7.89 -11.58 -0.09 8.10 16 18 O -0.53 -9.62 16.48 5.50 0.09 -9.53 16 19 N -0.69 -11.84 5.55 -60.73 -0.34 -12.18 16 20 C 0.13 2.53 5.61 -4.04 -0.02 2.51 16 21 C -0.02 -0.55 4.16 -27.89 -0.12 -0.66 16 22 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 23 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 24 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 25 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 26 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 30 H 0.06 0.28 6.68 -51.93 -0.35 -0.07 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.32 7.63 -51.93 -0.40 -0.08 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.45 7.88 -51.93 -0.41 0.04 16 35 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.13 1.13 7.15 -52.48 -0.38 0.76 16 39 H 0.10 0.60 5.77 -51.93 -0.30 0.30 16 40 H 0.05 0.38 7.99 -51.93 -0.41 -0.04 16 41 H 0.08 0.80 5.55 -51.93 -0.29 0.51 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.41 3.94 7.94 -40.82 -0.32 3.62 16 44 H 0.41 6.52 7.94 -40.82 -0.32 6.20 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 48 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 49 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -32.87 398.48 -10.09 -42.96 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.34 Total: 5.43 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.55 Total: -1.80 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.72 Total: -51.22 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.87 -10.09 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327986496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.462 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds