Wall clock time and date at job start Wed Apr 1 2020 04:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47317 * 2 1 4 4 O 1.21287 * 120.00047 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99666 * 179.97438 * 3 2 1 6 6 C 1.39962 * 119.99841 * 184.15856 * 5 3 2 7 7 C 1.38987 * 119.99994 * 322.69760 * 6 5 3 8 8 C 1.38215 * 120.22397 * 180.02562 * 7 6 5 9 9 C 1.38027 * 120.22035 * 359.74101 * 8 7 6 10 10 C 1.39576 * 119.99382 * 0.51737 * 9 8 7 11 11 C 1.47862 * 120.10949 * 179.76374 * 10 9 8 12 12 O 1.21548 * 119.99984 * 197.78758 * 11 10 9 13 13 N 1.34773 * 120.00177 * 17.79395 * 11 10 9 14 14 C 1.47433 * 125.64774 * 6.05682 * 13 11 10 15 15 C 1.54902 * 104.83153 * 155.92192 * 14 13 11 16 16 C 1.55157 * 101.58393 * 37.00992 * 15 14 13 17 17 C 1.47019 * 125.65102 * 186.12087 * 13 11 10 18 18 H 1.09001 * 110.00680 * 300.49611 * 17 13 11 19 19 C 1.52993 * 109.88818 * 61.58799 * 17 13 11 20 20 N 1.46506 * 109.47354 * 280.59743 * 19 17 13 21 21 C 1.36934 * 120.00196 * 172.85450 * 20 19 17 22 22 H 1.07997 * 120.00256 * 357.87600 * 21 20 19 23 23 C 1.38808 * 119.99906 * 177.86661 * 21 20 19 24 24 N 1.31618 * 120.00195 * 198.34017 * 23 21 20 25 25 Si 1.86810 * 120.00000 * 18.33993 * 23 21 20 26 26 H 1.48496 * 109.46956 * 276.30722 * 25 23 21 27 27 H 1.48500 * 109.46872 * 36.31101 * 25 23 21 28 28 H 1.48500 * 109.46794 * 156.30883 * 25 23 21 29 29 C 1.38593 * 119.99672 * 142.71339 * 6 5 3 30 30 H 1.09008 * 109.46655 * 299.99452 * 1 2 3 31 31 H 1.09001 * 109.47198 * 59.98841 * 1 2 3 32 32 H 1.08991 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46655 * 240.00548 * 2 1 3 34 34 H 1.09001 * 109.47198 * 120.01159 * 2 1 3 35 35 H 0.97000 * 120.00506 * 4.17187 * 5 3 2 36 36 H 1.07999 * 119.88959 * 359.97438 * 7 6 5 37 37 H 1.08001 * 119.89063 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.00345 * 180.24927 * 9 8 7 39 39 H 1.08997 * 110.36186 * 37.08298 * 14 13 11 40 40 H 1.09000 * 110.45625 * 274.80657 * 14 13 11 41 41 H 1.08998 * 111.00815 * 278.93606 * 15 14 13 42 42 H 1.08997 * 111.03828 * 155.09866 * 15 14 13 43 43 H 1.09001 * 110.72373 * 206.13031 * 16 15 14 44 44 H 1.09001 * 110.71813 * 82.85991 * 16 15 14 45 45 H 1.08995 * 109.47504 * 160.59507 * 19 17 13 46 46 H 1.08999 * 109.47031 * 40.59251 * 19 17 13 47 47 H 0.97000 * 119.99558 * 352.86267 * 20 19 17 48 48 H 0.96998 * 119.99882 * 180.02562 * 24 23 21 49 49 H 1.07999 * 120.11755 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6669 0.0005 6 6 3.8247 2.9833 0.0884 7 6 3.1448 4.0068 -0.5612 8 6 3.6023 5.3084 -0.4779 9 6 4.7345 5.6012 0.2553 10 6 5.4274 4.5797 0.9069 11 6 6.6435 4.8898 1.6887 12 8 7.4207 4.0023 1.9812 13 7 6.8900 6.1566 2.0773 14 6 5.9779 7.3017 1.9031 15 6 6.3952 8.3116 3.0010 16 6 7.9365 8.1339 3.0183 17 6 8.1136 6.6256 2.7438 18 1 8.2543 6.0919 3.6837 19 6 9.3216 6.4010 1.8323 20 7 9.7334 4.9968 1.9042 21 6 10.7039 4.5238 1.0619 22 1 11.1415 5.1770 0.3214 23 6 11.1253 3.2049 1.1598 24 7 12.2731 2.8396 0.6291 25 14 10.0635 1.9483 2.0449 26 1 10.3249 2.0200 3.5049 27 1 8.6309 2.2390 1.7835 28 1 10.3909 0.5872 1.5496 29 6 4.9654 3.2662 0.8230 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 3.9874 0.9318 -0.0602 36 1 2.2565 3.7843 -1.1336 37 1 3.0696 6.0996 -0.9845 38 1 5.0866 6.6201 0.3213 39 1 4.9441 6.9887 2.0486 40 1 6.1045 7.7426 0.9143 41 1 5.9603 8.0437 3.9639 42 1 6.1223 9.3290 2.7210 43 1 8.3444 8.3990 3.9937 44 1 8.4018 8.7265 2.2306 45 1 10.1447 7.0380 2.1561 46 1 9.0529 6.6486 0.8053 47 1 9.3184 4.4022 2.5485 48 1 12.5673 1.9179 0.6973 49 1 5.4955 2.4722 1.3279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483932250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:22 Heat of formation + Delta-G solvation = -29.912769 kcal Electronic energy + Delta-G solvation = -30721.021287 eV Core-core repulsion = 26648.188870 eV Total energy + Delta-G solvation = -4072.832416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.86909 -41.20934 -39.42923 -38.30315 -36.51620 -35.87617 -33.91829 -33.61730 -32.84698 -31.89178 -31.06628 -30.19547 -26.92266 -25.86796 -25.58646 -24.14071 -23.26977 -22.89347 -22.07885 -21.34592 -20.41244 -19.68591 -18.81334 -18.30420 -17.72113 -17.43734 -17.01093 -16.68105 -16.58919 -16.19586 -15.73361 -15.56577 -15.35460 -15.12386 -14.79310 -14.68881 -14.47385 -14.39677 -14.16022 -13.85802 -13.74333 -13.65560 -13.40332 -13.21623 -13.08752 -12.82895 -12.71944 -12.64477 -12.52503 -12.08310 -12.06868 -11.96976 -11.80120 -11.70845 -11.50732 -11.38783 -11.03324 -10.83227 -10.75806 -10.04810 -9.60416 -9.29550 -9.17419 -8.04696 -5.27033 -0.15301 0.19147 1.36237 1.38548 1.46130 1.75078 1.83835 1.96171 2.12588 2.56947 2.80290 3.23826 3.42635 3.56857 3.62269 3.72646 3.86406 3.95629 4.06001 4.11771 4.15264 4.21980 4.22634 4.27988 4.36711 4.39751 4.45641 4.58690 4.70507 4.73943 4.77626 4.83838 4.87833 4.96851 5.02404 5.03111 5.12654 5.14801 5.18332 5.21126 5.29251 5.33186 5.38388 5.41372 5.56053 5.74285 5.87815 6.20380 6.31571 6.57682 7.02544 7.11053 7.29307 7.97439 8.15854 9.15581 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.003567 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.502027 B = 7846.792074 C =10127.763005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.508 3.492 4 O -0.561 6.561 5 N -0.671 5.671 6 C 0.128 3.872 7 C -0.105 4.105 8 C -0.102 4.102 9 C -0.112 4.112 10 C -0.121 4.121 11 C 0.550 3.450 12 O -0.547 6.547 13 N -0.610 5.610 14 C 0.082 3.918 15 C -0.120 4.120 16 C -0.115 4.115 17 C 0.128 3.872 18 H 0.057 0.943 19 C 0.146 3.854 20 N -0.746 5.746 21 C -0.224 4.224 22 H 0.053 0.947 23 C -0.057 4.057 24 N -0.978 5.978 25 Si 0.922 3.078 26 H -0.295 1.295 27 H -0.219 1.219 28 H -0.307 1.307 29 C -0.104 4.104 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.424 0.576 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.036 0.964 46 H 0.019 0.981 47 H 0.371 0.629 48 H 0.254 0.746 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.902 6.227 0.700 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.298 3.702 4 O -0.438 6.438 5 N -0.317 5.317 6 C 0.034 3.966 7 C -0.125 4.125 8 C -0.120 4.120 9 C -0.130 4.130 10 C -0.125 4.125 11 C 0.340 3.660 12 O -0.425 6.425 13 N -0.344 5.344 14 C -0.039 4.039 15 C -0.157 4.157 16 C -0.153 4.153 17 C 0.024 3.976 18 H 0.075 0.925 19 C 0.019 3.981 20 N -0.394 5.394 21 C -0.355 4.355 22 H 0.071 0.929 23 C -0.249 4.249 24 N -0.629 5.629 25 Si 0.751 3.249 26 H -0.222 1.222 27 H -0.142 1.142 28 H -0.235 1.235 29 C -0.125 4.125 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.263 0.737 36 H 0.156 0.844 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.137 0.863 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.207 0.793 48 H 0.063 0.937 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.984 6.298 0.695 28.692 hybrid contribution 0.793 -1.801 0.304 1.991 sum -27.191 4.497 0.998 27.578 Atomic orbital electron populations 1.21549 0.92922 1.02882 1.02126 1.21741 0.98533 0.90377 1.06988 1.21775 0.80866 0.93707 0.73817 1.90680 1.55803 1.47816 1.49546 1.43664 1.08556 1.06653 1.72835 1.17660 0.95054 0.86124 0.97796 1.21536 1.00094 0.92898 0.97989 1.21389 0.95860 0.96585 0.98193 1.22295 0.94640 1.00337 0.95720 1.19706 0.96013 0.94745 1.02023 1.18529 0.85766 0.81892 0.79765 1.90869 1.48686 1.46328 1.56614 1.48453 1.19109 1.07564 1.59303 1.23038 0.94312 0.85924 1.00604 1.22836 0.93808 1.00403 0.98689 1.22651 0.98125 0.90397 1.04166 1.21923 0.83747 0.97515 0.94368 0.92453 1.21237 0.94595 0.85196 0.97066 1.42901 1.45733 1.07935 1.42799 1.18974 1.09913 0.95037 1.11590 0.92939 1.25249 0.97986 0.99477 1.02143 1.69974 1.21223 1.17605 1.54092 0.85917 0.83689 0.78054 0.77289 1.22250 1.14153 1.23454 1.20969 0.96744 0.96409 0.98413 0.93467 0.93006 0.89545 0.85936 0.86474 0.73732 0.84445 0.81634 0.81434 0.88663 0.89173 0.90174 0.86287 0.88371 0.89193 0.94608 0.96315 0.79259 0.93734 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.20 71.98 0.66 -0.94 16 2 C -0.14 -1.43 6.42 29.85 0.19 -1.24 16 3 C 0.51 9.79 7.66 87.66 0.67 10.47 16 4 O -0.56 -14.76 13.57 -3.05 -0.04 -14.80 16 5 N -0.67 -13.23 5.33 -303.60 -1.62 -14.85 16 6 C 0.13 3.25 6.25 38.11 0.24 3.49 16 7 C -0.10 -2.46 8.67 22.44 0.19 -2.26 16 8 C -0.10 -1.99 10.02 22.21 0.22 -1.77 16 9 C -0.11 -2.47 8.13 22.54 0.18 -2.29 16 10 C -0.12 -3.68 5.77 -20.10 -0.12 -3.80 16 11 C 0.55 20.20 7.46 86.79 0.65 20.85 16 12 O -0.55 -25.57 10.86 -3.87 -0.04 -25.62 16 13 N -0.61 -17.88 3.06 -791.43 -2.42 -20.30 16 14 C 0.08 1.40 4.92 86.85 0.43 1.83 16 15 C -0.12 -1.49 7.08 31.98 0.23 -1.26 16 16 C -0.12 -2.10 6.41 31.78 0.20 -1.90 16 17 C 0.13 3.92 3.01 45.34 0.14 4.06 16 18 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 19 C 0.15 5.99 5.60 86.38 0.48 6.48 16 20 N -0.75 -39.69 4.19 -343.47 -1.44 -41.13 16 21 C -0.22 -14.12 10.39 84.03 0.87 -13.25 16 22 H 0.05 3.54 8.06 -2.91 -0.02 3.52 16 23 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 24 N -0.98 -67.51 13.97 21.65 0.30 -67.21 16 25 Si 0.92 51.66 27.19 68.60 1.86 53.53 16 26 H -0.29 -16.38 7.11 99.48 0.71 -15.67 16 27 H -0.22 -11.93 4.88 99.48 0.49 -11.44 16 28 H -0.31 -17.11 7.11 99.48 0.71 -16.40 16 29 C -0.10 -3.14 9.51 22.66 0.22 -2.92 16 30 H 0.05 0.70 8.10 -2.38 -0.02 0.68 16 31 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.42 6.22 8.83 -92.71 -0.82 5.40 16 36 H 0.14 3.23 6.40 -2.91 -0.02 3.21 16 37 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.17 2.79 3.98 -2.91 -0.01 2.78 16 39 H 0.10 1.39 6.51 -2.39 -0.02 1.37 16 40 H 0.09 1.25 6.97 -2.39 -0.02 1.23 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.52 7.85 -2.39 -0.02 1.50 16 45 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.37 20.09 4.01 -92.71 -0.37 19.72 16 48 H 0.25 16.77 8.31 -92.71 -0.77 16.00 16 49 H 0.12 3.92 7.76 -2.91 -0.02 3.90 16 Total: -1.00 -92.27 385.28 2.11 -90.16 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.42 Total: 27.90 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.93 Total: 12.31 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -5.18 Total: -143.48 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.08 Total: -40.42 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 1.86 Total: 53.53 kcal Total: -92.27 2.11 -90.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483932250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.249 kcal (2) G-P(sol) polarization free energy of solvation -92.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds