Wall clock time and date at job start Wed Apr 1 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50695 * 109.46950 * 2 1 4 4 N 1.27947 * 120.00068 * 95.00149 * 3 2 1 5 5 Si 1.86801 * 120.00459 * 274.99910 * 3 2 1 6 6 H 1.48507 * 109.46692 * 90.00100 * 5 3 2 7 7 H 1.48494 * 109.47330 * 209.99948 * 5 3 2 8 8 H 1.48498 * 109.46979 * 330.00800 * 5 3 2 9 9 C 1.50692 * 109.47094 * 120.00226 * 2 1 3 10 10 O 1.21284 * 119.99863 * 239.99609 * 9 2 1 11 11 N 1.34781 * 120.00213 * 60.00338 * 9 2 1 12 12 C 1.46495 * 120.00159 * 180.02562 * 11 9 2 13 13 H 1.09003 * 109.47518 * 34.99050 * 12 11 9 14 14 C 1.52998 * 109.47202 * 154.99966 * 12 11 9 15 15 C 1.53000 * 109.47139 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47094 * 299.99926 * 15 14 12 17 17 H 1.09001 * 109.46749 * 299.99439 * 16 15 14 18 18 N 1.46503 * 109.47335 * 180.02562 * 16 15 14 19 19 C 1.34776 * 119.99925 * 154.99764 * 18 16 15 20 20 O 1.21777 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.41519 * 119.99742 * 180.02562 * 19 18 16 22 22 C 1.35619 * 119.99935 * 188.32948 * 21 19 18 23 23 C 1.41671 * 119.99801 * 32.00552 * 22 21 19 24 24 C 1.38280 * 126.25444 * 187.27472 * 23 22 21 25 25 C 1.39790 * 107.07585 * 179.74455 * 24 23 22 26 26 C 1.35498 * 107.91038 * 0.25479 * 25 24 23 27 27 N 1.35758 * 108.90801 * 0.02562 * 26 25 24 28 28 H 0.96998 * 125.68492 * 179.97438 * 27 26 25 29 29 C 1.53001 * 109.47353 * 59.99806 * 16 15 14 30 30 C 1.53000 * 109.47178 * 300.00142 * 29 16 15 31 31 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46787 * 299.99715 * 1 2 3 33 33 H 1.08998 * 109.46798 * 59.99768 * 1 2 3 34 34 H 1.08998 * 109.46787 * 240.00285 * 2 1 3 35 35 H 0.97000 * 120.00178 * 179.97438 * 4 3 2 36 36 H 0.96995 * 119.99768 * 359.97438 * 11 9 2 37 37 H 1.08994 * 109.47435 * 59.99743 * 14 12 11 38 38 H 1.08996 * 109.46742 * 299.98959 * 14 12 11 39 39 H 1.08997 * 109.47740 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.47374 * 59.99212 * 15 14 12 41 41 H 0.97004 * 119.99562 * 334.99774 * 18 16 15 42 42 H 1.08001 * 120.00056 * 8.32611 * 21 19 18 43 43 H 1.08000 * 119.99728 * 212.01107 * 22 21 19 44 44 H 1.08007 * 126.46245 * 359.97438 * 24 23 22 45 45 H 1.08000 * 126.04256 * 180.26586 * 25 24 23 46 46 H 1.08001 * 125.54507 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.46922 * 60.00517 * 29 16 15 48 48 H 1.09002 * 109.46782 * 180.02562 * 29 16 15 49 49 H 1.09001 * 109.46864 * 300.00331 * 30 29 16 50 50 H 1.08991 * 109.47189 * 179.97438 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3367 1.9917 1.1038 5 14 2.2108 2.3485 -1.6115 6 1 0.9430 3.0592 -1.9165 7 1 3.3153 3.3342 -1.4956 8 1 2.5156 1.3895 -2.7036 9 6 2.0324 -0.7104 1.2304 10 8 2.7297 -0.1210 2.0287 11 7 1.7069 -2.0008 1.4436 12 6 2.1947 -2.6913 2.6400 13 1 2.2311 -1.9908 3.4744 14 6 1.2507 -3.8453 2.9835 15 6 1.7605 -4.5668 4.2326 16 6 3.1632 -5.1172 3.9669 17 1 3.1265 -5.8175 3.1324 18 7 3.6512 -5.8086 5.1627 19 6 4.5831 -6.7755 5.0489 20 8 5.0191 -7.0749 3.9520 21 6 5.0541 -7.4438 6.2040 22 6 6.1072 -8.2935 6.1138 23 6 7.1315 -8.0538 5.1648 24 6 8.1825 -8.9007 4.8645 25 6 8.9444 -8.2742 3.8740 26 6 8.3653 -7.0814 3.5950 27 7 7.2646 -6.9334 4.3758 28 1 6.6690 -6.1678 4.3748 29 6 4.1073 -3.9632 3.6233 30 6 3.5974 -3.2417 2.3742 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.6603 2.9062 1.1038 36 1 1.1490 -2.4721 0.8053 37 1 1.2144 -4.5457 2.1492 38 1 0.2514 -3.4531 3.1725 39 1 1.0878 -5.3886 4.4777 40 1 1.7973 -3.8665 5.0672 41 1 3.3035 -5.5704 6.0364 42 1 4.5749 -7.2770 7.1575 43 1 6.1650 -9.1529 6.7653 44 1 8.3761 -9.8660 5.3086 45 1 9.8366 -8.6709 3.4125 46 1 8.7219 -6.3646 2.8701 47 1 4.1439 -3.2631 4.4578 48 1 5.1064 -4.3555 3.4335 49 1 3.5607 -3.9420 1.5397 50 1 4.2697 -2.4194 2.1297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499846216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:19 Heat of formation + Delta-G solvation = 28.887473 kcal Electronic energy + Delta-G solvation = -30454.144855 eV Core-core repulsion = 26370.206469 eV Total energy + Delta-G solvation = -4083.938386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.30413 -41.30128 -40.69042 -39.14060 -36.84361 -35.91891 -34.71171 -34.26512 -32.87666 -31.90610 -31.85428 -30.00114 -28.66956 -25.99646 -25.07722 -23.94391 -23.38801 -22.06565 -21.77938 -21.35848 -21.29399 -20.69807 -20.10224 -18.99998 -18.60390 -17.68761 -17.41804 -16.90598 -16.70906 -16.19969 -15.93839 -15.55126 -15.29969 -15.18063 -15.11793 -14.96412 -14.90348 -14.59773 -14.35856 -14.27095 -14.05727 -13.90141 -13.75046 -13.54883 -13.28109 -13.18684 -13.05310 -12.91505 -12.71582 -12.63973 -12.44242 -12.29994 -12.20584 -12.15037 -11.53041 -11.51643 -11.36263 -11.09260 -10.77456 -10.70983 -10.13682 -9.95334 -9.77459 -9.51972 -8.49979 -0.46628 0.91736 1.09368 1.46437 1.62069 1.76604 1.83268 1.88002 1.98361 2.21548 2.40446 2.42867 2.57025 3.41860 3.58357 3.62573 3.95547 3.97561 4.06525 4.10161 4.12728 4.14284 4.19867 4.28373 4.29640 4.35712 4.37729 4.40818 4.44155 4.50111 4.64352 4.68331 4.69102 4.78552 4.91938 4.96119 4.99430 5.03471 5.06170 5.08139 5.08795 5.09846 5.24377 5.29460 5.33380 5.36008 5.38498 5.51347 5.62577 5.99310 6.15208 6.57417 6.62575 6.69252 7.03037 7.24485 7.46781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.022 4.022 4 N -0.621 5.621 5 Si 0.981 3.019 6 H -0.239 1.239 7 H -0.273 1.273 8 H -0.222 1.222 9 C 0.509 3.491 10 O -0.549 6.549 11 N -0.721 5.721 12 C 0.150 3.850 13 H 0.065 0.935 14 C -0.114 4.114 15 C -0.117 4.117 16 C 0.149 3.851 17 H 0.072 0.928 18 N -0.714 5.714 19 C 0.540 3.460 20 O -0.589 6.589 21 C -0.301 4.301 22 C 0.050 3.950 23 C -0.021 4.021 24 C -0.155 4.155 25 C -0.232 4.232 26 C 0.009 3.991 27 N -0.517 5.517 28 H 0.415 0.585 29 C -0.117 4.117 30 C -0.118 4.118 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.145 0.855 35 H 0.332 0.668 36 H 0.414 0.586 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.414 0.586 42 H 0.164 0.836 43 H 0.176 0.824 44 H 0.159 0.841 45 H 0.151 0.849 46 H 0.182 0.818 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 -1.440 -1.376 6.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.270 4.270 4 N -0.234 5.234 5 Si 0.796 3.204 6 H -0.162 1.162 7 H -0.197 1.197 8 H -0.144 1.144 9 C 0.295 3.705 10 O -0.425 6.425 11 N -0.374 5.374 12 C 0.045 3.955 13 H 0.083 0.917 14 C -0.152 4.152 15 C -0.155 4.155 16 C 0.044 3.956 17 H 0.091 0.909 18 N -0.364 5.364 19 C 0.334 3.666 20 O -0.474 6.474 21 C -0.323 4.323 22 C 0.030 3.970 23 C -0.132 4.132 24 C -0.180 4.180 25 C -0.256 4.256 26 C -0.130 4.130 27 N -0.113 5.113 28 H 0.257 0.743 29 C -0.157 4.157 30 C -0.157 4.157 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.251 0.749 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.251 0.749 42 H 0.182 0.818 43 H 0.193 0.807 44 H 0.177 0.823 45 H 0.168 0.832 46 H 0.199 0.801 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.959 -0.891 -1.281 5.198 hybrid contribution -0.045 0.948 -0.079 0.953 sum -5.004 0.057 -1.360 5.186 Atomic orbital electron populations 1.21734 0.89611 1.04625 1.03479 1.20907 0.99539 0.92464 0.97997 1.30461 0.94014 0.99518 1.03029 1.68514 1.07520 1.14610 1.32737 0.85059 0.80998 0.79372 0.74944 1.16243 1.19730 1.14365 1.20915 0.79923 0.81750 0.87868 1.90765 1.38149 1.66189 1.47359 1.46003 1.54170 1.11563 1.25712 1.20855 0.92996 0.93723 0.87892 0.91711 1.21692 0.98939 0.96067 0.98547 1.21710 0.94164 1.00872 0.98760 1.20927 0.93695 0.92849 0.88137 0.90944 1.46004 1.42618 1.36726 1.11066 1.17571 0.79937 0.79110 0.90004 1.90857 1.60084 1.66486 1.29979 1.22040 1.05179 1.05939 0.99118 1.21259 0.88677 0.94730 0.92354 1.18723 1.00838 0.91143 1.02502 1.21893 0.95752 1.00065 1.00331 1.21164 1.04099 0.96603 1.03702 1.22562 0.90709 1.00819 0.98868 1.42710 1.21755 1.17268 1.29529 0.74299 1.21767 0.98667 0.97130 0.98109 1.21766 0.96728 0.99222 0.97986 0.88963 0.93528 0.89167 0.83786 0.85121 0.74893 0.89859 0.89356 0.89438 0.90346 0.74935 0.81816 0.80715 0.82316 0.83169 0.80077 0.91645 0.93388 0.91105 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.97 9.02 71.99 0.65 1.62 16 2 C -0.09 0.23 2.65 -12.29 -0.03 0.20 16 3 C -0.02 -0.03 4.75 88.67 0.42 0.39 16 4 N -0.62 -4.91 11.22 24.11 0.27 -4.64 16 5 Si 0.98 -3.04 29.29 68.60 2.01 -1.03 16 6 H -0.24 0.72 7.11 99.48 0.71 1.43 16 7 H -0.27 -0.27 7.11 99.48 0.71 0.44 16 8 H -0.22 1.14 7.11 99.48 0.71 1.84 16 9 C 0.51 1.97 7.06 87.65 0.62 2.59 16 10 O -0.55 -7.82 13.99 -3.04 -0.04 -7.87 16 11 N -0.72 1.76 4.97 -442.53 -2.20 -0.44 16 12 C 0.15 -0.13 2.46 44.99 0.11 -0.02 16 13 H 0.06 0.30 7.58 -2.39 -0.02 0.28 16 14 C -0.11 0.72 5.39 30.59 0.16 0.89 16 15 C -0.12 0.69 5.39 30.59 0.16 0.86 16 16 C 0.15 -0.19 2.45 44.99 0.11 -0.08 16 17 H 0.07 0.22 7.57 -2.39 -0.02 0.20 16 18 N -0.71 1.31 5.07 -451.56 -2.29 -0.97 16 19 C 0.54 2.01 6.29 85.05 0.53 2.54 16 20 O -0.59 -6.60 12.37 -4.59 -0.06 -6.66 16 21 C -0.30 0.05 9.72 22.47 0.22 0.26 16 22 C 0.05 0.06 9.77 22.51 0.22 0.28 16 23 C -0.02 -0.14 5.94 39.08 0.23 0.09 16 24 C -0.16 -0.96 10.86 22.66 0.25 -0.71 16 25 C -0.23 -1.51 10.81 22.01 0.24 -1.27 16 26 C 0.01 0.05 11.90 83.45 0.99 1.05 16 27 N -0.52 -3.98 4.50 -187.34 -0.84 -4.83 16 28 H 0.41 3.08 6.14 -92.71 -0.57 2.51 16 29 C -0.12 -0.15 5.50 30.59 0.17 0.02 16 30 C -0.12 -0.18 5.49 30.60 0.17 -0.01 16 31 H 0.09 -1.08 7.56 -2.39 -0.02 -1.10 16 32 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.09 -0.94 7.94 -2.39 -0.02 -0.96 16 34 H 0.14 -1.36 7.85 -2.39 -0.02 -1.38 16 35 H 0.33 1.69 8.23 -92.71 -0.76 0.93 16 36 H 0.41 -3.83 8.02 -92.71 -0.74 -4.57 16 37 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.41 -2.94 8.56 -92.71 -0.79 -3.73 16 42 H 0.16 -1.08 8.06 -2.91 -0.02 -1.11 16 43 H 0.18 -0.96 8.06 -2.91 -0.02 -0.98 16 44 H 0.16 0.20 8.06 -2.91 -0.02 0.18 16 45 H 0.15 0.43 8.06 -2.91 -0.02 0.41 16 46 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 47 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 Total: 0.00 -26.20 401.21 0.94 -25.26 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: -1.13 Total: -7.52 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.23 Total: 8.69 kcal Atomic # 7 Polarization: -5.82 SS G_CDS: -5.06 Total: -10.88 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.10 Total: -14.52 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.01 Total: -1.03 kcal Total: -26.20 0.94 -25.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499846216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.147 kcal (2) G-P(sol) polarization free energy of solvation -26.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds