Wall clock time and date at job start Wed Apr 1 2020 04:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47224 * 2 1 4 4 O 1.21285 * 119.99985 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00124 * 180.02562 * 3 2 1 6 6 C 1.39956 * 120.00007 * 184.62671 * 5 3 2 7 7 C 1.38986 * 119.99835 * 324.63125 * 6 5 3 8 8 C 1.38214 * 120.22272 * 180.28118 * 7 6 5 9 9 C 1.38023 * 120.22217 * 359.97438 * 8 7 6 10 10 C 1.39575 * 119.99509 * 359.97438 * 9 8 7 11 11 C 1.47859 * 120.10817 * 179.97438 * 10 9 8 12 12 O 1.21551 * 119.99944 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00087 * 0.02562 * 11 10 9 14 14 C 1.46499 * 120.00122 * 180.02562 * 13 11 10 15 15 C 1.53781 * 113.61583 * 254.14066 * 14 13 11 16 16 C 1.54050 * 86.98678 * 270.83535 * 15 14 13 17 17 C 1.53001 * 113.62071 * 220.01874 * 16 15 14 18 18 N 1.46493 * 109.47367 * 272.49317 * 17 16 15 19 19 C 1.36926 * 120.00310 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00185 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00559 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99609 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00526 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46875 * 89.99945 * 23 21 19 25 25 H 1.48495 * 109.47467 * 210.00232 * 23 21 19 26 26 H 1.48498 * 109.47076 * 330.00352 * 23 21 19 27 27 C 1.53779 * 113.61538 * 156.53134 * 14 13 11 28 28 C 1.38600 * 119.99757 * 144.90860 * 6 5 3 29 29 H 1.09002 * 109.47366 * 59.99153 * 1 2 3 30 30 H 1.08995 * 109.47252 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46764 * 299.99833 * 1 2 3 32 32 H 1.09000 * 109.46775 * 240.00692 * 2 1 3 33 33 H 1.08995 * 109.47435 * 120.00428 * 2 1 3 34 34 H 0.96998 * 120.00009 * 4.61636 * 5 3 2 35 35 H 1.08000 * 119.88997 * 0.25851 * 7 6 5 36 36 H 1.08004 * 119.88641 * 179.97438 * 8 7 6 37 37 H 1.07998 * 119.99830 * 179.97438 * 9 8 7 38 38 H 0.96994 * 120.00082 * 0.02562 * 13 11 10 39 39 H 1.09004 * 112.85022 * 25.33091 * 14 13 11 40 40 H 1.09001 * 113.61421 * 25.43275 * 15 14 13 41 41 H 1.09005 * 113.61541 * 156.33369 * 15 14 13 42 42 H 1.09001 * 113.68762 * 89.12390 * 16 15 14 43 43 H 1.08997 * 109.46696 * 32.49601 * 17 16 15 44 44 H 1.09001 * 109.46722 * 152.49336 * 17 16 15 45 45 H 0.97007 * 120.00041 * 0.02562 * 18 17 16 46 46 H 0.96999 * 119.99910 * 179.97438 * 22 21 19 47 47 H 1.09003 * 113.61238 * 203.66685 * 27 14 13 48 48 H 1.09000 * 113.61660 * 334.56908 * 27 14 13 49 49 H 1.08001 * 120.11123 * 359.69667 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8247 2.9827 0.0972 7 6 3.1210 4.0169 -0.5086 8 6 3.5814 5.3171 -0.4199 9 6 4.7427 5.5973 0.2714 10 6 5.4560 4.5659 0.8842 11 6 6.7007 4.8632 1.6250 12 8 7.3206 3.9634 2.1575 13 7 7.1479 6.1317 1.7096 14 6 8.3814 6.4262 2.4431 15 6 8.1427 7.1010 3.8041 16 6 8.2034 8.4464 3.0562 17 6 8.9529 9.5395 3.8206 18 7 8.0230 10.2377 4.7115 19 6 8.4708 11.2624 5.5016 20 1 9.5095 11.5563 5.4677 21 6 7.5898 11.9237 6.3462 22 7 6.3240 11.5654 6.3880 23 14 8.2008 13.3212 7.4247 24 1 8.0714 14.6057 6.6908 25 1 7.3908 13.3777 8.6680 26 1 9.6261 13.0913 7.7725 27 6 9.0641 7.7314 2.0013 28 6 4.9922 3.2535 0.7934 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9872 0.9326 -0.0685 35 1 2.2117 3.8038 -1.0509 36 1 3.0305 6.1165 -0.8932 37 1 5.0994 6.6145 0.3380 38 1 6.6531 6.8498 1.2850 39 1 9.0589 5.5736 2.4913 40 1 7.1653 6.8826 4.2343 41 1 8.9594 6.9577 4.5118 42 1 7.2375 8.7809 2.6777 43 1 9.7512 9.0885 4.4098 44 1 9.3805 10.2497 3.1128 45 1 7.0901 9.9736 4.7422 46 1 5.7084 12.0272 6.9784 47 1 10.1323 7.7601 2.2170 48 1 8.8302 8.0216 0.9771 49 1 5.5401 2.4513 1.2652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505499871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:15 Heat of formation + Delta-G solvation = -16.241501 kcal Electronic energy + Delta-G solvation = -28578.230139 eV Core-core repulsion = 24505.990554 eV Total energy + Delta-G solvation = -4072.239586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.08817 -40.30662 -38.95043 -37.86730 -35.27426 -34.53853 -33.45490 -33.12755 -31.41715 -30.81376 -29.90301 -26.86613 -25.49994 -25.33516 -24.52899 -23.18971 -22.54922 -21.59296 -21.29417 -20.30537 -19.11028 -18.58560 -17.73034 -17.05115 -16.64027 -16.40484 -16.29879 -15.80715 -15.16510 -14.97877 -14.86290 -14.63943 -14.43467 -14.13315 -13.99990 -13.76867 -13.67119 -13.34041 -13.00849 -12.83392 -12.72376 -12.41300 -12.35055 -12.22103 -12.11704 -11.76080 -11.69404 -11.61372 -11.02268 -10.81854 -10.80861 -10.49392 -10.35104 -10.32525 -10.07420 -10.00822 -9.81730 -9.59532 -9.30357 -9.00210 -8.82344 -8.58939 -6.87962 -5.73676 -3.01862 0.58155 0.91255 2.07291 2.49612 2.73366 3.03586 3.45272 3.50240 3.52177 3.59718 4.10475 4.43908 4.48963 4.53744 4.56742 4.59836 4.66731 4.76616 4.83387 4.89167 4.95246 5.10277 5.13113 5.15091 5.16553 5.29754 5.41932 5.52591 5.60481 5.71694 5.73759 5.83956 5.87007 5.90332 5.94483 5.98440 6.04374 6.10660 6.12686 6.25224 6.32090 6.43980 6.56960 6.64152 6.80160 6.86627 6.95124 7.40754 7.61810 7.72363 8.09332 8.45494 9.56435 10.15824 10.50156 11.49282 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.001719 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.546575 B =16280.430477 C =17248.860056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.511 3.489 4 O -0.519 6.519 5 N -0.675 5.675 6 C 0.132 3.868 7 C -0.096 4.096 8 C -0.107 4.107 9 C -0.097 4.097 10 C -0.114 4.114 11 C 0.562 3.438 12 O -0.539 6.539 13 N -0.702 5.702 14 C 0.116 3.884 15 C -0.139 4.139 16 C -0.114 4.114 17 C 0.162 3.838 18 N -0.732 5.732 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.137 4.137 28 C -0.085 4.085 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.401 0.599 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -24.740 -19.544 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.299 3.701 4 O -0.394 6.394 5 N -0.321 5.321 6 C 0.038 3.962 7 C -0.117 4.117 8 C -0.126 4.126 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.349 3.651 12 O -0.417 6.417 13 N -0.353 5.353 14 C 0.011 3.989 15 C -0.177 4.177 16 C -0.132 4.132 17 C 0.035 3.965 18 N -0.376 5.376 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.176 4.176 28 C -0.106 4.106 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.249 0.751 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.237 0.763 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.114 0.886 48 H 0.088 0.912 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.628 -24.656 -19.055 31.858 hybrid contribution 0.059 0.810 0.528 0.968 sum -6.568 -23.847 -18.527 30.904 Atomic orbital electron populations 1.21553 0.92552 1.01963 1.03607 1.21650 0.99055 0.92727 1.04792 1.21062 0.81420 0.92511 0.75113 1.90723 1.55037 1.46289 1.47305 1.43565 1.08085 1.07041 1.73364 1.17603 0.95255 0.84763 0.98547 1.21477 1.00266 0.92010 0.97918 1.21047 0.95906 0.96524 0.99123 1.21364 0.95037 0.98634 0.96616 1.19698 0.96483 0.93922 1.01680 1.18180 0.84345 0.82770 0.79800 1.90761 1.58214 1.45496 1.47193 1.45594 1.26470 1.08388 1.54848 1.21969 0.85820 0.97888 0.93260 1.23463 1.03009 0.95498 0.95756 1.22815 0.99343 0.95014 0.96058 1.20634 0.92573 0.91597 0.91714 1.42344 1.08513 1.39234 1.47478 1.19246 0.94302 1.08097 1.15389 0.91241 1.24740 0.95646 1.00185 1.00525 1.69661 1.02667 1.43858 1.42077 0.86190 0.77648 0.82335 0.80032 1.21764 1.21801 1.20788 1.23310 1.00460 0.94548 0.99275 1.20951 0.95856 0.96697 0.97115 0.91842 0.91755 0.91749 0.88519 0.88396 0.75113 0.83993 0.84789 0.85235 0.76270 0.88230 0.91254 0.89041 0.89436 0.96210 0.96412 0.78331 0.93566 0.88600 0.91219 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.20 37.16 0.34 -0.35 16 2 C -0.14 -0.55 6.42 -27.88 -0.18 -0.73 16 3 C 0.51 3.90 7.67 -10.98 -0.08 3.81 16 4 O -0.52 -5.97 13.42 5.55 0.07 -5.89 16 5 N -0.67 -4.51 5.33 -9.89 -0.05 -4.56 16 6 C 0.13 1.24 6.29 -83.74 -0.53 0.71 16 7 C -0.10 -0.95 8.70 -39.31 -0.34 -1.29 16 8 C -0.11 -0.96 10.02 -39.67 -0.40 -1.35 16 9 C -0.10 -0.91 9.54 -39.16 -0.37 -1.28 16 10 C -0.11 -1.27 5.87 -104.99 -0.62 -1.88 16 11 C 0.56 7.40 7.77 -12.32 -0.10 7.30 16 12 O -0.54 -8.78 15.96 5.32 0.08 -8.69 16 13 N -0.70 -8.24 5.21 -53.96 -0.28 -8.52 16 14 C 0.12 1.47 4.29 -67.12 -0.29 1.18 16 15 C -0.14 -2.09 7.45 -25.78 -0.19 -2.28 16 16 C -0.11 -1.75 3.65 -89.66 -0.33 -2.08 16 17 C 0.16 3.23 6.10 -4.05 -0.02 3.21 16 18 N -0.73 -18.71 5.60 -59.92 -0.34 -19.04 16 19 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 23 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 28 C -0.09 -0.87 9.51 -38.98 -0.37 -1.24 16 29 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.41 1.39 8.82 -40.82 -0.36 1.03 16 35 H 0.14 1.44 6.22 -52.49 -0.33 1.12 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.13 0.95 6.40 -52.49 -0.34 0.62 16 38 H 0.40 3.88 6.73 -40.82 -0.27 3.60 16 39 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.14 1.36 7.65 -52.49 -0.40 0.96 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -36.33 407.06 -10.00 -46.33 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.41 Total: 10.08 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.91 Total: -5.58 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.05 Total: -60.03 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.16 Total: -14.59 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.33 -10.00 -46.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505499871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.086 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds