Wall clock time and date at job start Wed Apr 1 2020 04:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47224 * 2 1 4 4 O 1.21285 * 119.99985 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00124 * 180.02562 * 3 2 1 6 6 C 1.39956 * 120.00007 * 184.62671 * 5 3 2 7 7 C 1.38986 * 119.99835 * 324.63125 * 6 5 3 8 8 C 1.38214 * 120.22272 * 180.28118 * 7 6 5 9 9 C 1.38023 * 120.22217 * 359.97438 * 8 7 6 10 10 C 1.39575 * 119.99509 * 359.97438 * 9 8 7 11 11 C 1.47859 * 120.10817 * 179.97438 * 10 9 8 12 12 O 1.21551 * 119.99944 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00087 * 0.02562 * 11 10 9 14 14 C 1.46499 * 120.00122 * 180.02562 * 13 11 10 15 15 C 1.53781 * 113.61583 * 254.14066 * 14 13 11 16 16 C 1.54050 * 86.98678 * 270.83535 * 15 14 13 17 17 C 1.53001 * 113.62071 * 220.01874 * 16 15 14 18 18 N 1.46493 * 109.47367 * 272.49317 * 17 16 15 19 19 C 1.36926 * 120.00310 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00185 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00559 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99609 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00526 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46875 * 89.99945 * 23 21 19 25 25 H 1.48495 * 109.47467 * 210.00232 * 23 21 19 26 26 H 1.48498 * 109.47076 * 330.00352 * 23 21 19 27 27 C 1.53779 * 113.61538 * 156.53134 * 14 13 11 28 28 C 1.38600 * 119.99757 * 144.90860 * 6 5 3 29 29 H 1.09002 * 109.47366 * 59.99153 * 1 2 3 30 30 H 1.08995 * 109.47252 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46764 * 299.99833 * 1 2 3 32 32 H 1.09000 * 109.46775 * 240.00692 * 2 1 3 33 33 H 1.08995 * 109.47435 * 120.00428 * 2 1 3 34 34 H 0.96998 * 120.00009 * 4.61636 * 5 3 2 35 35 H 1.08000 * 119.88997 * 0.25851 * 7 6 5 36 36 H 1.08004 * 119.88641 * 179.97438 * 8 7 6 37 37 H 1.07998 * 119.99830 * 179.97438 * 9 8 7 38 38 H 0.96994 * 120.00082 * 0.02562 * 13 11 10 39 39 H 1.09004 * 112.85022 * 25.33091 * 14 13 11 40 40 H 1.09001 * 113.61421 * 25.43275 * 15 14 13 41 41 H 1.09005 * 113.61541 * 156.33369 * 15 14 13 42 42 H 1.09001 * 113.68762 * 89.12390 * 16 15 14 43 43 H 1.08997 * 109.46696 * 32.49601 * 17 16 15 44 44 H 1.09001 * 109.46722 * 152.49336 * 17 16 15 45 45 H 0.97007 * 120.00041 * 0.02562 * 18 17 16 46 46 H 0.96999 * 119.99910 * 179.97438 * 22 21 19 47 47 H 1.09003 * 113.61238 * 203.66685 * 27 14 13 48 48 H 1.09000 * 113.61660 * 334.56908 * 27 14 13 49 49 H 1.08001 * 120.11123 * 359.69667 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8247 2.9827 0.0972 7 6 3.1210 4.0169 -0.5086 8 6 3.5814 5.3171 -0.4199 9 6 4.7427 5.5973 0.2714 10 6 5.4560 4.5659 0.8842 11 6 6.7007 4.8632 1.6250 12 8 7.3206 3.9634 2.1575 13 7 7.1479 6.1317 1.7096 14 6 8.3814 6.4262 2.4431 15 6 8.1427 7.1010 3.8041 16 6 8.2034 8.4464 3.0562 17 6 8.9529 9.5395 3.8206 18 7 8.0230 10.2377 4.7115 19 6 8.4708 11.2624 5.5016 20 1 9.5095 11.5563 5.4677 21 6 7.5898 11.9237 6.3462 22 7 6.3240 11.5654 6.3880 23 14 8.2008 13.3212 7.4247 24 1 8.0714 14.6057 6.6908 25 1 7.3908 13.3777 8.6680 26 1 9.6261 13.0913 7.7725 27 6 9.0641 7.7314 2.0013 28 6 4.9922 3.2535 0.7934 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9872 0.9326 -0.0685 35 1 2.2117 3.8038 -1.0509 36 1 3.0305 6.1165 -0.8932 37 1 5.0994 6.6145 0.3380 38 1 6.6531 6.8498 1.2850 39 1 9.0589 5.5736 2.4913 40 1 7.1653 6.8826 4.2343 41 1 8.9594 6.9577 4.5118 42 1 7.2375 8.7809 2.6777 43 1 9.7512 9.0885 4.4098 44 1 9.3805 10.2497 3.1128 45 1 7.0901 9.9736 4.7422 46 1 5.7084 12.0272 6.9784 47 1 10.1323 7.7601 2.2170 48 1 8.8302 8.0216 0.9771 49 1 5.5401 2.4513 1.2652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505499871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:14 Heat of formation + Delta-G solvation = -40.995478 kcal Electronic energy + Delta-G solvation = -28579.303552 eV Core-core repulsion = 24505.990554 eV Total energy + Delta-G solvation = -4073.312999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83389 -41.24183 -39.89916 -38.84743 -36.35083 -35.95408 -34.51468 -33.78402 -32.85763 -32.07543 -30.65965 -28.49908 -26.62718 -25.87779 -25.70580 -24.73479 -23.25874 -22.92415 -22.17792 -21.04722 -20.33732 -19.36757 -19.05741 -18.32693 -17.43081 -17.30586 -16.97374 -16.76834 -16.57916 -16.16597 -15.85587 -15.69878 -15.48839 -15.30958 -15.10490 -14.81211 -14.76097 -14.51396 -14.31532 -13.72952 -13.68299 -13.36981 -13.21354 -13.13858 -13.08690 -12.89362 -12.69912 -12.63825 -12.47598 -12.17958 -12.03807 -11.92479 -11.74804 -11.51446 -11.35880 -11.19187 -11.14676 -10.87668 -10.83603 -10.20078 -9.94746 -9.28892 -8.97074 -7.94622 -5.22783 -0.23857 0.18868 1.46552 1.47072 1.48921 1.57374 1.79543 1.90297 2.16661 2.56504 2.79623 3.38439 3.54799 3.58681 3.62709 3.64689 3.86019 3.93854 3.95733 4.05060 4.12973 4.17245 4.25841 4.34094 4.38761 4.43704 4.57087 4.73814 4.75234 4.81947 4.85935 4.89133 4.93225 4.99019 4.99700 5.05003 5.12835 5.16732 5.18365 5.26643 5.28020 5.34205 5.36905 5.41247 5.49737 5.66560 5.86128 6.28104 6.36116 6.46026 7.07613 7.11165 7.34065 8.12611 8.34556 9.28982 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.001719 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.546575 B =16280.430477 C =17248.860056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.505 3.495 4 O -0.564 6.564 5 N -0.665 5.665 6 C 0.129 3.871 7 C -0.106 4.106 8 C -0.107 4.107 9 C -0.095 4.095 10 C -0.130 4.130 11 C 0.561 3.439 12 O -0.576 6.576 13 N -0.694 5.694 14 C 0.126 3.874 15 C -0.144 4.144 16 C -0.112 4.112 17 C 0.159 3.841 18 N -0.745 5.745 19 C -0.246 4.246 20 H 0.076 0.924 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.974 3.026 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.270 1.270 27 C -0.114 4.114 28 C -0.091 4.091 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.429 0.571 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.413 0.587 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.020 0.980 44 H 0.023 0.977 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -25.327 -20.931 33.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.295 3.705 4 O -0.441 6.441 5 N -0.312 5.312 6 C 0.034 3.966 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.350 3.650 12 O -0.457 6.457 13 N -0.345 5.345 14 C 0.020 3.980 15 C -0.183 4.183 16 C -0.131 4.131 17 C 0.033 3.967 18 N -0.388 5.388 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.803 3.197 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.194 1.194 27 C -0.153 4.153 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.268 0.732 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.251 0.749 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.204 0.796 46 H 0.059 0.941 47 H 0.127 0.873 48 H 0.112 0.888 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.688 -25.263 -20.483 33.017 hybrid contribution -0.222 0.943 0.927 1.341 sum -5.909 -24.320 -19.556 31.762 Atomic orbital electron populations 1.21564 0.93505 1.02815 1.01924 1.21719 0.98074 0.90320 1.07208 1.21831 0.81116 0.93686 0.73825 1.90704 1.56092 1.47917 1.49433 1.43563 1.08381 1.06637 1.72589 1.17680 0.94837 0.85972 0.98063 1.21607 1.00155 0.92740 0.98104 1.21317 0.95748 0.96806 0.98671 1.21562 0.94839 0.99128 0.95930 1.19667 0.96201 0.94860 1.02631 1.18502 0.84597 0.82623 0.79312 1.90736 1.59450 1.46569 1.48916 1.45530 1.26217 1.08459 1.54289 1.21812 0.86175 0.98167 0.91838 1.23480 1.01763 0.96077 0.96966 1.22747 0.99663 0.93565 0.97090 1.20833 0.92161 0.92465 0.91209 1.42583 1.08862 1.39208 1.48112 1.19677 0.94559 1.08349 1.15191 0.90652 1.25577 0.95906 1.03069 1.02423 1.69821 1.03830 1.45330 1.43149 0.85133 0.77519 0.79253 0.77829 1.21255 1.22327 1.19439 1.23224 1.00446 0.92236 0.99346 1.20993 0.96237 0.96618 0.97423 0.93192 0.89545 0.93834 0.85521 0.86230 0.73186 0.84537 0.82611 0.83259 0.74918 0.88437 0.93277 0.89508 0.89614 0.96180 0.95901 0.79593 0.94094 0.87291 0.88759 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 71.98 0.66 -0.61 16 2 C -0.13 -0.78 6.42 29.85 0.19 -0.59 16 3 C 0.51 7.35 7.67 87.66 0.67 8.02 16 4 O -0.56 -13.19 13.42 -3.04 -0.04 -13.23 16 5 N -0.66 -8.27 5.33 -303.60 -1.62 -9.89 16 6 C 0.13 2.37 6.29 38.11 0.24 2.61 16 7 C -0.11 -2.03 8.70 22.44 0.20 -1.84 16 8 C -0.11 -1.78 10.02 22.21 0.22 -1.56 16 9 C -0.10 -1.66 9.54 22.54 0.21 -1.44 16 10 C -0.13 -2.82 5.87 -20.10 -0.12 -2.93 16 11 C 0.56 14.52 7.77 86.79 0.67 15.19 16 12 O -0.58 -18.84 15.96 -3.88 -0.06 -18.91 16 13 N -0.69 -15.41 5.21 -442.90 -2.31 -17.72 16 14 C 0.13 3.02 4.29 45.52 0.20 3.22 16 15 C -0.14 -4.30 7.45 31.21 0.23 -4.07 16 16 C -0.11 -3.32 3.65 -10.17 -0.04 -3.36 16 17 C 0.16 6.21 6.10 86.38 0.53 6.73 16 18 N -0.75 -38.21 5.60 -343.47 -1.92 -40.14 16 19 C -0.25 -13.93 9.99 84.04 0.84 -13.09 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 23 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 27 C -0.11 -2.41 7.38 31.12 0.23 -2.18 16 28 C -0.09 -1.86 9.51 22.66 0.22 -1.64 16 29 H 0.05 0.58 8.10 -2.39 -0.02 0.56 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.04 0.57 8.10 -2.39 -0.02 0.55 16 32 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.43 2.25 8.82 -92.71 -0.82 1.43 16 35 H 0.14 2.80 6.22 -2.91 -0.02 2.78 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.15 1.89 6.40 -2.91 -0.02 1.87 16 38 H 0.41 7.18 6.73 -92.71 -0.62 6.56 16 39 H 0.10 2.48 7.50 -2.39 -0.02 2.46 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.09 2.65 7.90 -2.38 -0.02 2.63 16 42 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.02 0.79 7.85 -2.39 -0.02 0.77 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.37 20.39 7.67 -92.70 -0.71 19.68 16 46 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.11 2.09 8.10 -2.39 -0.02 2.08 16 48 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.14 2.74 7.65 -2.91 -0.02 2.71 16 Total: -1.00 -79.91 407.06 0.82 -79.09 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -1.16 Total: 33.71 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.62 Total: -1.60 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.57 Total: -127.78 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.10 Total: -32.13 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -79.91 0.82 -79.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505499871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.096 kcal (2) G-P(sol) polarization free energy of solvation -79.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds