Wall clock time and date at job start Wed Apr 1 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00119 * 2 1 4 4 O 1.42903 * 109.47167 * 135.00226 * 3 2 1 5 5 C 1.35650 * 117.00026 * 180.02562 * 4 3 2 6 6 C 1.39343 * 120.53947 * 359.97420 * 5 4 3 7 7 C 1.38302 * 118.43831 * 180.02562 * 6 5 4 8 8 C 1.38765 * 119.44636 * 0.02562 * 7 6 5 9 9 N 1.31374 * 121.06537 * 359.74170 * 8 7 6 10 10 C 1.32866 * 121.69807 * 0.52480 * 9 8 7 11 11 C 1.47829 * 119.78569 * 179.75332 * 10 9 8 12 12 O 1.21551 * 119.99792 * 179.72764 * 11 10 9 13 13 N 1.34779 * 119.99889 * 359.72879 * 11 10 9 14 14 C 1.47025 * 125.64744 * 0.03676 * 13 11 10 15 15 C 1.54325 * 107.26722 * 181.02504 * 14 13 11 16 16 C 1.55158 * 102.94392 * 22.19606 * 15 14 13 17 17 H 1.08998 * 111.03652 * 82.58706 * 16 15 14 18 18 C 1.52996 * 111.00281 * 206.42263 * 16 15 14 19 19 C 1.52998 * 109.46929 * 178.65123 * 18 16 15 20 20 N 1.46506 * 109.47237 * 179.97438 * 19 18 16 21 21 C 1.36939 * 120.00073 * 179.72302 * 20 19 18 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00056 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 90.00225 * 25 23 21 27 27 H 1.48501 * 109.47275 * 210.00265 * 25 23 21 28 28 H 1.48499 * 109.47039 * 330.00065 * 25 23 21 29 29 C 1.47416 * 125.64852 * 180.02562 * 13 11 10 30 30 H 1.08001 * 120.00059 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00212 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00059 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47052 * 14.99930 * 3 2 1 34 34 H 1.08997 * 109.47426 * 255.00206 * 3 2 1 35 35 H 1.08003 * 120.78091 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.27601 * 179.97438 * 7 6 5 37 37 H 1.08003 * 119.46835 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.88668 * 300.44230 * 14 13 11 39 39 H 1.08997 * 109.88125 * 61.45556 * 14 13 11 40 40 H 1.09000 * 110.72241 * 263.82659 * 15 14 13 41 41 H 1.09003 * 110.72024 * 140.55779 * 15 14 13 42 42 H 1.09000 * 109.47441 * 58.65212 * 18 16 15 43 43 H 1.09002 * 109.47087 * 298.64658 * 18 16 15 44 44 H 1.09001 * 109.47671 * 60.00109 * 19 18 16 45 45 H 1.08998 * 109.47454 * 300.00107 * 19 18 16 46 46 H 0.97005 * 119.99811 * 0.02562 * 20 19 18 47 47 H 0.97000 * 119.99835 * 179.97438 * 24 23 21 48 48 H 1.09001 * 110.36817 * 37.06235 * 29 13 11 49 49 H 1.09001 * 110.45891 * 274.79101 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9077 2.3432 1.0787 6 6 3.6655 3.4752 0.3030 7 6 4.4889 4.5742 0.4666 8 6 5.5239 4.5198 1.3893 9 7 5.7309 3.4433 2.1132 10 6 4.9701 2.3611 1.9884 11 6 5.2443 1.1707 2.8209 12 8 4.5477 0.1804 2.7133 13 7 6.2665 1.1835 3.6991 14 6 7.1833 2.3093 3.9305 15 6 8.2015 1.8588 4.9992 16 6 8.1484 0.3113 4.8993 17 1 8.7794 -0.0503 4.0874 18 6 8.5429 -0.3378 6.2274 19 6 8.4462 -1.8594 6.0998 20 7 8.8246 -2.4810 7.3714 21 6 8.8082 -3.8444 7.4986 22 1 8.5167 -4.4614 6.6614 23 6 9.1662 -4.4333 8.7035 24 7 9.1500 -5.7438 8.8260 25 14 9.6710 -3.3662 10.1512 26 1 8.4714 -3.0274 10.9583 27 1 10.6433 -4.1053 10.9958 28 1 10.2995 -2.1175 9.6502 29 6 6.6505 0.0710 4.5869 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4868 -0.9926 35 1 2.8538 3.4938 -0.4092 36 1 4.3283 5.4670 -0.1195 37 1 6.1669 5.3780 1.5177 38 1 7.7030 2.5604 3.0059 39 1 6.6251 3.1744 4.2885 40 1 7.8935 2.1921 5.9902 41 1 9.1994 2.2266 4.7604 42 1 7.8696 0.0044 7.0133 43 1 9.5662 -0.0585 6.4784 44 1 9.1195 -2.2017 5.3140 45 1 7.4230 -2.1387 5.8487 46 1 9.0825 -1.9267 8.1245 47 1 9.4005 -6.1553 9.6679 48 1 6.5175 -0.8837 4.0780 49 1 6.0630 0.0958 5.5047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570014182.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:35 Heat of formation + Delta-G solvation = 11.784546 kcal Electronic energy + Delta-G solvation = -29429.474280 eV Core-core repulsion = 25358.449995 eV Total energy + Delta-G solvation = -4071.024285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.34088 -39.70827 -38.71202 -37.62401 -35.24090 -34.55503 -33.25131 -32.48243 -31.19807 -30.84946 -29.61205 -27.53237 -27.12232 -25.34737 -23.80267 -23.25765 -22.63540 -21.13359 -20.68918 -20.20058 -19.86415 -18.54146 -17.75426 -17.49470 -17.28578 -16.66347 -16.07394 -15.89898 -15.50188 -15.10834 -14.90039 -14.50661 -14.42058 -14.14241 -13.88630 -13.72560 -13.51742 -13.30306 -13.16021 -12.94205 -12.75514 -12.52730 -12.40680 -12.15076 -12.01323 -11.74244 -11.57359 -11.46738 -11.15252 -10.83726 -10.59789 -10.50788 -10.37666 -10.29347 -10.18413 -10.01777 -10.00499 -9.71642 -9.52225 -8.92617 -8.82341 -8.51034 -7.15826 -5.70223 -3.05358 0.27633 0.76303 1.60686 2.61391 2.76366 2.90820 3.42144 3.44811 3.49526 3.52943 3.83486 4.06879 4.16461 4.36002 4.44726 4.53464 4.59759 4.63873 4.65041 4.67522 4.77153 4.86915 4.95377 4.99648 5.29269 5.34955 5.40997 5.44957 5.46473 5.48007 5.58839 5.71237 5.76894 5.82693 5.90836 5.92786 5.99087 6.06330 6.11347 6.14536 6.15969 6.23350 6.32141 6.43428 6.77817 6.82520 6.85888 7.31624 7.52246 8.07167 8.16339 8.49033 9.28544 10.00863 10.20990 11.48392 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002128 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.189317 B =13152.946695 C =14932.450082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.152 4.152 3 C 0.079 3.921 4 O -0.266 6.266 5 C 0.140 3.860 6 C -0.178 4.178 7 C -0.107 4.107 8 C 0.054 3.946 9 N -0.414 5.414 10 C 0.049 3.951 11 C 0.581 3.419 12 O -0.514 6.514 13 N -0.603 5.603 14 C 0.120 3.880 15 C -0.134 4.134 16 C -0.094 4.094 17 H 0.086 0.914 18 C -0.118 4.118 19 C 0.154 3.846 20 N -0.758 5.758 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.001 3.999 24 N -0.936 5.936 25 Si 0.886 3.114 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.110 3.890 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.026 0.974 45 H 0.029 0.971 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.083 0.917 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 27.439 -21.958 37.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.004 3.996 4 O -0.176 6.176 5 C 0.089 3.911 6 C -0.205 4.205 7 C -0.127 4.127 8 C -0.107 4.107 9 N -0.126 5.126 10 C -0.090 4.090 11 C 0.367 3.633 12 O -0.389 6.389 13 N -0.336 5.336 14 C -0.003 4.003 15 C -0.172 4.172 16 C -0.114 4.114 17 H 0.104 0.896 18 C -0.156 4.156 19 C 0.027 3.973 20 N -0.403 5.403 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.194 4.194 24 N -0.584 5.584 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.011 4.011 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.101 0.899 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.737 26.383 -21.417 36.291 hybrid contribution -0.396 0.993 0.254 1.099 sum -13.133 27.376 -21.163 37.011 Atomic orbital electron populations 1.23873 0.95320 1.02599 0.99000 1.22629 0.95615 0.97761 1.00999 1.22000 0.87986 0.97539 0.92097 1.86467 1.40766 1.33262 1.57066 1.20001 0.90645 0.86963 0.93455 1.21756 1.03066 0.93417 1.02219 1.22211 0.94351 0.98490 0.97661 1.22763 0.97564 0.96474 0.93899 1.67916 1.24366 0.98785 1.21508 1.20648 0.94412 0.94893 0.98996 1.17227 0.80356 0.86137 0.79535 1.90870 1.47707 1.32956 1.67344 1.48282 1.30040 1.16936 1.38361 1.22057 0.90686 0.88781 0.98768 1.22829 0.99360 0.95715 0.99286 1.22315 0.95232 0.94752 0.99088 0.89571 1.21730 1.01749 0.96810 0.95348 1.20678 0.97912 0.89499 0.89198 1.42728 1.82984 1.04505 1.10110 1.19091 1.38125 0.81258 0.98675 0.89228 1.24691 1.01781 0.95419 0.97557 1.69713 1.55006 1.07989 1.25705 0.86515 0.78316 0.79952 0.83572 1.21116 1.21787 1.20331 1.22415 0.94845 0.90249 0.93633 0.88385 0.87208 0.85766 0.91359 0.90854 0.83695 0.83957 0.81739 0.90885 0.91031 0.90553 0.90067 0.91664 0.91371 0.95594 0.95353 0.80743 0.93134 0.89886 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 14.31 29.02 0.42 -0.66 16 2 C -0.15 -1.22 9.89 -36.02 -0.36 -1.57 16 3 C 0.08 0.60 5.17 36.01 0.19 0.79 16 4 O -0.27 -3.21 8.18 -40.60 -0.33 -3.54 16 5 C 0.14 1.53 6.71 -38.56 -0.26 1.27 16 6 C -0.18 -1.24 9.13 -39.15 -0.36 -1.59 16 7 C -0.11 -0.58 10.10 -39.36 -0.40 -0.98 16 8 C 0.05 0.36 11.17 -17.55 -0.20 0.17 16 9 N -0.41 -4.19 6.84 -9.71 -0.07 -4.26 16 10 C 0.05 0.62 6.73 -82.88 -0.56 0.06 16 11 C 0.58 8.93 7.83 -12.34 -0.10 8.84 16 12 O -0.51 -9.57 15.39 -16.63 -0.26 -9.82 16 13 N -0.60 -8.30 3.33 -171.66 -0.57 -8.88 16 14 C 0.12 1.29 5.40 -3.06 -0.02 1.27 16 15 C -0.13 -1.35 6.42 -24.90 -0.16 -1.50 16 16 C -0.09 -1.19 3.07 -88.48 -0.27 -1.46 16 17 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.12 -1.77 4.84 -26.73 -0.13 -1.90 16 19 C 0.15 3.06 6.11 -4.04 -0.02 3.04 16 20 N -0.76 -18.71 5.41 -59.91 -0.32 -19.04 16 21 C -0.24 -7.12 10.47 -15.06 -0.16 -7.27 16 22 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 23 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 24 N -0.94 -30.24 13.97 55.49 0.78 -29.46 16 25 Si 0.89 22.66 27.73 -169.99 -4.71 17.95 16 26 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 29 C 0.11 1.57 5.57 -2.55 -0.01 1.56 16 30 H 0.10 0.47 7.90 -52.49 -0.41 0.05 16 31 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.07 0.39 7.42 -51.93 -0.39 0.01 16 34 H 0.07 0.41 7.70 -51.93 -0.40 0.01 16 35 H 0.15 0.60 6.46 -52.48 -0.34 0.26 16 36 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 37 H 0.17 0.60 8.06 -52.48 -0.42 0.17 16 38 H 0.07 0.75 7.42 -51.93 -0.39 0.37 16 39 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 40 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.58 7.46 -51.93 -0.39 0.19 16 46 H 0.36 8.58 5.53 -40.82 -0.23 8.35 16 47 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 48 H 0.08 1.31 7.96 -51.93 -0.41 0.90 16 49 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -37.22 400.69 -9.51 -46.72 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.57 Total: 4.30 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.49 Total: -0.01 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.19 Total: -61.64 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.59 Total: -13.36 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.22 -9.51 -46.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570014182.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.508 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds