Wall clock time and date at job start Wed Apr 1 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00119 * 2 1 4 4 O 1.42903 * 109.47167 * 135.00226 * 3 2 1 5 5 C 1.35650 * 117.00026 * 180.02562 * 4 3 2 6 6 C 1.39343 * 120.53947 * 359.97420 * 5 4 3 7 7 C 1.38302 * 118.43831 * 180.02562 * 6 5 4 8 8 C 1.38765 * 119.44636 * 0.02562 * 7 6 5 9 9 N 1.31374 * 121.06537 * 359.74170 * 8 7 6 10 10 C 1.32866 * 121.69807 * 0.52480 * 9 8 7 11 11 C 1.47829 * 119.78569 * 179.75332 * 10 9 8 12 12 O 1.21551 * 119.99792 * 179.72764 * 11 10 9 13 13 N 1.34779 * 119.99889 * 359.72879 * 11 10 9 14 14 C 1.47025 * 125.64744 * 0.03676 * 13 11 10 15 15 C 1.54325 * 107.26722 * 181.02504 * 14 13 11 16 16 C 1.55158 * 102.94392 * 22.19606 * 15 14 13 17 17 H 1.08998 * 111.03652 * 82.58706 * 16 15 14 18 18 C 1.52996 * 111.00281 * 206.42263 * 16 15 14 19 19 C 1.52998 * 109.46929 * 178.65123 * 18 16 15 20 20 N 1.46506 * 109.47237 * 179.97438 * 19 18 16 21 21 C 1.36939 * 120.00073 * 179.72302 * 20 19 18 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00056 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 90.00225 * 25 23 21 27 27 H 1.48501 * 109.47275 * 210.00265 * 25 23 21 28 28 H 1.48499 * 109.47039 * 330.00065 * 25 23 21 29 29 C 1.47416 * 125.64852 * 180.02562 * 13 11 10 30 30 H 1.08001 * 120.00059 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00212 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00059 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47052 * 14.99930 * 3 2 1 34 34 H 1.08997 * 109.47426 * 255.00206 * 3 2 1 35 35 H 1.08003 * 120.78091 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.27601 * 179.97438 * 7 6 5 37 37 H 1.08003 * 119.46835 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.88668 * 300.44230 * 14 13 11 39 39 H 1.08997 * 109.88125 * 61.45556 * 14 13 11 40 40 H 1.09000 * 110.72241 * 263.82659 * 15 14 13 41 41 H 1.09003 * 110.72024 * 140.55779 * 15 14 13 42 42 H 1.09000 * 109.47441 * 58.65212 * 18 16 15 43 43 H 1.09002 * 109.47087 * 298.64658 * 18 16 15 44 44 H 1.09001 * 109.47671 * 60.00109 * 19 18 16 45 45 H 1.08998 * 109.47454 * 300.00107 * 19 18 16 46 46 H 0.97005 * 119.99811 * 0.02562 * 20 19 18 47 47 H 0.97000 * 119.99835 * 179.97438 * 24 23 21 48 48 H 1.09001 * 110.36817 * 37.06235 * 29 13 11 49 49 H 1.09001 * 110.45891 * 274.79101 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9077 2.3432 1.0787 6 6 3.6655 3.4752 0.3030 7 6 4.4889 4.5742 0.4666 8 6 5.5239 4.5198 1.3893 9 7 5.7309 3.4433 2.1132 10 6 4.9701 2.3611 1.9884 11 6 5.2443 1.1707 2.8209 12 8 4.5477 0.1804 2.7133 13 7 6.2665 1.1835 3.6991 14 6 7.1833 2.3093 3.9305 15 6 8.2015 1.8588 4.9992 16 6 8.1484 0.3113 4.8993 17 1 8.7794 -0.0503 4.0874 18 6 8.5429 -0.3378 6.2274 19 6 8.4462 -1.8594 6.0998 20 7 8.8246 -2.4810 7.3714 21 6 8.8082 -3.8444 7.4986 22 1 8.5167 -4.4614 6.6614 23 6 9.1662 -4.4333 8.7035 24 7 9.1500 -5.7438 8.8260 25 14 9.6710 -3.3662 10.1512 26 1 8.4714 -3.0274 10.9583 27 1 10.6433 -4.1053 10.9958 28 1 10.2995 -2.1175 9.6502 29 6 6.6505 0.0710 4.5869 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4868 -0.9926 35 1 2.8538 3.4938 -0.4092 36 1 4.3283 5.4670 -0.1195 37 1 6.1669 5.3780 1.5177 38 1 7.7030 2.5604 3.0059 39 1 6.6251 3.1744 4.2885 40 1 7.8935 2.1921 5.9902 41 1 9.1994 2.2266 4.7604 42 1 7.8696 0.0044 7.0133 43 1 9.5662 -0.0585 6.4784 44 1 9.1195 -2.2017 5.3140 45 1 7.4230 -2.1387 5.8487 46 1 9.0825 -1.9267 8.1245 47 1 9.4005 -6.1553 9.6679 48 1 6.5175 -0.8837 4.0780 49 1 6.0630 0.0958 5.5047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570014182.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:33 Heat of formation + Delta-G solvation = -12.715795 kcal Electronic energy + Delta-G solvation = -29430.536695 eV Core-core repulsion = 25358.449995 eV Total energy + Delta-G solvation = -4072.086700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.05813 -40.67479 -39.37260 -38.77716 -36.98813 -35.13477 -34.60913 -33.53155 -32.79129 -31.60909 -30.81806 -28.81171 -27.73178 -26.48699 -25.07132 -23.99331 -23.85803 -22.70631 -21.48731 -21.15693 -20.72659 -19.63151 -19.18165 -18.61879 -18.01045 -17.42910 -16.98006 -16.81717 -16.57329 -16.29522 -15.84323 -15.78072 -15.64654 -15.22867 -14.97359 -14.80566 -14.59797 -14.34375 -14.14865 -14.04928 -13.84505 -13.66378 -13.60090 -13.10033 -13.05894 -13.00989 -12.86987 -12.59428 -12.34134 -12.04887 -12.02413 -11.89897 -11.79327 -11.53311 -11.50489 -11.23917 -10.97074 -10.83519 -10.63284 -10.41229 -9.78033 -9.42039 -9.31666 -8.04067 -5.38704 -0.38351 0.21035 1.05102 1.37388 1.42894 1.50315 1.71813 1.88398 2.23346 2.48498 2.79809 3.08664 3.26729 3.46253 3.52905 3.61018 3.66794 3.75682 3.87971 4.00664 4.01835 4.03107 4.10235 4.24525 4.31880 4.39309 4.44684 4.45406 4.50266 4.53672 4.66771 4.75979 4.85668 4.88057 4.89965 4.99335 5.01058 5.02778 5.14353 5.23351 5.31690 5.38382 5.42912 5.48702 5.55489 5.61886 5.73531 6.18660 6.19975 6.45812 6.72327 7.06604 7.11047 7.81842 8.03592 9.17741 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002128 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.189317 B =13152.946695 C =14932.450082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.076 3.924 4 O -0.305 6.305 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.084 4.084 8 C 0.054 3.946 9 N -0.428 5.428 10 C 0.007 3.993 11 C 0.568 3.432 12 O -0.568 6.568 13 N -0.606 5.606 14 C 0.123 3.877 15 C -0.121 4.121 16 C -0.085 4.085 17 H 0.087 0.913 18 C -0.103 4.103 19 C 0.149 3.851 20 N -0.759 5.759 21 C -0.241 4.241 22 H 0.049 0.951 23 C -0.070 4.070 24 N -0.986 5.986 25 Si 0.964 3.036 26 H -0.277 1.277 27 H -0.293 1.293 28 H -0.245 1.245 29 C 0.107 3.893 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.176 0.824 36 H 0.189 0.811 37 H 0.202 0.798 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.021 0.979 45 H 0.014 0.986 46 H 0.369 0.631 47 H 0.259 0.741 48 H 0.052 0.948 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 33.106 -22.524 41.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.202 4.202 3 C 0.002 3.998 4 O -0.216 6.216 5 C 0.071 3.929 6 C -0.200 4.200 7 C -0.104 4.104 8 C -0.108 4.108 9 N -0.140 5.140 10 C -0.129 4.129 11 C 0.357 3.643 12 O -0.447 6.447 13 N -0.338 5.338 14 C 0.002 3.998 15 C -0.158 4.158 16 C -0.104 4.104 17 H 0.105 0.895 18 C -0.141 4.141 19 C 0.023 3.977 20 N -0.405 5.405 21 C -0.372 4.372 22 H 0.067 0.933 23 C -0.261 4.261 24 N -0.636 5.636 25 Si 0.790 3.210 26 H -0.203 1.203 27 H -0.220 1.220 28 H -0.169 1.169 29 C -0.015 4.015 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.193 0.807 36 H 0.207 0.793 37 H 0.219 0.781 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.039 0.961 45 H 0.032 0.968 46 H 0.202 0.798 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.312 32.099 -22.006 40.819 hybrid contribution -0.630 -0.746 0.249 1.008 sum -12.942 31.353 -21.757 40.297 Atomic orbital electron populations 1.24101 0.94645 1.03924 0.96425 1.22664 0.96464 0.97548 1.03494 1.22217 0.87567 0.97737 0.92320 1.86423 1.42002 1.34716 1.58495 1.20271 0.90471 0.87985 0.94178 1.22155 1.03962 0.92242 1.01610 1.22763 0.92250 0.99104 0.96282 1.23520 0.98143 0.96154 0.93006 1.67825 1.24379 0.99026 1.22732 1.20248 0.96895 0.94944 1.00766 1.17924 0.79865 0.86806 0.79664 1.90813 1.49593 1.35174 1.69108 1.48431 1.30160 1.17465 1.37745 1.22193 0.90293 0.87911 0.99428 1.22836 1.00592 0.92774 0.99636 1.22195 0.93410 0.97024 0.97816 0.89478 1.21591 1.03027 0.92644 0.96805 1.20851 0.96673 0.93060 0.87083 1.42705 1.82976 1.02759 1.12029 1.19048 1.37276 0.83310 0.97598 0.93306 1.25655 1.02314 0.96983 1.01119 1.69916 1.56606 1.10442 1.26680 0.85278 0.78052 0.78889 0.78783 1.20336 1.21987 1.16912 1.22333 0.96410 0.89657 0.93138 0.86204 0.86652 0.88126 0.89137 0.89028 0.80709 0.79337 0.78129 0.90155 0.90209 0.89521 0.87354 0.90950 0.89635 0.96135 0.96769 0.79777 0.93244 0.92939 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 14.31 67.79 0.97 -0.91 16 2 C -0.18 -3.15 9.89 25.65 0.25 -2.90 16 3 C 0.08 1.15 5.17 71.24 0.37 1.52 16 4 O -0.31 -7.86 8.18 -68.66 -0.56 -8.42 16 5 C 0.12 2.66 6.71 22.93 0.15 2.82 16 6 C -0.17 -1.91 9.13 22.55 0.21 -1.71 16 7 C -0.08 -0.52 10.10 22.41 0.23 -0.29 16 8 C 0.05 0.52 11.17 84.89 0.95 1.47 16 9 N -0.43 -8.00 6.84 -184.63 -1.26 -9.26 16 10 C 0.01 0.19 6.73 41.92 0.28 0.47 16 11 C 0.57 18.88 7.83 86.78 0.68 19.56 16 12 O -0.57 -23.55 15.39 17.11 0.26 -23.29 16 13 N -0.61 -17.41 3.33 -815.28 -2.71 -20.12 16 14 C 0.12 2.48 5.40 86.73 0.47 2.94 16 15 C -0.12 -2.09 6.42 31.78 0.20 -1.88 16 16 C -0.08 -2.06 3.07 -9.41 -0.03 -2.09 16 17 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 18 C -0.10 -2.91 4.84 30.59 0.15 -2.76 16 19 C 0.15 6.03 6.11 86.38 0.53 6.56 16 20 N -0.76 -37.42 5.41 -343.44 -1.86 -39.28 16 21 C -0.24 -14.66 10.47 84.03 0.88 -13.78 16 22 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 23 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.99 -65.75 13.97 21.65 0.30 -65.45 16 25 Si 0.96 46.62 27.73 68.60 1.90 48.52 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.24 -10.46 6.52 99.48 0.65 -9.81 16 29 C 0.11 3.25 5.57 86.85 0.48 3.73 16 30 H 0.12 0.91 7.90 -2.91 -0.02 0.89 16 31 H 0.12 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.10 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.09 0.89 7.42 -2.39 -0.02 0.87 16 34 H 0.09 0.95 7.70 -2.39 -0.02 0.93 16 35 H 0.18 0.75 6.46 -2.91 -0.02 0.73 16 36 H 0.19 -0.54 8.06 -2.91 -0.02 -0.57 16 37 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.08 1.51 7.42 -2.39 -0.02 1.49 16 39 H 0.08 1.49 7.52 -2.39 -0.02 1.48 16 40 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.01 0.62 7.46 -2.39 -0.02 0.60 16 46 H 0.37 16.81 5.53 -92.70 -0.51 16.29 16 47 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 48 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 49 H 0.06 2.01 8.00 -2.39 -0.02 1.99 16 Total: -1.00 -88.94 400.69 3.69 -85.25 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.38 Total: 23.11 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 7.24 Total: 8.93 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -5.53 Total: -134.11 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.30 Total: -31.71 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Total: -88.94 3.69 -85.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570014182.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.537 kcal (2) G-P(sol) polarization free energy of solvation -88.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds