Wall clock time and date at job start Wed Apr 1 2020 04:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00145 * 2 1 4 4 O 1.42898 * 109.47172 * 134.99694 * 3 2 1 5 5 C 1.35649 * 117.00187 * 179.97438 * 4 3 2 6 6 C 1.39341 * 120.53938 * 0.02562 * 5 4 3 7 7 C 1.38305 * 118.44265 * 179.97438 * 6 5 4 8 8 C 1.38761 * 119.44166 * 359.97438 * 7 6 5 9 9 N 1.31382 * 121.06979 * 359.72511 * 8 7 6 10 10 C 1.32855 * 121.68956 * 0.56492 * 9 8 7 11 11 C 1.47836 * 119.77945 * 179.71220 * 10 9 8 12 12 O 1.21556 * 119.99922 * 179.72832 * 11 10 9 13 13 N 1.34773 * 119.99971 * 359.72797 * 11 10 9 14 14 C 1.46500 * 120.00187 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.05518 * 326.41830 * 14 13 11 16 16 C 1.53875 * 110.03317 * 87.83042 * 14 13 11 17 17 C 1.54263 * 106.59838 * 119.28395 * 16 14 13 18 18 C 1.55030 * 104.28052 * 23.52488 * 17 16 14 19 19 C 1.54263 * 110.03773 * 204.99934 * 14 13 11 20 20 H 1.09001 * 110.48393 * 335.91735 * 19 14 13 21 21 C 1.52997 * 110.48585 * 98.42482 * 19 14 13 22 22 N 1.46506 * 109.47289 * 183.16233 * 21 19 14 23 23 C 1.36930 * 120.00258 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99823 * 0.02562 * 23 22 21 25 25 C 1.38815 * 120.00439 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99225 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00268 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46935 * 90.00259 * 27 25 23 29 29 H 1.48507 * 109.47218 * 210.00042 * 27 25 23 30 30 H 1.48492 * 109.47204 * 330.00019 * 27 25 23 31 31 H 1.08003 * 119.99960 * 179.97438 * 1 2 3 32 32 H 1.07996 * 119.99986 * 0.02562 * 1 2 3 33 33 H 1.08004 * 120.00255 * 179.97438 * 2 1 3 34 34 H 1.08993 * 109.47003 * 14.99660 * 3 2 1 35 35 H 1.08998 * 109.47088 * 254.99293 * 3 2 1 36 36 H 1.08005 * 120.78118 * 359.97438 * 6 5 4 37 37 H 1.07994 * 120.27832 * 179.97438 * 7 6 5 38 38 H 1.08007 * 119.46605 * 180.02562 * 8 7 6 39 39 H 0.97001 * 120.00046 * 359.97438 * 13 11 10 40 40 H 1.08998 * 110.03643 * 238.57170 * 16 14 13 41 41 H 1.09008 * 110.03160 * 359.95564 * 16 14 13 42 42 H 1.09003 * 110.48597 * 142.28800 * 17 16 14 43 43 H 1.09000 * 110.49099 * 264.80438 * 17 16 14 44 44 H 1.08997 * 110.87595 * 203.90175 * 18 17 16 45 45 H 1.08999 * 110.70059 * 80.47850 * 18 17 16 46 46 H 1.09001 * 109.47289 * 63.16105 * 21 19 14 47 47 H 1.09004 * 109.47261 * 303.16361 * 21 19 14 48 48 H 0.97001 * 119.99251 * 0.02562 * 22 21 19 49 49 H 0.97000 * 119.99950 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9082 2.3428 1.0780 6 6 3.6661 3.4748 0.3023 7 6 4.4896 4.5739 0.4659 8 6 5.5238 4.5198 1.3894 9 7 5.7299 3.4437 2.1144 10 6 4.9694 2.3616 1.9891 11 6 5.2431 1.1714 2.8222 12 8 4.5468 0.1809 2.7144 13 7 6.2648 1.1845 3.7011 14 6 6.5357 0.0053 4.5271 15 1 5.6024 -0.5010 4.7733 16 6 7.4760 -0.9568 3.7800 17 6 8.7466 -1.0910 4.6444 18 6 8.2758 -0.7257 6.0756 19 6 7.2677 0.4220 5.8194 20 1 7.7932 1.3657 5.6728 21 6 6.2793 0.5360 6.9817 22 7 6.9837 1.0050 8.1776 23 6 6.2989 1.1832 9.3499 24 1 5.2395 0.9776 9.3930 25 6 6.9664 1.6271 10.4832 26 7 8.2575 1.8772 10.4307 27 14 6.0320 1.8709 12.0822 28 1 6.0548 0.6098 12.8659 29 1 6.6726 2.9548 12.8697 30 1 4.6258 2.2419 11.7821 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3855 2.1160 0.2659 35 1 2.4756 1.4867 -0.9926 36 1 2.8545 3.4934 -0.4100 37 1 4.3290 5.4666 -0.1203 38 1 6.1669 5.3781 1.5177 39 1 6.8207 1.9748 3.7869 40 1 6.9990 -1.9300 3.6638 41 1 7.7301 -0.5466 2.8026 42 1 9.1217 -2.1140 4.6151 43 1 9.5137 -0.3945 4.3059 44 1 9.1116 -0.3774 6.6824 45 1 7.7821 -1.5753 6.5474 46 1 5.8373 -0.4405 7.1799 47 1 5.4930 1.2447 6.7218 48 1 7.9353 1.1894 8.1389 49 1 8.7240 2.1878 11.2224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699034510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:58 Heat of formation + Delta-G solvation = -8.472268 kcal Electronic energy + Delta-G solvation = -29812.128254 eV Core-core repulsion = 25740.225568 eV Total energy + Delta-G solvation = -4071.902687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18961 -39.52808 -38.63659 -37.66492 -34.55774 -34.35914 -33.47626 -32.50428 -31.32046 -30.86272 -28.50920 -27.62147 -27.08143 -24.95277 -24.19261 -23.20260 -22.08568 -21.27162 -20.37266 -19.92559 -19.67519 -18.59146 -17.79475 -17.38521 -16.90189 -16.55965 -16.10484 -15.52496 -15.38534 -14.91517 -14.75647 -14.56632 -14.34399 -14.18975 -13.73637 -13.57599 -13.38163 -13.22833 -13.14816 -13.10624 -12.74096 -12.38208 -11.99495 -11.93481 -11.61805 -11.42736 -11.26696 -10.87751 -10.76188 -10.69300 -10.42186 -10.27539 -10.27197 -10.19635 -10.19112 -9.95848 -9.90752 -9.67330 -9.59747 -8.88338 -8.79907 -8.65364 -6.83862 -5.70009 -2.97578 0.40218 0.88813 1.65041 2.74833 2.88324 3.20207 3.48283 3.53275 3.55124 3.68439 4.02987 4.18912 4.32270 4.43944 4.59970 4.61951 4.64270 4.71809 4.83510 4.87556 4.94781 5.00632 5.15054 5.19188 5.42479 5.52958 5.57184 5.59170 5.65014 5.74227 5.77815 5.89811 5.93341 5.98990 6.04250 6.14060 6.15676 6.20365 6.29922 6.33073 6.40645 6.62779 6.65624 6.73688 6.87681 6.89154 7.02380 7.41919 7.76790 7.77855 8.38338 8.49382 9.60521 10.19190 10.54669 11.53101 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.002416 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.743776 B =11588.540786 C =11848.599949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.138 3.862 6 C -0.178 4.178 7 C -0.108 4.108 8 C 0.059 3.941 9 N -0.417 5.417 10 C 0.048 3.952 11 C 0.570 3.430 12 O -0.518 6.518 13 N -0.701 5.701 14 C 0.146 3.854 15 H 0.093 0.907 16 C -0.130 4.130 17 C -0.125 4.125 18 C -0.110 4.110 19 C -0.102 4.102 20 H 0.080 0.920 21 C 0.161 3.839 22 N -0.730 5.730 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.408 0.592 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 1.924 -28.026 29.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.003 3.997 4 O -0.175 6.175 5 C 0.087 3.913 6 C -0.205 4.205 7 C -0.128 4.128 8 C -0.102 4.102 9 N -0.129 5.129 10 C -0.092 4.092 11 C 0.354 3.646 12 O -0.393 6.393 13 N -0.352 5.352 14 C 0.042 3.958 15 H 0.111 0.889 16 C -0.169 4.169 17 C -0.162 4.162 18 C -0.148 4.148 19 C -0.121 4.121 20 H 0.098 0.902 21 C 0.034 3.966 22 N -0.374 5.374 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.038 0.962 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.321 0.942 -27.249 28.507 hybrid contribution -0.736 1.015 0.110 1.259 sum -9.058 1.957 -27.139 28.678 Atomic orbital electron populations 1.23870 0.95344 1.02581 0.99069 1.22617 0.95589 0.97738 1.00951 1.21985 0.88108 0.97483 0.92114 1.86455 1.40701 1.33346 1.57031 1.20013 0.90740 0.86948 0.93612 1.21747 1.02989 0.93468 1.02286 1.22208 0.94365 0.98484 0.97767 1.22737 0.97541 0.96353 0.93589 1.67651 1.24864 0.98852 1.21519 1.20792 0.94457 0.95007 0.98907 1.17591 0.81029 0.85852 0.80147 1.90828 1.48282 1.32870 1.67284 1.45995 1.32034 1.18251 1.38964 1.21729 0.99307 0.85423 0.89371 0.88864 1.22539 0.96057 0.99567 0.98755 1.22405 0.96918 1.01046 0.95864 1.22467 0.98753 0.97898 0.95636 1.22423 0.96871 0.99301 0.93514 0.90178 1.20679 0.93122 0.96740 0.86093 1.42323 1.09016 1.80095 1.05993 1.19242 0.92873 1.36748 0.87783 0.91300 1.24717 0.95837 1.02547 0.98027 1.69659 1.07408 1.52485 1.28821 0.86196 0.78788 0.77350 0.83934 1.21782 1.21833 1.20825 0.87290 0.88344 0.85884 0.91356 0.90942 0.83762 0.83930 0.81657 0.75533 0.91361 0.91783 0.91902 0.91871 0.90709 0.91073 0.96151 0.96467 0.78261 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 14.31 29.02 0.42 -0.71 16 2 C -0.15 -1.24 9.89 -36.02 -0.36 -1.60 16 3 C 0.08 0.64 5.17 36.01 0.19 0.83 16 4 O -0.27 -3.36 8.18 -40.60 -0.33 -3.69 16 5 C 0.14 1.65 6.71 -38.56 -0.26 1.39 16 6 C -0.18 -1.46 9.13 -39.15 -0.36 -1.82 16 7 C -0.11 -0.75 10.10 -39.36 -0.40 -1.15 16 8 C 0.06 0.51 11.17 -17.55 -0.20 0.32 16 9 N -0.42 -5.09 9.54 -9.71 -0.09 -5.19 16 10 C 0.05 0.66 6.76 -82.88 -0.56 0.10 16 11 C 0.57 9.11 7.80 -12.33 -0.10 9.02 16 12 O -0.52 -9.60 14.79 -16.63 -0.25 -9.84 16 13 N -0.70 -10.44 4.97 -53.67 -0.27 -10.71 16 14 C 0.15 2.25 2.82 -66.81 -0.19 2.07 16 15 H 0.09 1.60 7.26 -51.93 -0.38 1.22 16 16 C -0.13 -1.76 6.59 -25.61 -0.17 -1.93 16 17 C -0.12 -1.61 6.83 -25.00 -0.17 -1.78 16 18 C -0.11 -1.73 6.11 -24.66 -0.15 -1.88 16 19 C -0.10 -1.72 2.60 -88.96 -0.23 -1.95 16 20 H 0.08 1.36 7.74 -51.93 -0.40 0.96 16 21 C 0.16 3.43 5.54 -4.04 -0.02 3.41 16 22 N -0.73 -18.97 5.47 -59.90 -0.33 -19.30 16 23 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 24 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 25 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 26 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 27 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.11 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.10 0.52 7.90 -52.49 -0.41 0.10 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.07 0.45 7.42 -51.93 -0.39 0.06 16 35 H 0.07 0.44 7.70 -51.93 -0.40 0.04 16 36 H 0.14 0.74 6.46 -52.48 -0.34 0.41 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.41 5.68 7.68 -40.82 -0.31 5.37 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.85 7.92 -51.92 -0.41 0.44 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 46 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.34 7.58 -40.82 -0.31 10.03 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 406.70 15.07 6.13 6.13 Total: -1.00 -35.03 406.70 -9.77 -44.80 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.54 Total: 11.01 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.80 Total: -3.19 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.04 Total: -63.17 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.58 Total: -13.53 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.03 -9.77 -44.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.325 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds