Wall clock time and date at job start Wed Apr 1 2020 04:47:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50698 * 119.99749 * 2 1
4 4 O 1.42902 * 109.46834 * 134.99789 * 3 2 1
5 5 C 1.35652 * 117.00072 * 179.97438 * 4 3 2
6 6 C 1.39346 * 120.53727 * 0.02897 * 5 4 3
7 7 C 1.38304 * 118.43777 * 179.97438 * 6 5 4
8 8 C 1.38765 * 119.44663 * 359.97438 * 7 6 5
9 9 N 1.31381 * 121.06374 * 359.71779 * 8 7 6
10 10 C 1.32858 * 121.69680 * 0.57327 * 9 8 7
11 11 C 1.47826 * 119.78434 * 179.70265 * 10 9 8
12 12 O 1.21555 * 120.00181 * 179.72829 * 11 10 9
13 13 N 1.34779 * 120.00056 * 359.73382 * 11 10 9
14 14 C 1.46497 * 120.00198 * 179.97438 * 13 11 10
15 15 H 1.09000 * 110.05389 * 33.58294 * 14 13 11
16 16 C 1.54264 * 110.03481 * 272.16450 * 14 13 11
17 17 C 1.54884 * 104.19626 * 217.10273 * 16 14 13
18 18 C 1.54888 * 102.74825 * 37.94683 * 17 16 14
19 19 C 1.53875 * 110.02987 * 154.99722 * 14 13 11
20 20 H 1.08999 * 110.07480 * 238.59240 * 19 14 13
21 21 C 1.52997 * 110.03603 * 0.02562 * 19 14 13
22 22 N 1.46505 * 109.47212 * 183.61804 * 21 19 14
23 23 C 1.36936 * 119.99992 * 179.97438 * 22 21 19
24 24 H 1.08006 * 119.99834 * 0.02562 * 23 22 21
25 25 C 1.38801 * 120.00093 * 180.02562 * 23 22 21
26 26 N 1.31622 * 120.00145 * 180.02562 * 25 23 22
27 27 Si 1.86803 * 120.00180 * 0.02562 * 25 23 22
28 28 H 1.48492 * 109.47586 * 89.99558 * 27 25 23
29 29 H 1.48505 * 109.47293 * 210.00502 * 27 25 23
30 30 H 1.48505 * 109.46772 * 329.99807 * 27 25 23
31 31 H 1.08002 * 120.00234 * 0.02562 * 1 2 3
32 32 H 1.08003 * 119.99462 * 179.97438 * 1 2 3
33 33 H 1.07997 * 120.00197 * 180.02562 * 2 1 3
34 34 H 1.08999 * 109.47427 * 15.00087 * 3 2 1
35 35 H 1.08995 * 109.47459 * 254.99721 * 3 2 1
36 36 H 1.08000 * 120.78071 * 359.94824 * 6 5 4
37 37 H 1.08000 * 120.27553 * 180.02562 * 7 6 5
38 38 H 1.07998 * 119.46712 * 180.02562 * 8 7 6
39 39 H 0.97002 * 119.99670 * 359.97438 * 13 11 10
40 40 H 1.09006 * 110.48568 * 98.42547 * 16 14 13
41 41 H 1.09002 * 110.59831 * 335.84383 * 16 14 13
42 42 H 1.09000 * 110.75793 * 279.62703 * 17 16 14
43 43 H 1.09007 * 110.91424 * 156.33006 * 17 16 14
44 44 H 1.08999 * 110.48584 * 203.37764 * 18 17 16
45 45 H 1.08992 * 110.60190 * 80.78874 * 18 17 16
46 46 H 1.09002 * 109.47153 * 63.61796 * 21 19 14
47 47 H 1.09001 * 109.46832 * 303.61987 * 21 19 14
48 48 H 0.96996 * 119.99606 * 0.02562 * 22 21 19
49 49 H 0.97010 * 119.99864 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 8 3.1266 1.2413 0.9527
5 6 3.9082 2.3429 1.0781
6 6 3.6660 3.4749 0.3024
7 6 4.4894 4.5740 0.4660
8 6 5.5238 4.5200 1.3895
9 7 5.7298 3.4439 2.1145
10 6 4.9694 2.3616 1.9893
11 6 5.2432 1.1714 2.8221
12 8 4.5469 0.1809 2.7143
13 7 6.2648 1.1845 3.7011
14 6 6.5358 0.0052 4.5269
15 1 6.2964 -0.9023 3.9726
16 6 5.7044 0.0665 5.8249
17 6 6.6454 -0.5189 6.9068
18 6 8.0299 0.0399 6.4942
19 6 8.0144 -0.0117 4.9525
20 1 8.4934 -0.9270 4.6047
21 6 8.7385 1.2087 4.3805
22 7 10.1618 1.1356 4.7200
23 6 11.0150 2.1254 4.3108
24 1 10.6386 2.9602 3.7381
25 6 12.3635 2.0560 4.6320
26 7 13.1836 3.0076 4.2391
27 14 13.0148 0.6119 5.6220
28 1 13.4336 -0.4728 4.6983
29 1 14.1803 1.0513 6.4305
30 1 11.9478 0.1091 6.5243
31 1 -0.5400 0.9353 -0.0004
32 1 -0.5399 -0.9354 -0.0004
33 1 1.8500 -0.9353 -0.0004
34 1 1.3855 2.1161 0.2660
35 1 2.4755 1.4868 -0.9926
36 1 2.8546 3.4934 -0.4101
37 1 4.3282 5.4671 -0.1195
38 1 6.1667 5.3782 1.5178
39 1 6.8206 1.9749 3.7869
40 1 4.8053 -0.5427 5.7311
41 1 5.4424 1.0972 6.0642
42 1 6.6427 -1.6083 6.8727
43 1 6.3659 -0.1642 7.8989
44 1 8.8280 -0.5888 6.8890
45 1 8.1477 1.0666 6.8404
46 1 8.3101 2.1170 4.8042
47 1 8.6238 1.2242 3.2966
48 1 10.4998 0.3857 5.2340
49 1 14.1261 2.9589 4.4633
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699034512.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:06
Heat of formation + Delta-G solvation = 3.903639 kcal
Electronic energy + Delta-G solvation = -30243.392977 eV
Core-core repulsion = 26172.026950 eV
Total energy + Delta-G solvation = -4071.366027 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.13339 -39.68173 -38.58490 -37.75518 -34.54234 -34.44437 -33.55081 -32.45837
-31.49248 -30.79062 -28.94829 -27.65612 -27.04646 -24.86110 -24.42884 -23.12677
-22.08753 -21.22137 -20.48646 -20.23413 -19.07074 -18.62190 -17.94836 -17.54072
-17.15841 -16.47090 -15.89512 -15.56994 -15.31108 -15.02835 -14.81084 -14.55830
-14.40123 -14.16712 -13.88301 -13.75592 -13.50357 -13.32905 -13.09356 -13.04911
-12.61636 -12.33040 -12.19067 -11.89204 -11.73112 -11.54895 -11.41567 -10.91236
-10.88851 -10.83060 -10.45916 -10.42343 -10.30759 -10.19112 -10.11008 -9.98562
-9.95303 -9.60603 -9.53943 -8.91365 -8.80804 -8.59951 -7.18596 -5.72636
-3.07623 0.48357 0.97858 1.65090 2.80180 2.92261 3.24229 3.40495
3.43515 3.48206 3.75372 4.11690 4.25376 4.36814 4.48309 4.60831
4.62893 4.65839 4.74826 4.77756 4.82268 4.95452 5.02088 5.08547
5.25217 5.39448 5.42101 5.53999 5.56707 5.64270 5.67346 5.68510
5.74978 5.83657 5.88254 5.96807 6.06771 6.07650 6.13482 6.18903
6.21689 6.29305 6.40611 6.53503 6.65960 6.76798 6.80841 6.93178
7.51226 7.82774 8.04262 8.40715 8.46488 9.25802 9.98168 10.18419
11.45821
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012706 B = 0.002769 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2203.132182 B =10109.361819 C =11630.798074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.149 4.149
3 C 0.078 3.922
4 O -0.267 6.267
5 C 0.136 3.864
6 C -0.179 4.179
7 C -0.108 4.108
8 C 0.062 3.938
9 N -0.414 5.414
10 C 0.046 3.954
11 C 0.570 3.430
12 O -0.523 6.523
13 N -0.704 5.704
14 C 0.150 3.850
15 H 0.090 0.910
16 C -0.132 4.132
17 C -0.123 4.123
18 C -0.115 4.115
19 C -0.112 4.112
20 H 0.081 0.919
21 C 0.161 3.839
22 N -0.752 5.752
23 C -0.240 4.240
24 H 0.091 0.909
25 C 0.003 3.997
26 N -0.935 5.935
27 Si 0.884 3.116
28 H -0.285 1.285
29 H -0.292 1.292
30 H -0.276 1.276
31 H 0.098 0.902
32 H 0.108 0.892
33 H 0.123 0.877
34 H 0.068 0.932
35 H 0.073 0.927
36 H 0.144 0.856
37 H 0.143 0.857
38 H 0.168 0.832
39 H 0.417 0.583
40 H 0.067 0.933
41 H 0.069 0.931
42 H 0.065 0.935
43 H 0.065 0.935
44 H 0.065 0.935
45 H 0.074 0.926
46 H 0.028 0.972
47 H 0.031 0.969
48 H 0.361 0.639
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.278 -1.328 -6.881 27.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.167 4.167
3 C 0.003 3.997
4 O -0.177 6.177
5 C 0.085 3.915
6 C -0.205 4.205
7 C -0.128 4.128
8 C -0.098 4.098
9 N -0.126 5.126
10 C -0.093 4.093
11 C 0.355 3.645
12 O -0.398 6.398
13 N -0.359 5.359
14 C 0.045 3.955
15 H 0.108 0.892
16 C -0.170 4.170
17 C -0.161 4.161
18 C -0.153 4.153
19 C -0.132 4.132
20 H 0.100 0.900
21 C 0.034 3.966
22 N -0.398 5.398
23 C -0.370 4.370
24 H 0.108 0.892
25 C -0.193 4.193
26 N -0.583 5.583
27 Si 0.714 3.286
28 H -0.212 1.212
29 H -0.218 1.218
30 H -0.203 1.203
31 H 0.116 0.884
32 H 0.126 0.874
33 H 0.141 0.859
34 H 0.086 0.914
35 H 0.091 0.909
36 H 0.162 0.838
37 H 0.161 0.839
38 H 0.185 0.815
39 H 0.257 0.743
40 H 0.086 0.914
41 H 0.088 0.912
42 H 0.084 0.916
43 H 0.084 0.916
44 H 0.084 0.916
45 H 0.093 0.907
46 H 0.046 0.954
47 H 0.049 0.951
48 H 0.194 0.806
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -26.010 -2.090 -6.342 26.853
hybrid contribution 0.164 -0.240 -0.205 0.356
sum -25.845 -2.330 -6.547 26.763
Atomic orbital electron populations
1.23857 0.95336 1.02509 0.99408 1.22634 0.95569 0.97814 1.00660
1.21976 0.88136 0.97327 0.92303 1.86442 1.40746 1.33456 1.57016
1.20000 0.90843 0.86894 0.93763 1.21730 1.03073 0.93490 1.02241
1.22229 0.94357 0.98545 0.97637 1.22797 0.97228 0.96395 0.93423
1.67688 1.24077 0.98813 1.21985 1.20759 0.94353 0.95081 0.99073
1.17624 0.81168 0.85913 0.79833 1.90804 1.48337 1.32770 1.67923
1.46233 1.32074 1.18655 1.38901 1.21630 0.94225 0.88695 0.90962
0.89154 1.22765 0.98208 1.01610 0.94437 1.22471 0.95375 1.00144
0.98136 1.22403 0.96458 1.02052 0.94401 1.22275 0.93764 1.00817
0.96297 0.90038 1.20667 0.84793 0.93928 0.97212 1.42678 1.03569
1.27040 1.66509 1.19069 0.88855 1.00893 1.28216 0.89162 1.24662
0.95984 0.97845 1.00770 1.69707 1.03737 1.33797 1.51087 0.86555
0.78435 0.83205 0.80406 1.21178 1.21813 1.20254 0.88371 0.87359
0.85900 0.91419 0.90880 0.83816 0.83885 0.81457 0.74295 0.91400
0.91189 0.91589 0.91581 0.91620 0.90693 0.95425 0.95089 0.80636
0.93149
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.09 14.31 29.01 0.42 -0.68 16
2 C -0.15 -1.21 9.89 -36.03 -0.36 -1.57 16
3 C 0.08 0.65 5.17 36.00 0.19 0.84 16
4 O -0.27 -3.43 8.18 -40.61 -0.33 -3.76 16
5 C 0.14 1.70 6.71 -38.56 -0.26 1.45 16
6 C -0.18 -1.59 9.13 -39.15 -0.36 -1.95 16
7 C -0.11 -0.87 10.10 -39.36 -0.40 -1.27 16
8 C 0.06 0.65 11.17 -17.55 -0.20 0.46 16
9 N -0.41 -5.74 9.54 -9.71 -0.09 -5.83 16
10 C 0.05 0.68 6.76 -82.89 -0.56 0.12 16
11 C 0.57 9.35 7.80 -12.34 -0.10 9.26 16
12 O -0.52 -9.57 14.79 -16.63 -0.25 -9.81 16
13 N -0.70 -10.97 4.40 -53.67 -0.24 -11.21 16
14 C 0.15 2.22 3.23 -66.81 -0.22 2.01 16
15 H 0.09 1.39 7.56 -51.93 -0.39 0.99 16
16 C -0.13 -1.72 6.53 -25.08 -0.16 -1.89 16
17 C -0.12 -1.50 6.91 -24.74 -0.17 -1.67 16
18 C -0.12 -1.70 6.02 -25.07 -0.15 -1.85 16
19 C -0.11 -1.79 2.98 -89.50 -0.27 -2.05 16
20 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
21 C 0.16 3.16 4.18 -4.04 -0.02 3.14 16
22 N -0.75 -18.00 5.23 -59.91 -0.31 -18.32 16
23 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16
24 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16
25 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16
26 N -0.94 -29.59 13.97 55.49 0.78 -28.82 16
27 Si 0.88 22.34 27.74 -169.99 -4.71 17.63 16
28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
30 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16
31 H 0.10 0.49 7.90 -52.49 -0.41 0.07 16
32 H 0.11 0.56 8.06 -52.48 -0.42 0.13 16
33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16
34 H 0.07 0.44 7.42 -51.93 -0.39 0.05 16
35 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16
36 H 0.14 0.83 6.46 -52.49 -0.34 0.49 16
37 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16
38 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16
39 H 0.42 6.64 5.20 -40.82 -0.21 6.43 16
40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
41 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16
42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16
44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
45 H 0.07 1.19 7.78 -51.93 -0.40 0.79 16
46 H 0.03 0.55 7.06 -51.93 -0.37 0.18 16
47 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16
48 H 0.36 8.44 5.37 -40.82 -0.22 8.22 16
49 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16
LS Contribution 398.75 15.07 6.01 6.01
Total: -1.00 -35.18 398.75 -9.35 -44.53
By element:
Atomic # 1 Polarization: 19.62 SS G_CDS: -7.34 Total: 12.28 kcal
Atomic # 6 Polarization: 0.16 SS G_CDS: -2.86 Total: -2.69 kcal
Atomic # 7 Polarization: -64.31 SS G_CDS: 0.13 Total: -64.18 kcal
Atomic # 8 Polarization: -12.99 SS G_CDS: -0.58 Total: -13.57 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -35.18 -9.35 -44.53 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699034512.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.429 kcal
(2) G-P(sol) polarization free energy of solvation -35.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.252 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds