Wall clock time and date at job start Wed Apr 1 2020 04:47:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50698 * 119.99749 * 2 1
4 4 O 1.42902 * 109.46834 * 134.99789 * 3 2 1
5 5 C 1.35652 * 117.00072 * 179.97438 * 4 3 2
6 6 C 1.39346 * 120.53727 * 0.02897 * 5 4 3
7 7 C 1.38304 * 118.43777 * 179.97438 * 6 5 4
8 8 C 1.38765 * 119.44663 * 359.97438 * 7 6 5
9 9 N 1.31381 * 121.06374 * 359.71779 * 8 7 6
10 10 C 1.32858 * 121.69680 * 0.57327 * 9 8 7
11 11 C 1.47826 * 119.78434 * 179.70265 * 10 9 8
12 12 O 1.21555 * 120.00181 * 179.72829 * 11 10 9
13 13 N 1.34779 * 120.00056 * 359.73382 * 11 10 9
14 14 C 1.46497 * 120.00198 * 179.97438 * 13 11 10
15 15 H 1.09000 * 110.05389 * 33.58294 * 14 13 11
16 16 C 1.54264 * 110.03481 * 272.16450 * 14 13 11
17 17 C 1.54884 * 104.19626 * 217.10273 * 16 14 13
18 18 C 1.54888 * 102.74825 * 37.94683 * 17 16 14
19 19 C 1.53875 * 110.02987 * 154.99722 * 14 13 11
20 20 H 1.08999 * 110.07480 * 238.59240 * 19 14 13
21 21 C 1.52997 * 110.03603 * 0.02562 * 19 14 13
22 22 N 1.46505 * 109.47212 * 183.61804 * 21 19 14
23 23 C 1.36936 * 119.99992 * 179.97438 * 22 21 19
24 24 H 1.08006 * 119.99834 * 0.02562 * 23 22 21
25 25 C 1.38801 * 120.00093 * 180.02562 * 23 22 21
26 26 N 1.31622 * 120.00145 * 180.02562 * 25 23 22
27 27 Si 1.86803 * 120.00180 * 0.02562 * 25 23 22
28 28 H 1.48492 * 109.47586 * 89.99558 * 27 25 23
29 29 H 1.48505 * 109.47293 * 210.00502 * 27 25 23
30 30 H 1.48505 * 109.46772 * 329.99807 * 27 25 23
31 31 H 1.08002 * 120.00234 * 0.02562 * 1 2 3
32 32 H 1.08003 * 119.99462 * 179.97438 * 1 2 3
33 33 H 1.07997 * 120.00197 * 180.02562 * 2 1 3
34 34 H 1.08999 * 109.47427 * 15.00087 * 3 2 1
35 35 H 1.08995 * 109.47459 * 254.99721 * 3 2 1
36 36 H 1.08000 * 120.78071 * 359.94824 * 6 5 4
37 37 H 1.08000 * 120.27553 * 180.02562 * 7 6 5
38 38 H 1.07998 * 119.46712 * 180.02562 * 8 7 6
39 39 H 0.97002 * 119.99670 * 359.97438 * 13 11 10
40 40 H 1.09006 * 110.48568 * 98.42547 * 16 14 13
41 41 H 1.09002 * 110.59831 * 335.84383 * 16 14 13
42 42 H 1.09000 * 110.75793 * 279.62703 * 17 16 14
43 43 H 1.09007 * 110.91424 * 156.33006 * 17 16 14
44 44 H 1.08999 * 110.48584 * 203.37764 * 18 17 16
45 45 H 1.08992 * 110.60190 * 80.78874 * 18 17 16
46 46 H 1.09002 * 109.47153 * 63.61796 * 21 19 14
47 47 H 1.09001 * 109.46832 * 303.61987 * 21 19 14
48 48 H 0.96996 * 119.99606 * 0.02562 * 22 21 19
49 49 H 0.97010 * 119.99864 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 8 3.1266 1.2413 0.9527
5 6 3.9082 2.3429 1.0781
6 6 3.6660 3.4749 0.3024
7 6 4.4894 4.5740 0.4660
8 6 5.5238 4.5200 1.3895
9 7 5.7298 3.4439 2.1145
10 6 4.9694 2.3616 1.9893
11 6 5.2432 1.1714 2.8221
12 8 4.5469 0.1809 2.7143
13 7 6.2648 1.1845 3.7011
14 6 6.5358 0.0052 4.5269
15 1 6.2964 -0.9023 3.9726
16 6 5.7044 0.0665 5.8249
17 6 6.6454 -0.5189 6.9068
18 6 8.0299 0.0399 6.4942
19 6 8.0144 -0.0117 4.9525
20 1 8.4934 -0.9270 4.6047
21 6 8.7385 1.2087 4.3805
22 7 10.1618 1.1356 4.7200
23 6 11.0150 2.1254 4.3108
24 1 10.6386 2.9602 3.7381
25 6 12.3635 2.0560 4.6320
26 7 13.1836 3.0076 4.2391
27 14 13.0148 0.6119 5.6220
28 1 13.4336 -0.4728 4.6983
29 1 14.1803 1.0513 6.4305
30 1 11.9478 0.1091 6.5243
31 1 -0.5400 0.9353 -0.0004
32 1 -0.5399 -0.9354 -0.0004
33 1 1.8500 -0.9353 -0.0004
34 1 1.3855 2.1161 0.2660
35 1 2.4755 1.4868 -0.9926
36 1 2.8546 3.4934 -0.4101
37 1 4.3282 5.4671 -0.1195
38 1 6.1667 5.3782 1.5178
39 1 6.8206 1.9749 3.7869
40 1 4.8053 -0.5427 5.7311
41 1 5.4424 1.0972 6.0642
42 1 6.6427 -1.6083 6.8727
43 1 6.3659 -0.1642 7.8989
44 1 8.8280 -0.5888 6.8890
45 1 8.1477 1.0666 6.8404
46 1 8.3101 2.1170 4.8042
47 1 8.6238 1.2242 3.2966
48 1 10.4998 0.3857 5.2340
49 1 14.1261 2.9589 4.4633
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699034512.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:04
Heat of formation + Delta-G solvation = -18.916802 kcal
Electronic energy + Delta-G solvation = -30244.382546 eV
Core-core repulsion = 26172.026950 eV
Total energy + Delta-G solvation = -4072.355596 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-42.04032 -40.83839 -39.41495 -39.00422 -36.36671 -35.13000 -34.69692 -33.56181
-33.29678 -31.63794 -30.56777 -28.74922 -27.69882 -26.41471 -25.52735 -23.97562
-23.89997 -22.28028 -21.58117 -20.89153 -20.57173 -19.68645 -19.32742 -18.85904
-18.07310 -17.23788 -17.07839 -16.74752 -16.39356 -16.16768 -16.09361 -15.71312
-15.58238 -15.40534 -15.11150 -14.94332 -14.70541 -14.60285 -14.31752 -14.07733
-13.73598 -13.62310 -13.49311 -13.05571 -12.90969 -12.81651 -12.57304 -12.34073
-12.06055 -11.99038 -11.96033 -11.81971 -11.75737 -11.58757 -11.47639 -11.26352
-10.97200 -10.86795 -10.68942 -10.42141 -10.05725 -9.50753 -9.29816 -8.01426
-5.35262 -0.37729 0.19647 1.08785 1.38288 1.41958 1.49259 1.74346
2.10498 2.24757 2.49394 2.80934 3.17465 3.29436 3.38012 3.55434
3.65387 3.67110 3.77624 3.89572 3.98095 4.00845 4.05551 4.14912
4.28395 4.34775 4.42657 4.47121 4.48276 4.48904 4.54174 4.60084
4.75324 4.84959 4.89604 4.92832 4.97872 4.98710 5.07123 5.20577
5.22343 5.31324 5.38673 5.47857 5.55994 5.59682 5.64965 5.76843
6.19258 6.21807 6.43777 6.80109 7.08250 7.19780 7.83073 8.04393
9.19945
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012706 B = 0.002769 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2203.132182 B =10109.361819 C =11630.798074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.180 4.180
3 C 0.072 3.928
4 O -0.297 6.297
5 C 0.127 3.873
6 C -0.171 4.171
7 C -0.084 4.084
8 C 0.049 3.951
9 N -0.447 5.447
10 C 0.002 3.998
11 C 0.565 3.435
12 O -0.552 6.552
13 N -0.706 5.706
14 C 0.151 3.849
15 H 0.084 0.916
16 C -0.125 4.125
17 C -0.110 4.110
18 C -0.115 4.115
19 C -0.104 4.104
20 H 0.085 0.915
21 C 0.165 3.835
22 N -0.752 5.752
23 C -0.233 4.233
24 H 0.056 0.944
25 C -0.064 4.064
26 N -0.983 5.983
27 Si 0.954 3.046
28 H -0.280 1.280
29 H -0.295 1.295
30 H -0.247 1.247
31 H 0.117 0.883
32 H 0.118 0.882
33 H 0.105 0.895
34 H 0.090 0.910
35 H 0.089 0.911
36 H 0.182 0.818
37 H 0.190 0.810
38 H 0.187 0.813
39 H 0.413 0.587
40 H 0.072 0.928
41 H 0.065 0.935
42 H 0.082 0.918
43 H 0.083 0.917
44 H 0.070 0.930
45 H 0.061 0.939
46 H 0.027 0.973
47 H 0.017 0.983
48 H 0.367 0.633
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.454 -1.563 -6.834 29.305
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.198 4.198
3 C -0.002 4.002
4 O -0.208 6.208
5 C 0.076 3.924
6 C -0.197 4.197
7 C -0.104 4.104
8 C -0.113 4.113
9 N -0.159 5.159
10 C -0.135 4.135
11 C 0.351 3.649
12 O -0.430 6.430
13 N -0.359 5.359
14 C 0.046 3.954
15 H 0.102 0.898
16 C -0.164 4.164
17 C -0.148 4.148
18 C -0.153 4.153
19 C -0.123 4.123
20 H 0.103 0.897
21 C 0.039 3.961
22 N -0.398 5.398
23 C -0.364 4.364
24 H 0.074 0.926
25 C -0.255 4.255
26 N -0.633 5.633
27 Si 0.781 3.219
28 H -0.207 1.207
29 H -0.221 1.221
30 H -0.172 1.172
31 H 0.135 0.865
32 H 0.136 0.864
33 H 0.123 0.877
34 H 0.108 0.892
35 H 0.107 0.893
36 H 0.199 0.801
37 H 0.207 0.793
38 H 0.204 0.796
39 H 0.252 0.748
40 H 0.091 0.909
41 H 0.084 0.916
42 H 0.100 0.900
43 H 0.102 0.898
44 H 0.089 0.911
45 H 0.080 0.920
46 H 0.045 0.955
47 H 0.035 0.965
48 H 0.201 0.799
49 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -28.238 -2.360 -6.284 29.025
hybrid contribution 0.714 -0.024 -0.382 0.810
sum -27.524 -2.383 -6.666 28.420
Atomic orbital electron populations
1.24101 0.94626 1.03904 0.96491 1.22636 0.96370 0.97368 1.03425
1.22258 0.87587 0.98071 0.92296 1.86402 1.41820 1.34203 1.58398
1.20174 0.90359 0.88009 0.93862 1.22173 1.03785 0.92076 1.01642
1.22709 0.92117 0.99581 0.95991 1.23343 0.98418 0.95969 0.93598
1.67584 1.24958 0.99657 1.23664 1.20535 0.96714 0.95073 1.01131
1.18034 0.80679 0.86445 0.79731 1.90759 1.49321 1.34023 1.68943
1.46266 1.32006 1.18575 1.39090 1.21660 0.93750 0.88331 0.91703
0.89818 1.22708 0.98339 1.01613 0.93730 1.22427 0.92973 1.00975
0.98385 1.22386 0.98369 1.01598 0.92936 1.22202 0.93884 0.98823
0.97439 0.89677 1.20710 0.82954 0.95907 0.96529 1.42635 1.04715
1.26066 1.66352 1.19023 0.89663 1.00728 1.27000 0.92641 1.25507
0.96245 1.01154 1.02638 1.69891 1.04016 1.36353 1.53087 0.85418
0.78114 0.79305 0.79055 1.20679 1.22146 1.17171 0.86482 0.86387
0.87725 0.89178 0.89277 0.80103 0.79309 0.79582 0.74763 0.90942
0.91632 0.89954 0.89813 0.91120 0.92042 0.95543 0.96478 0.79938
0.93357
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.67 14.31 67.78 0.97 -0.70 16
2 C -0.18 -2.87 9.89 25.64 0.25 -2.61 16
3 C 0.07 1.11 5.17 71.24 0.37 1.48 16
4 O -0.30 -7.75 8.18 -68.68 -0.56 -8.31 16
5 C 0.13 3.17 6.71 22.93 0.15 3.33 16
6 C -0.17 -2.60 9.13 22.55 0.21 -2.40 16
7 C -0.08 -1.10 10.10 22.41 0.23 -0.88 16
8 C 0.05 0.97 11.17 84.89 0.95 1.92 16
9 N -0.45 -12.81 9.54 -184.63 -1.76 -14.57 16
10 C 0.00 0.07 6.76 41.92 0.28 0.35 16
11 C 0.56 19.64 7.80 86.78 0.68 20.32 16
12 O -0.55 -21.35 14.79 17.10 0.25 -21.10 16
13 N -0.71 -23.17 4.40 -441.99 -1.94 -25.11 16
14 C 0.15 4.52 3.23 45.72 0.15 4.67 16
15 H 0.08 2.63 7.56 -2.39 -0.02 2.61 16
16 C -0.13 -3.19 6.53 31.67 0.21 -2.99 16
17 C -0.11 -2.42 6.91 31.88 0.22 -2.20 16
18 C -0.12 -3.21 6.02 31.67 0.19 -3.02 16
19 C -0.10 -3.29 2.98 -10.07 -0.03 -3.32 16
20 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
21 C 0.17 6.62 4.18 86.38 0.36 6.98 16
22 N -0.75 -36.07 5.23 -343.45 -1.80 -37.86 16
23 C -0.23 -13.64 10.47 84.03 0.88 -12.76 16
24 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16
25 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16
26 N -0.98 -63.84 13.97 21.65 0.30 -63.54 16
27 Si 0.95 46.02 27.74 68.60 1.90 47.92 16
28 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16
29 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16
30 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16
31 H 0.12 0.82 7.90 -2.91 -0.02 0.79 16
32 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16
33 H 0.10 1.98 8.06 -2.91 -0.02 1.96 16
34 H 0.09 0.93 7.42 -2.39 -0.02 0.92 16
35 H 0.09 1.02 7.70 -2.39 -0.02 1.00 16
36 H 0.18 1.31 6.46 -2.91 -0.02 1.29 16
37 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16
38 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16
39 H 0.41 14.03 5.20 -92.71 -0.48 13.55 16
40 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16
41 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16
42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
43 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16
44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
45 H 0.06 1.89 7.78 -2.39 -0.02 1.87 16
46 H 0.03 1.08 7.06 -2.39 -0.02 1.07 16
47 H 0.02 0.74 7.51 -2.39 -0.02 0.72 16
48 H 0.37 16.65 5.37 -92.71 -0.50 16.15 16
49 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16
Total: -1.00 -80.62 398.75 2.85 -77.77
By element:
Atomic # 1 Polarization: 40.07 SS G_CDS: -0.07 Total: 39.99 kcal
Atomic # 6 Polarization: -1.73 SS G_CDS: 6.53 Total: 4.80 kcal
Atomic # 7 Polarization: -135.88 SS G_CDS: -5.20 Total: -141.08 kcal
Atomic # 8 Polarization: -29.10 SS G_CDS: -0.31 Total: -29.41 kcal
Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal
Total: -80.62 2.85 -77.77 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699034512.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.853 kcal
(2) G-P(sol) polarization free energy of solvation -80.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.917 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds