Wall clock time and date at job start Wed Apr 1 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46969 * 2 1 4 4 O 1.21287 * 120.00103 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.39954 * 119.99610 * 174.88873 * 5 3 2 7 7 C 1.38988 * 119.99532 * 215.27769 * 6 5 3 8 8 C 1.38215 * 120.22498 * 180.02562 * 7 6 5 9 9 C 1.38025 * 120.21749 * 359.74899 * 8 7 6 10 10 C 1.39577 * 119.99559 * 0.50413 * 9 8 7 11 11 C 1.47859 * 120.10935 * 179.77238 * 10 9 8 12 12 O 1.21555 * 120.00434 * 179.72460 * 11 10 9 13 13 N 1.34782 * 120.00305 * 359.72045 * 11 10 9 14 14 C 1.46496 * 120.00064 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46795 * 175.05145 * 14 13 11 16 16 N 1.46502 * 112.84839 * 286.68455 * 15 14 13 17 17 C 1.36936 * 119.99884 * 304.25104 * 16 15 14 18 18 H 1.07995 * 120.00246 * 4.86686 * 17 16 15 19 19 C 1.38820 * 119.99596 * 184.86418 * 17 16 15 20 20 N 1.31623 * 119.99631 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00213 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46963 * 90.00150 * 21 19 17 23 23 H 1.48504 * 109.47279 * 210.00118 * 21 19 17 24 24 H 1.48501 * 109.47386 * 330.00001 * 21 19 17 25 25 C 1.53782 * 113.61654 * 155.38553 * 15 14 13 26 26 C 1.53779 * 87.08146 * 220.01723 * 25 15 14 27 27 C 1.53774 * 113.61979 * 57.88361 * 15 14 13 28 28 C 1.38591 * 120.00446 * 35.30020 * 6 5 3 29 29 H 1.09002 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46554 * 299.99499 * 1 2 3 31 31 H 1.08997 * 109.47079 * 59.99462 * 1 2 3 32 32 H 1.08998 * 109.47026 * 240.00321 * 2 1 3 33 33 H 1.09000 * 109.47468 * 119.99884 * 2 1 3 34 34 H 0.96997 * 119.99779 * 354.88901 * 5 3 2 35 35 H 1.08000 * 119.89137 * 359.97438 * 7 6 5 36 36 H 1.07994 * 119.89201 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.99971 * 180.25823 * 9 8 7 38 38 H 0.97001 * 119.99460 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47012 * 295.04504 * 14 13 11 40 40 H 1.08996 * 109.47358 * 55.04945 * 14 13 11 41 41 H 0.97004 * 120.00045 * 124.24508 * 16 15 14 42 42 H 0.96994 * 119.99508 * 179.97438 * 20 19 17 43 43 H 1.09004 * 113.61185 * 334.55894 * 25 15 14 44 44 H 1.08998 * 113.61998 * 105.46111 * 25 15 14 45 45 H 1.09010 * 113.61037 * 270.88032 * 26 25 15 46 46 H 1.08996 * 113.61368 * 139.97985 * 26 25 15 47 47 H 1.09001 * 113.61528 * 254.53242 * 27 15 14 48 48 H 1.09001 * 113.61210 * 25.43112 * 27 15 14 49 49 H 1.08004 * 120.11058 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8247 2.9820 -0.1085 7 6 4.9938 3.2484 -0.8112 8 6 5.4599 4.5450 -0.9204 9 6 4.7645 5.5846 -0.3367 10 6 3.5922 5.3268 0.3757 11 6 2.8479 6.4380 1.0063 12 8 1.8245 6.2120 1.6220 13 7 3.3043 7.7016 0.8986 14 6 2.5672 8.8024 1.5239 15 6 3.3562 10.1030 1.3591 16 7 4.5357 10.1664 2.2258 17 6 4.4000 10.0094 3.5793 18 1 3.4371 9.7608 4.0003 19 6 5.5004 10.1696 4.4103 20 7 5.3699 10.0191 5.7114 21 14 7.1662 10.5988 3.6821 22 1 7.3125 12.0752 3.6172 23 1 8.2407 10.0319 4.5362 24 1 7.2697 10.0304 2.3141 25 6 2.4805 11.3659 1.4141 26 6 3.3518 11.9242 0.2765 27 6 3.6485 10.4647 -0.1066 28 6 3.1219 4.0182 0.4856 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9871 0.9332 0.0739 35 1 5.5405 2.4394 -1.2729 36 1 6.3692 4.7458 -1.4674 37 1 5.1296 6.5969 -0.4277 38 1 4.1208 7.8821 0.4070 39 1 1.5932 8.9054 1.0457 40 1 2.4308 8.5921 2.5847 41 1 5.4128 10.3197 1.8407 42 1 6.1389 10.1307 6.2919 43 1 1.4441 11.1916 1.1248 44 1 2.5728 11.9210 2.3476 45 1 4.2280 12.4707 0.6257 46 1 2.7862 12.4679 -0.4800 47 1 4.6838 10.2923 -0.4007 48 1 2.9315 10.0440 -0.8115 49 1 2.2136 3.8132 1.0328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717152321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:53 Heat of formation + Delta-G solvation = -8.592138 kcal Electronic energy + Delta-G solvation = -29999.241959 eV Core-core repulsion = 25927.334075 eV Total energy + Delta-G solvation = -4071.907885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.84946 -39.75185 -38.86063 -37.85421 -35.02556 -33.96305 -33.31138 -33.19104 -31.25395 -30.57675 -29.83079 -27.41717 -25.33994 -25.12678 -24.18303 -23.25786 -22.52178 -21.60118 -20.50741 -20.19593 -18.62299 -18.01754 -17.66424 -17.49447 -16.45495 -16.15282 -15.97925 -15.67610 -15.17819 -14.70431 -14.56199 -14.45119 -14.29908 -14.21010 -13.84737 -13.61461 -13.39523 -12.96224 -12.86608 -12.72919 -12.65037 -12.14526 -12.11773 -12.01755 -11.89251 -11.68425 -11.52755 -11.45142 -11.32312 -10.93076 -10.60706 -10.46897 -10.19662 -10.14690 -10.00768 -9.65392 -9.61446 -9.49069 -9.04267 -8.92393 -8.50920 -8.36223 -7.32882 -5.78687 -3.16407 0.80251 1.21452 2.29148 2.70618 3.09274 3.31410 3.35514 3.41882 3.54023 3.95284 4.29976 4.54956 4.64541 4.69299 4.71970 4.75838 4.97887 5.02636 5.05204 5.08857 5.11558 5.19601 5.31091 5.36185 5.39885 5.43916 5.44440 5.58335 5.67981 5.76761 5.91514 5.96629 6.02109 6.07961 6.11504 6.15754 6.19688 6.23803 6.26189 6.35035 6.55230 6.66490 6.80629 6.84280 6.87891 6.99947 7.06041 7.83647 7.93130 7.98240 8.39975 8.62024 9.16809 9.88093 10.06290 11.39208 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.002606 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.974882 B =10742.134495 C =11196.910707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.510 6.510 5 N -0.676 5.676 6 C 0.130 3.870 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.099 4.099 10 C -0.106 4.106 11 C 0.552 3.448 12 O -0.538 6.538 13 N -0.703 5.703 14 C 0.121 3.879 15 C 0.180 3.820 16 N -0.725 5.725 17 C -0.240 4.240 18 H 0.093 0.907 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.279 1.279 25 C -0.151 4.151 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.064 4.064 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.396 0.604 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.364 0.636 42 H 0.259 0.741 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -17.483 -18.193 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.383 6.383 5 N -0.322 5.322 6 C 0.036 3.964 7 C -0.146 4.146 8 C -0.127 4.127 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.338 3.662 12 O -0.416 6.416 13 N -0.353 5.353 14 C -0.004 4.004 15 C 0.088 3.912 16 N -0.367 5.367 17 C -0.370 4.370 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.205 1.205 25 C -0.192 4.192 26 C -0.169 4.169 27 C -0.187 4.187 28 C -0.084 4.084 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.231 0.769 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.198 0.802 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.695 -17.032 -17.480 24.554 hybrid contribution 2.243 0.001 -0.511 2.301 sum -0.451 -17.032 -17.991 24.778 Atomic orbital electron populations 1.21560 0.92594 1.01827 1.03783 1.21634 0.99067 0.92792 1.04558 1.21090 0.81573 0.92515 0.75541 1.90792 1.54923 1.46135 1.46476 1.43532 1.08014 1.06990 1.73671 1.17612 0.95591 0.84447 0.98710 1.21020 0.96689 0.97681 0.99240 1.20860 0.99999 0.91755 1.00092 1.21363 0.94057 0.99779 0.96686 1.19977 0.96354 0.94033 1.00641 1.18154 0.84829 0.82766 0.80465 1.90771 1.24707 1.84049 1.42063 1.45692 1.28380 1.06259 1.54927 1.21823 0.93534 0.85713 0.99323 1.20727 0.89245 0.91529 0.89747 1.42452 1.02644 1.87408 1.04182 1.18960 0.97437 1.40204 0.80409 0.88953 1.24665 0.97429 1.01633 0.95076 1.69701 1.29961 1.55964 1.02066 0.86576 0.85611 0.78300 0.78055 1.21141 1.21851 1.20540 1.23391 0.97459 0.98942 0.99402 1.22661 1.00345 0.95586 0.98276 1.23234 1.01226 0.97521 0.96750 1.21392 1.00266 0.90310 0.96479 0.91849 0.91622 0.91824 0.88650 0.88560 0.75343 0.85472 0.85013 0.85370 0.76916 0.92381 0.90095 0.80240 0.93031 0.90991 0.90341 0.90335 0.92388 0.91871 0.89902 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -0.83 6.42 -27.88 -0.18 -1.01 16 3 C 0.51 5.21 7.68 -10.98 -0.08 5.12 16 4 O -0.51 -7.80 13.42 5.55 0.07 -7.72 16 5 N -0.68 -5.92 5.33 -9.89 -0.05 -5.97 16 6 C 0.13 1.53 6.29 -83.74 -0.53 1.01 16 7 C -0.13 -1.19 9.96 -39.31 -0.39 -1.58 16 8 C -0.11 -1.08 10.02 -39.67 -0.40 -1.48 16 9 C -0.10 -1.24 9.54 -39.16 -0.37 -1.61 16 10 C -0.11 -1.68 5.87 -104.99 -0.62 -2.30 16 11 C 0.55 10.44 7.77 -12.32 -0.10 10.35 16 12 O -0.54 -12.22 16.34 5.32 0.09 -12.14 16 13 N -0.70 -12.19 5.35 -61.25 -0.33 -12.52 16 14 C 0.12 2.29 5.14 -4.04 -0.02 2.27 16 15 C 0.18 3.25 0.93 -131.01 -0.12 3.13 16 16 N -0.72 -15.97 5.03 -46.48 -0.23 -16.20 16 17 C -0.24 -6.52 9.84 -15.06 -0.15 -6.67 16 18 H 0.09 2.76 7.22 -52.49 -0.38 2.38 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 21 Si 0.88 21.54 27.78 -169.99 -4.72 16.82 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.26 6.45 56.52 0.36 -5.89 16 25 C -0.15 -2.55 7.37 -25.92 -0.19 -2.74 16 26 C -0.13 -1.92 7.99 -25.92 -0.21 -2.13 16 27 C -0.15 -2.14 6.67 -25.92 -0.17 -2.31 16 28 C -0.06 -0.99 8.24 -38.99 -0.32 -1.32 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.41 1.92 8.82 -40.82 -0.36 1.55 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.39 6.40 -52.49 -0.34 1.06 16 38 H 0.40 5.96 6.04 -40.82 -0.25 5.71 16 39 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 40 H 0.08 1.84 6.89 -51.93 -0.36 1.49 16 41 H 0.36 7.87 5.67 -40.82 -0.23 7.64 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 48 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 49 H 0.15 2.78 5.81 -52.48 -0.31 2.48 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -36.68 400.69 -9.24 -45.92 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -7.27 Total: 15.79 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.60 Total: -1.78 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.16 Total: -62.92 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.16 Total: -19.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.68 -9.24 -45.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717152321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.328 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds