Wall clock time and date at job start Wed Apr 1 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46969 * 2 1 4 4 O 1.21287 * 120.00103 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.39954 * 119.99610 * 174.88873 * 5 3 2 7 7 C 1.38988 * 119.99532 * 215.27769 * 6 5 3 8 8 C 1.38215 * 120.22498 * 180.02562 * 7 6 5 9 9 C 1.38025 * 120.21749 * 359.74899 * 8 7 6 10 10 C 1.39577 * 119.99559 * 0.50413 * 9 8 7 11 11 C 1.47859 * 120.10935 * 179.77238 * 10 9 8 12 12 O 1.21555 * 120.00434 * 179.72460 * 11 10 9 13 13 N 1.34782 * 120.00305 * 359.72045 * 11 10 9 14 14 C 1.46496 * 120.00064 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46795 * 175.05145 * 14 13 11 16 16 N 1.46502 * 112.84839 * 286.68455 * 15 14 13 17 17 C 1.36936 * 119.99884 * 304.25104 * 16 15 14 18 18 H 1.07995 * 120.00246 * 4.86686 * 17 16 15 19 19 C 1.38820 * 119.99596 * 184.86418 * 17 16 15 20 20 N 1.31623 * 119.99631 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00213 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46963 * 90.00150 * 21 19 17 23 23 H 1.48504 * 109.47279 * 210.00118 * 21 19 17 24 24 H 1.48501 * 109.47386 * 330.00001 * 21 19 17 25 25 C 1.53782 * 113.61654 * 155.38553 * 15 14 13 26 26 C 1.53779 * 87.08146 * 220.01723 * 25 15 14 27 27 C 1.53774 * 113.61979 * 57.88361 * 15 14 13 28 28 C 1.38591 * 120.00446 * 35.30020 * 6 5 3 29 29 H 1.09002 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46554 * 299.99499 * 1 2 3 31 31 H 1.08997 * 109.47079 * 59.99462 * 1 2 3 32 32 H 1.08998 * 109.47026 * 240.00321 * 2 1 3 33 33 H 1.09000 * 109.47468 * 119.99884 * 2 1 3 34 34 H 0.96997 * 119.99779 * 354.88901 * 5 3 2 35 35 H 1.08000 * 119.89137 * 359.97438 * 7 6 5 36 36 H 1.07994 * 119.89201 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.99971 * 180.25823 * 9 8 7 38 38 H 0.97001 * 119.99460 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47012 * 295.04504 * 14 13 11 40 40 H 1.08996 * 109.47358 * 55.04945 * 14 13 11 41 41 H 0.97004 * 120.00045 * 124.24508 * 16 15 14 42 42 H 0.96994 * 119.99508 * 179.97438 * 20 19 17 43 43 H 1.09004 * 113.61185 * 334.55894 * 25 15 14 44 44 H 1.08998 * 113.61998 * 105.46111 * 25 15 14 45 45 H 1.09010 * 113.61037 * 270.88032 * 26 25 15 46 46 H 1.08996 * 113.61368 * 139.97985 * 26 25 15 47 47 H 1.09001 * 113.61528 * 254.53242 * 27 15 14 48 48 H 1.09001 * 113.61210 * 25.43112 * 27 15 14 49 49 H 1.08004 * 120.11058 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8247 2.9820 -0.1085 7 6 4.9938 3.2484 -0.8112 8 6 5.4599 4.5450 -0.9204 9 6 4.7645 5.5846 -0.3367 10 6 3.5922 5.3268 0.3757 11 6 2.8479 6.4380 1.0063 12 8 1.8245 6.2120 1.6220 13 7 3.3043 7.7016 0.8986 14 6 2.5672 8.8024 1.5239 15 6 3.3562 10.1030 1.3591 16 7 4.5357 10.1664 2.2258 17 6 4.4000 10.0094 3.5793 18 1 3.4371 9.7608 4.0003 19 6 5.5004 10.1696 4.4103 20 7 5.3699 10.0191 5.7114 21 14 7.1662 10.5988 3.6821 22 1 7.3125 12.0752 3.6172 23 1 8.2407 10.0319 4.5362 24 1 7.2697 10.0304 2.3141 25 6 2.4805 11.3659 1.4141 26 6 3.3518 11.9242 0.2765 27 6 3.6485 10.4647 -0.1066 28 6 3.1219 4.0182 0.4856 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9871 0.9332 0.0739 35 1 5.5405 2.4394 -1.2729 36 1 6.3692 4.7458 -1.4674 37 1 5.1296 6.5969 -0.4277 38 1 4.1208 7.8821 0.4070 39 1 1.5932 8.9054 1.0457 40 1 2.4308 8.5921 2.5847 41 1 5.4128 10.3197 1.8407 42 1 6.1389 10.1307 6.2919 43 1 1.4441 11.1916 1.1248 44 1 2.5728 11.9210 2.3476 45 1 4.2280 12.4707 0.6257 46 1 2.7862 12.4679 -0.4800 47 1 4.6838 10.2923 -0.4007 48 1 2.9315 10.0440 -0.8115 49 1 2.2136 3.8132 1.0328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717152321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:51 Heat of formation + Delta-G solvation = -36.547288 kcal Electronic energy + Delta-G solvation = -30000.454186 eV Core-core repulsion = 25927.334075 eV Total energy + Delta-G solvation = -4073.120111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.78910 -41.07145 -40.13699 -39.03267 -35.97730 -35.42684 -35.28588 -33.81991 -32.63750 -32.21844 -30.77038 -28.86383 -26.69853 -25.87610 -25.75254 -24.73771 -23.36308 -22.98964 -21.53368 -21.27898 -20.07731 -19.65076 -19.28643 -18.28836 -17.40886 -17.25327 -17.07801 -16.73129 -16.60257 -16.30502 -15.99378 -15.72387 -15.54651 -15.32211 -14.84180 -14.77107 -14.68849 -14.51498 -14.34677 -14.05501 -13.57860 -13.25957 -13.19616 -13.17731 -13.01123 -12.85238 -12.78541 -12.66150 -12.59574 -12.14271 -12.05961 -11.83409 -11.60642 -11.54800 -11.53817 -11.16518 -10.96344 -10.88864 -10.82161 -10.21001 -9.89872 -9.31984 -9.25594 -8.00363 -5.36019 -0.20988 0.26607 1.35714 1.42828 1.49008 1.49215 1.84723 2.00006 2.19699 2.49278 2.84856 3.28365 3.41456 3.60159 3.70544 3.72696 3.90382 3.93618 3.99772 4.07413 4.15915 4.18549 4.19653 4.24291 4.42359 4.48092 4.58788 4.68279 4.71441 4.82453 4.88794 4.89652 4.95634 4.96902 5.02433 5.11272 5.20485 5.26113 5.27904 5.30852 5.34580 5.37075 5.41281 5.46601 5.60744 5.82892 5.92267 6.23213 6.39475 6.53217 7.09233 7.13977 7.18540 7.81873 8.03188 9.21663 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.002606 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.974882 B =10742.134495 C =11196.910707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.495 3.505 4 O -0.571 6.571 5 N -0.661 5.661 6 C 0.124 3.876 7 C -0.103 4.103 8 C -0.097 4.097 9 C -0.100 4.100 10 C -0.137 4.137 11 C 0.543 3.457 12 O -0.594 6.594 13 N -0.691 5.691 14 C 0.129 3.871 15 C 0.161 3.839 16 N -0.721 5.721 17 C -0.218 4.218 18 H 0.045 0.955 19 C -0.069 4.069 20 N -0.989 5.989 21 Si 0.961 3.039 22 H -0.280 1.280 23 H -0.302 1.302 24 H -0.240 1.240 25 C -0.157 4.157 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.095 4.095 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.433 0.567 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.145 0.855 38 H 0.410 0.590 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.372 0.628 42 H 0.256 0.744 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 -18.985 -23.176 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.286 3.714 4 O -0.449 6.449 5 N -0.309 5.309 6 C 0.030 3.970 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.140 4.140 11 C 0.332 3.668 12 O -0.477 6.477 13 N -0.341 5.341 14 C 0.003 3.997 15 C 0.070 3.930 16 N -0.364 5.364 17 C -0.349 4.349 18 H 0.063 0.937 19 C -0.259 4.259 20 N -0.640 5.640 21 Si 0.788 3.212 22 H -0.206 1.206 23 H -0.230 1.230 24 H -0.164 1.164 25 C -0.197 4.197 26 C -0.156 4.156 27 C -0.165 4.165 28 C -0.116 4.116 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.274 0.726 35 H 0.193 0.807 36 H 0.194 0.806 37 H 0.163 0.837 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.207 0.793 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.126 0.874 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.064 -18.557 -22.551 29.224 hybrid contribution 0.942 0.371 1.049 1.458 sum 2.006 -18.186 -21.502 28.233 Atomic orbital electron populations 1.21582 0.94008 1.02862 1.01586 1.21713 0.97724 0.89912 1.07512 1.22044 0.81570 0.93804 0.74018 1.90789 1.56509 1.48329 1.49235 1.43474 1.08138 1.06621 1.72622 1.17778 0.96066 0.84754 0.98417 1.21554 0.94885 0.99113 0.96773 1.21396 1.00557 0.90949 0.98642 1.21598 0.92654 1.01701 0.95950 1.19784 0.98278 0.92704 1.03270 1.18879 0.84378 0.83906 0.79683 1.90727 1.27352 1.84911 1.44687 1.45566 1.28603 1.05507 1.54407 1.21638 0.94856 0.86852 0.96321 1.21078 0.88406 0.91049 0.92449 1.42286 1.04392 1.87289 1.02471 1.18772 0.95368 1.37784 0.82931 0.93735 1.25576 1.02300 1.02705 0.95361 1.69926 1.31134 1.58737 1.04170 0.85332 0.79043 0.78079 0.78768 1.20633 1.22955 1.16365 1.23436 0.99019 0.97947 0.99306 1.22608 0.99560 0.96052 0.97415 1.23187 1.03205 0.96654 0.93424 1.21209 1.00067 0.91953 0.98386 0.89007 0.94354 0.93647 0.85003 0.85800 0.72612 0.80672 0.80626 0.83714 0.75190 0.91293 0.95612 0.79347 0.93542 0.89181 0.93785 0.91080 0.89239 0.89858 0.87436 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.20 71.98 0.66 -1.36 16 2 C -0.13 -1.26 6.42 29.85 0.19 -1.07 16 3 C 0.50 10.20 7.68 87.66 0.67 10.87 16 4 O -0.57 -19.04 13.42 -3.05 -0.04 -19.08 16 5 N -0.66 -10.43 5.33 -303.59 -1.62 -12.05 16 6 C 0.12 2.77 6.29 38.11 0.24 3.01 16 7 C -0.10 -1.48 9.96 22.44 0.22 -1.26 16 8 C -0.10 -1.46 10.02 22.21 0.22 -1.24 16 9 C -0.10 -2.24 9.54 22.54 0.21 -2.03 16 10 C -0.14 -4.47 5.87 -20.11 -0.12 -4.59 16 11 C 0.54 22.04 7.77 86.79 0.67 22.72 16 12 O -0.59 -30.06 16.34 -3.89 -0.06 -30.12 16 13 N -0.69 -24.59 5.35 -465.96 -2.49 -27.09 16 14 C 0.13 5.13 5.14 86.38 0.44 5.57 16 15 C 0.16 5.77 0.93 4.13 0.00 5.78 16 16 N -0.72 -31.69 5.03 -300.96 -1.51 -33.21 16 17 C -0.22 -12.36 9.84 84.04 0.83 -11.53 16 18 H 0.04 2.91 7.22 -2.91 -0.02 2.89 16 19 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 20 N -0.99 -65.00 13.97 21.65 0.30 -64.70 16 21 Si 0.96 44.59 27.78 68.60 1.91 46.49 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 24 H -0.24 -9.44 6.45 99.48 0.64 -8.80 16 25 C -0.16 -5.23 7.37 31.12 0.23 -5.00 16 26 C -0.12 -3.09 7.99 31.12 0.25 -2.84 16 27 C -0.13 -3.16 6.67 31.12 0.21 -2.95 16 28 C -0.09 -3.14 8.24 22.66 0.19 -2.96 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.43 2.50 8.82 -92.71 -0.82 1.68 16 35 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.15 2.65 6.40 -2.91 -0.02 2.63 16 38 H 0.41 11.82 6.04 -92.71 -0.56 11.26 16 39 H 0.07 2.55 7.90 -2.39 -0.02 2.53 16 40 H 0.03 1.29 6.89 -2.39 -0.02 1.28 16 41 H 0.37 15.15 5.67 -92.71 -0.53 14.62 16 42 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 43 H 0.09 2.65 7.93 -2.38 -0.02 2.63 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 46 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 48 H 0.11 2.24 8.10 -2.39 -0.02 2.22 16 49 H 0.11 4.53 5.81 -2.91 -0.02 4.51 16 Total: -1.00 -93.93 400.69 1.10 -92.83 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -0.97 Total: 39.40 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.60 Total: 7.51 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -5.33 Total: -137.04 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.10 Total: -49.20 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.91 Total: 46.49 kcal Total: -93.93 1.10 -92.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717152321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.280 kcal (2) G-P(sol) polarization free energy of solvation -93.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds