Wall clock time and date at job start Wed Apr 1 2020 04:47:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30994 * 1
3 3 C 1.50701 * 119.99826 * 2 1
4 4 O 1.42903 * 109.46941 * 135.27492 * 3 2 1
5 5 C 1.35651 * 117.00096 * 179.97438 * 4 3 2
6 6 C 1.39346 * 120.53948 * 359.72893 * 5 4 3
7 7 C 1.38301 * 118.43739 * 179.73025 * 6 5 4
8 8 C 1.38769 * 119.44593 * 0.56336 * 7 6 5
9 9 N 1.31384 * 121.06374 * 359.69553 * 8 7 6
10 10 C 1.32852 * 121.69790 * 0.02562 * 9 8 7
11 11 C 1.47826 * 119.78462 * 179.97438 * 10 9 8
12 12 O 1.21553 * 120.00384 * 180.02562 * 11 10 9
13 13 N 1.34777 * 119.99630 * 0.02562 * 11 10 9
14 14 C 1.46499 * 119.99715 * 179.97438 * 13 11 10
15 15 H 1.09002 * 110.43873 * 325.70546 * 14 13 11
16 16 C 1.54890 * 110.48872 * 88.24525 * 14 13 11
17 17 C 1.55022 * 102.68823 * 156.51649 * 16 14 13
18 18 C 1.54270 * 104.28120 * 322.23496 * 17 16 14
19 19 H 1.09004 * 110.07131 * 264.21402 * 18 17 16
20 20 C 1.52998 * 110.03390 * 142.80148 * 18 17 16
21 21 N 1.46504 * 109.46970 * 67.83474 * 20 18 17
22 22 C 1.36938 * 119.99387 * 179.97438 * 21 20 18
23 23 H 1.07997 * 120.00634 * 0.02562 * 22 21 20
24 24 C 1.38822 * 119.99200 * 179.97438 * 22 21 20
25 25 N 1.31624 * 119.99395 * 179.97438 * 24 22 21
26 26 Si 1.86792 * 120.00196 * 0.02562 * 24 22 21
27 27 H 1.48501 * 109.47090 * 90.00171 * 26 24 22
28 28 H 1.48504 * 109.46974 * 209.99870 * 26 24 22
29 29 H 1.48498 * 109.47283 * 329.99993 * 26 24 22
30 30 C 1.53878 * 106.59929 * 23.51510 * 18 17 16
31 31 H 1.07998 * 120.00195 * 179.72135 * 1 2 3
32 32 H 1.08002 * 120.00350 * 359.72370 * 1 2 3
33 33 H 1.08002 * 120.00352 * 180.28242 * 2 1 3
34 34 H 1.09002 * 109.47668 * 255.27790 * 3 2 1
35 35 H 1.08998 * 109.47208 * 15.27782 * 3 2 1
36 36 H 1.07995 * 120.77859 * 359.97438 * 6 5 4
37 37 H 1.07995 * 120.27782 * 180.26414 * 7 6 5
38 38 H 1.08002 * 119.46590 * 179.67861 * 8 7 6
39 39 H 0.97000 * 120.00395 * 0.02562 * 13 11 10
40 40 H 1.09005 * 110.75579 * 274.93752 * 16 14 13
41 41 H 1.09002 * 110.75207 * 38.30464 * 16 14 13
42 42 H 1.09000 * 110.52692 * 203.49469 * 17 16 14
43 43 H 1.08995 * 110.48416 * 80.95327 * 17 16 14
44 44 H 1.09001 * 109.46950 * 187.83314 * 20 18 17
45 45 H 1.08998 * 109.47256 * 307.83208 * 20 18 17
46 46 H 0.96995 * 119.99932 * 0.02562 * 21 20 18
47 47 H 0.96994 * 119.99808 * 179.97438 * 25 24 22
48 48 H 1.08995 * 110.03349 * 240.72059 * 30 18 17
49 49 H 1.08998 * 110.03020 * 119.28480 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 8 3.1306 1.2390 0.9481
5 6 3.9127 2.3403 1.0729
6 6 3.6711 3.4720 0.2965
7 6 4.4919 4.5725 0.4632
8 6 5.5307 4.5160 1.3815
9 7 5.7431 3.4361 2.0991
10 6 4.9786 2.3563 1.9786
11 6 5.2561 1.1639 2.8070
12 8 4.5594 0.1736 2.6997
13 7 6.2817 1.1747 3.6814
14 6 6.5565 -0.0068 4.5028
15 1 5.6271 -0.5119 4.7661
16 6 7.5076 -0.9759 3.7576
17 6 8.1515 -1.7794 4.9165
18 6 8.3491 -0.7382 6.0376
19 1 9.3641 -0.3421 6.0056
20 6 8.0794 -1.3783 7.4009
21 7 9.1215 -2.3662 7.6912
22 6 9.0887 -3.0710 8.8648
23 1 8.2946 -2.8989 9.5762
24 6 10.0759 -4.0076 9.1397
25 7 10.0447 -4.6846 10.2680
26 14 11.4490 -4.3058 7.9090
27 1 12.5827 -3.3921 8.2011
28 1 11.9090 -5.7140 8.0122
29 1 10.9472 -4.0484 6.5353
30 6 7.3350 0.3889 5.7746
31 1 -0.5400 -0.9353 -0.0045
32 1 -0.5401 0.9353 0.0045
33 1 1.8500 -0.9353 -0.0046
34 1 2.4713 1.4893 -0.9939
35 1 1.3865 2.1154 0.2708
36 1 2.8595 3.4906 -0.4157
37 1 4.3287 5.4668 -0.1199
38 1 6.1751 5.3734 1.5082
39 1 6.8375 1.9650 3.7673
40 1 6.9465 -1.6337 3.0938
41 1 8.2665 -0.4228 3.2041
42 1 9.1111 -2.1938 4.6074
43 1 7.4827 -2.5739 5.2475
44 1 8.0846 -0.6075 8.1715
45 1 7.1067 -1.8699 7.3854
46 1 9.8349 -2.5206 7.0525
47 1 10.7342 -5.3393 10.4599
48 1 7.8579 1.3316 5.6140
49 1 6.6507 0.4798 6.6181
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734478124.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:33
Heat of formation + Delta-G solvation = -29.756423 kcal
Electronic energy + Delta-G solvation = -29238.488254 eV
Core-core repulsion = 25165.662618 eV
Total energy + Delta-G solvation = -4072.825637 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-42.00013 -40.60900 -39.41566 -39.07221 -36.57449 -35.14591 -34.79718 -33.54176
-33.02545 -31.62772 -30.37235 -29.11263 -27.72552 -26.41865 -25.36812 -23.89081
-23.69186 -22.29968 -21.47687 -21.03897 -20.87082 -19.59008 -19.37216 -18.78112
-18.13981 -17.35178 -17.15414 -16.58403 -16.49785 -16.19728 -16.08498 -15.78446
-15.49447 -15.21299 -14.99134 -14.85034 -14.60563 -14.59359 -14.25442 -14.04384
-13.88863 -13.72585 -13.50264 -13.06255 -12.90639 -12.84548 -12.57980 -12.41145
-12.15576 -12.01371 -12.00372 -11.82806 -11.77315 -11.65506 -11.38505 -11.25493
-10.94852 -10.84916 -10.71165 -10.43976 -10.06079 -9.49698 -9.28188 -8.02510
-5.35588 -0.37231 0.20791 1.07134 1.37721 1.41757 1.49195 1.75834
2.07621 2.24471 2.48986 2.81943 3.19252 3.28430 3.51024 3.54445
3.58353 3.67792 3.84817 3.89329 3.91847 4.01860 4.04360 4.13915
4.27035 4.37161 4.45982 4.46610 4.47533 4.50889 4.60261 4.64455
4.71633 4.86955 4.90212 4.91772 5.01104 5.04651 5.05367 5.11315
5.23312 5.34795 5.40625 5.50918 5.57386 5.58004 5.63396 5.76062
6.19586 6.21789 6.47099 6.81400 7.08649 7.23901 7.85208 8.05672
9.19241
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016709 B = 0.001959 C = 0.001825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.332692 B =14286.879322 C =15341.717541
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.181 4.181
3 C 0.075 3.925
4 O -0.301 6.301
5 C 0.122 3.878
6 C -0.174 4.174
7 C -0.086 4.086
8 C 0.054 3.946
9 N -0.436 5.436
10 C 0.005 3.995
11 C 0.563 3.437
12 O -0.558 6.558
13 N -0.695 5.695
14 C 0.144 3.856
15 H 0.072 0.928
16 C -0.121 4.121
17 C -0.114 4.114
18 C -0.089 4.089
19 H 0.086 0.914
20 C 0.159 3.841
21 N -0.756 5.756
22 C -0.235 4.235
23 H 0.054 0.946
24 C -0.068 4.068
25 N -0.985 5.985
26 Si 0.958 3.042
27 H -0.275 1.275
28 H -0.296 1.296
29 H -0.250 1.250
30 C -0.109 4.109
31 H 0.115 0.885
32 H 0.118 0.882
33 H 0.103 0.897
34 H 0.091 0.909
35 H 0.089 0.911
36 H 0.175 0.825
37 H 0.188 0.812
38 H 0.199 0.801
39 H 0.417 0.583
40 H 0.056 0.944
41 H 0.082 0.918
42 H 0.067 0.933
43 H 0.054 0.946
44 H 0.026 0.974
45 H 0.018 0.982
46 H 0.367 0.633
47 H 0.258 0.742
48 H 0.096 0.904
49 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.032 25.698 -30.494 42.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.199 4.199
3 C 0.001 3.999
4 O -0.213 6.213
5 C 0.071 3.929
6 C -0.200 4.200
7 C -0.106 4.106
8 C -0.108 4.108
9 N -0.148 5.148
10 C -0.131 4.131
11 C 0.350 3.650
12 O -0.436 6.436
13 N -0.347 5.347
14 C 0.039 3.961
15 H 0.091 0.909
16 C -0.160 4.160
17 C -0.152 4.152
18 C -0.108 4.108
19 H 0.104 0.896
20 C 0.033 3.967
21 N -0.402 5.402
22 C -0.366 4.366
23 H 0.072 0.928
24 C -0.259 4.259
25 N -0.636 5.636
26 Si 0.784 3.216
27 H -0.201 1.201
28 H -0.223 1.223
29 H -0.175 1.175
30 C -0.147 4.147
31 H 0.134 0.866
32 H 0.136 0.864
33 H 0.121 0.879
34 H 0.109 0.891
35 H 0.107 0.893
36 H 0.193 0.807
37 H 0.205 0.795
38 H 0.215 0.785
39 H 0.255 0.745
40 H 0.075 0.925
41 H 0.100 0.900
42 H 0.086 0.914
43 H 0.073 0.927
44 H 0.044 0.956
45 H 0.036 0.964
46 H 0.200 0.800
47 H 0.066 0.934
48 H 0.115 0.885
49 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -15.963 24.658 -29.638 41.728
hybrid contribution 0.294 -0.607 -0.577 0.887
sum -15.669 24.051 -30.215 41.676
Atomic orbital electron populations
1.24097 0.94730 1.03868 0.96573 1.22655 0.96377 0.97545 1.03364
1.22221 0.87484 0.97769 0.92447 1.86415 1.41649 1.34508 1.58683
1.20278 0.90553 0.87936 0.94115 1.22167 1.03905 0.92323 1.01624
1.22741 0.92329 0.99232 0.96280 1.23429 0.98158 0.95992 0.93215
1.67559 1.25077 0.99257 1.22922 1.20431 0.96572 0.95124 1.01004
1.18096 0.80537 0.86373 0.80026 1.90815 1.49882 1.34716 1.68176
1.45799 1.31772 1.17888 1.39224 1.21776 0.98167 0.85763 0.90413
0.90932 1.22796 0.98292 0.97650 0.97246 1.22334 1.00768 0.97469
0.94612 1.21833 1.00267 0.95328 0.93412 0.89603 1.20960 0.90596
0.90257 0.94856 1.42699 1.30490 1.46873 1.20147 1.19063 1.07884
1.14343 0.95350 0.92844 1.25568 1.01994 0.98973 0.99367 1.69898
1.37390 1.29780 1.26519 0.85364 0.79448 0.76837 0.79913 1.20102
1.22276 1.17490 1.22286 0.97405 0.98786 0.96237 0.86642 0.86375
0.87889 0.89071 0.89277 0.80722 0.79459 0.78463 0.74510 0.92487
0.89956 0.91415 0.92732 0.95552 0.96393 0.79979 0.93350 0.88512
0.90650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.64 14.31 67.79 0.97 -0.67 16
2 C -0.18 -2.73 9.89 25.65 0.25 -2.48 16
3 C 0.07 1.00 5.17 71.24 0.37 1.36 16
4 O -0.30 -6.98 8.18 -68.68 -0.56 -7.54 16
5 C 0.12 2.42 6.71 22.94 0.15 2.58 16
6 C -0.17 -1.73 9.13 22.55 0.21 -1.52 16
7 C -0.09 -0.49 10.10 22.41 0.23 -0.27 16
8 C 0.05 0.52 11.17 84.89 0.95 1.47 16
9 N -0.44 -7.77 9.54 -184.63 -1.76 -9.53 16
10 C 0.01 0.12 6.76 41.93 0.28 0.40 16
11 C 0.56 16.16 7.80 86.78 0.68 16.83 16
12 O -0.56 -20.17 14.82 17.10 0.25 -19.92 16
13 N -0.70 -16.75 5.16 -440.32 -2.27 -19.02 16
14 C 0.14 3.76 3.18 46.07 0.15 3.91 16
15 H 0.07 2.26 7.61 -2.39 -0.02 2.24 16
16 C -0.12 -3.20 6.59 31.93 0.21 -2.99 16
17 C -0.11 -3.39 6.09 31.72 0.19 -3.20 16
18 C -0.09 -2.63 2.96 -10.07 -0.03 -2.66 16
19 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16
20 C 0.16 6.27 5.31 86.38 0.46 6.73 16
21 N -0.76 -36.62 5.25 -343.44 -1.80 -38.43 16
22 C -0.24 -13.99 10.47 84.04 0.88 -13.11 16
23 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16
24 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16
25 N -0.99 -64.97 13.97 21.66 0.30 -64.67 16
26 Si 0.96 46.67 27.74 68.60 1.90 48.58 16
27 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16
29 H -0.25 -11.01 6.52 99.48 0.65 -10.36 16
30 C -0.11 -2.60 6.19 31.32 0.19 -2.40 16
31 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16
32 H 0.12 0.75 7.90 -2.91 -0.02 0.73 16
33 H 0.10 1.90 8.06 -2.91 -0.02 1.88 16
34 H 0.09 0.79 7.68 -2.39 -0.02 0.77 16
35 H 0.09 0.74 7.43 -2.39 -0.02 0.73 16
36 H 0.18 0.57 6.46 -2.91 -0.02 0.55 16
37 H 0.19 -0.57 8.06 -2.91 -0.02 -0.59 16
38 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16
39 H 0.42 8.21 7.67 -92.71 -0.71 7.49 16
40 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16
41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
43 H 0.05 1.85 7.76 -2.39 -0.02 1.83 16
44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
45 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16
46 H 0.37 16.78 5.41 -92.71 -0.50 16.27 16
47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16
48 H 0.10 1.82 7.72 -2.39 -0.02 1.80 16
49 H 0.07 1.85 7.67 -2.39 -0.02 1.83 16
Total: -1.00 -83.59 403.36 2.36 -81.23
By element:
Atomic # 1 Polarization: 29.29 SS G_CDS: -0.31 Total: 28.98 kcal
Atomic # 6 Polarization: -6.29 SS G_CDS: 6.61 Total: 0.32 kcal
Atomic # 7 Polarization: -126.12 SS G_CDS: -5.53 Total: -131.65 kcal
Atomic # 8 Polarization: -27.15 SS G_CDS: -0.31 Total: -27.45 kcal
Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.58 kcal
Total: -83.59 2.36 -81.23 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734478124.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.475 kcal
(2) G-P(sol) polarization free energy of solvation -83.593 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.231 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.756 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds