Wall clock time and date at job start Wed Apr 1 2020 04:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46799 * 2 1 4 4 O 1.21289 * 119.99931 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99970 * 179.97438 * 3 2 1 6 6 C 1.39950 * 119.99790 * 185.27415 * 5 3 2 7 7 C 1.38992 * 119.99790 * 213.32848 * 6 5 3 8 8 C 1.38211 * 120.22567 * 179.97438 * 7 6 5 9 9 C 1.38029 * 120.22141 * 359.76187 * 8 7 6 10 10 C 1.39578 * 119.99046 * 0.53352 * 9 8 7 11 11 C 1.47862 * 120.10903 * 179.71863 * 10 9 8 12 12 O 1.21550 * 120.00021 * 179.73082 * 11 10 9 13 13 N 1.34778 * 119.99802 * 359.72788 * 11 10 9 14 14 C 1.46502 * 119.99807 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47448 * 35.00166 * 14 13 11 16 16 C 1.52998 * 109.47166 * 155.00359 * 14 13 11 17 17 N 1.46500 * 109.47195 * 304.99833 * 16 14 13 18 18 C 1.36935 * 120.00590 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99737 * 359.73128 * 18 17 16 20 20 C 1.38816 * 120.00505 * 179.72487 * 18 17 16 21 21 N 1.31616 * 119.99593 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47461 * 59.99870 * 22 20 18 24 24 H 1.48502 * 109.46842 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47206 * 299.99469 * 22 20 18 26 26 C 1.52998 * 109.47027 * 274.99889 * 14 13 11 27 27 C 1.53007 * 117.49845 * 128.74988 * 26 14 13 28 28 C 1.53007 * 117.49860 * 60.08833 * 26 14 13 29 29 C 1.38597 * 120.00466 * 33.35474 * 6 5 3 30 30 H 1.08998 * 109.47586 * 299.99959 * 1 2 3 31 31 H 1.09002 * 109.47530 * 60.00174 * 1 2 3 32 32 H 1.09007 * 109.46740 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47135 * 239.99871 * 2 1 3 34 34 H 1.08997 * 109.47050 * 119.99294 * 2 1 3 35 35 H 0.97003 * 119.99386 * 5.27341 * 5 3 2 36 36 H 1.08004 * 119.89040 * 0.02562 * 7 6 5 37 37 H 1.08000 * 119.89030 * 180.02562 * 8 7 6 38 38 H 1.07995 * 120.00415 * 180.28140 * 9 8 7 39 39 H 0.97000 * 120.00416 * 0.02562 * 13 11 10 40 40 H 1.08998 * 109.47265 * 184.99871 * 16 14 13 41 41 H 1.09005 * 109.47467 * 64.99580 * 16 14 13 42 42 H 0.97008 * 119.99765 * 359.72865 * 17 16 14 43 43 H 0.97001 * 119.99530 * 180.02562 * 21 20 18 44 44 H 1.09003 * 115.55425 * 274.41787 * 26 14 13 45 45 H 1.09000 * 117.49263 * 359.97438 * 27 26 14 46 46 H 1.08992 * 117.49879 * 145.02203 * 27 26 14 47 47 H 1.08998 * 117.49757 * 214.97813 * 28 26 14 48 48 H 1.09004 * 117.49458 * 359.97438 * 28 26 14 49 49 H 1.08004 * 120.10601 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8246 2.9817 0.1119 7 6 4.9937 3.3610 -0.5371 8 6 5.4592 4.6580 -0.4307 9 6 4.7635 5.5867 0.3168 10 6 3.5918 5.2141 0.9774 11 6 2.8478 6.2053 1.7840 12 8 1.8250 5.8799 2.3545 13 7 3.3039 7.4694 1.8866 14 6 2.5665 8.4515 2.6853 15 1 2.1234 7.9577 3.5500 16 6 3.5245 9.5465 3.1588 17 7 4.6478 8.9366 3.8745 18 6 5.6392 9.7262 4.3930 19 1 5.5952 10.7983 4.2705 20 6 6.7007 9.1486 5.0762 21 7 6.7545 7.8421 5.2251 22 14 8.0526 10.2259 5.7840 23 1 7.4672 11.1738 6.7658 24 1 9.0617 9.3726 6.4614 25 1 8.7034 10.9877 4.6879 26 6 1.4604 9.0756 1.8321 27 6 0.0439 9.0878 2.4104 28 6 0.3941 8.1382 1.2619 29 6 3.1220 3.9051 0.8699 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.9871 0.9334 -0.0763 36 1 5.5399 2.6400 -1.1273 37 1 6.3680 4.9469 -0.9377 38 1 5.1280 6.6004 0.3938 39 1 4.1199 7.7291 1.4311 40 1 2.9962 10.2282 3.8252 41 1 3.8996 10.0987 2.2970 42 1 4.6875 7.9736 3.9843 43 1 7.4960 7.4385 5.7028 44 1 1.7617 9.9263 1.2206 45 1 -0.0999 8.6507 3.3985 46 1 -0.5867 9.9461 2.1791 47 1 -0.0064 8.3723 0.2755 48 1 0.4809 7.0767 1.4943 49 1 2.2138 3.6121 1.3756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754442795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:34 Heat of formation + Delta-G solvation = -8.302982 kcal Electronic energy + Delta-G solvation = -30085.270266 eV Core-core repulsion = 26013.374920 eV Total energy + Delta-G solvation = -4071.895346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.80966 -39.82917 -38.36648 -36.93275 -35.04066 -34.89068 -33.40098 -33.13152 -31.40835 -30.82098 -29.68636 -27.90923 -25.09829 -24.34224 -23.63364 -22.45482 -22.04797 -21.46138 -20.59810 -20.43170 -19.92269 -18.26318 -17.47279 -17.09924 -16.45234 -16.13202 -15.95689 -15.78182 -15.20468 -14.94730 -14.70320 -14.36588 -14.30642 -13.83455 -13.68781 -13.63338 -13.39810 -13.11537 -12.87249 -12.69216 -12.53663 -12.09378 -12.06414 -11.94813 -11.63405 -11.58050 -11.49044 -11.14436 -10.98077 -10.88257 -10.78829 -10.57283 -10.19602 -10.04611 -10.01749 -9.89533 -9.67049 -9.49471 -8.95835 -8.90349 -8.54825 -8.26351 -6.95471 -5.76996 -3.06996 0.87383 1.28616 2.34496 2.75756 3.10643 3.42206 3.44099 3.47911 3.48738 3.97330 4.21295 4.33899 4.56625 4.67839 4.72938 4.79154 4.84661 4.95807 5.11205 5.13162 5.17239 5.25500 5.34328 5.41898 5.42740 5.46822 5.52391 5.57096 5.60584 5.81956 5.86689 5.92644 5.93474 5.96789 6.13948 6.15442 6.22172 6.27819 6.34602 6.40009 6.44012 6.53199 6.62392 6.71761 6.87665 7.00666 7.10883 7.68286 7.87360 7.93114 8.40554 8.59719 9.52257 10.08236 10.43969 11.45107 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.002888 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.910686 B = 9692.378965 C =11395.730853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.511 6.511 5 N -0.676 5.676 6 C 0.131 3.869 7 C -0.125 4.125 8 C -0.106 4.106 9 C -0.094 4.094 10 C -0.107 4.107 11 C 0.561 3.439 12 O -0.538 6.538 13 N -0.701 5.701 14 C 0.169 3.831 15 H 0.089 0.911 16 C 0.148 3.852 17 N -0.732 5.732 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.163 4.163 27 C -0.171 4.171 28 C -0.185 4.185 29 C -0.063 4.063 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.411 0.589 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.403 0.597 40 H 0.036 0.964 41 H 0.025 0.975 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.118 0.882 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -14.404 -15.472 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.385 6.385 5 N -0.322 5.322 6 C 0.037 3.963 7 C -0.146 4.146 8 C -0.125 4.125 9 C -0.113 4.113 10 C -0.111 4.111 11 C 0.348 3.652 12 O -0.418 6.418 13 N -0.351 5.351 14 C 0.064 3.936 15 H 0.107 0.893 16 C 0.020 3.980 17 N -0.377 5.377 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.183 4.183 27 C -0.208 4.208 28 C -0.221 4.221 29 C -0.084 4.084 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.246 0.754 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.239 0.761 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.136 0.864 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.721 -13.862 -14.980 22.195 hybrid contribution 1.735 0.079 0.194 1.747 sum -6.986 -13.784 -14.786 21.388 Atomic orbital electron populations 1.21557 0.92635 1.01798 1.03732 1.21639 0.99033 0.92889 1.04573 1.21061 0.81604 0.92470 0.75544 1.90792 1.54874 1.46266 1.46523 1.43560 1.07953 1.07047 1.73603 1.17572 0.95585 0.85041 0.98098 1.21009 0.96675 0.97130 0.99781 1.20880 0.99944 0.92415 0.99255 1.21402 0.93725 1.00282 0.95900 1.19872 0.96516 0.94413 1.00249 1.18116 0.84421 0.82143 0.80497 1.90682 1.24612 1.79347 1.47117 1.45857 1.28252 1.09516 1.51451 1.20817 0.91184 0.89154 0.92413 0.89339 1.20923 0.88786 0.93084 0.95212 1.42356 1.22585 1.06911 1.65811 1.19166 0.99530 0.90560 1.28110 0.91183 1.24749 0.99029 0.95727 1.01297 1.69665 1.32832 1.08472 1.46873 0.86267 0.81743 0.79256 0.78881 1.21282 1.21734 1.21280 1.22649 0.90273 1.01891 1.03497 1.22894 0.97289 1.01862 0.98805 1.23276 1.02441 0.99292 0.97138 1.21185 1.00108 0.91516 0.95596 0.91644 0.91859 0.91877 0.88732 0.88481 0.75373 0.85510 0.84941 0.85069 0.76094 0.94635 0.95711 0.77965 0.93457 0.87899 0.88761 0.89250 0.89915 0.86423 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.68 16 2 C -0.14 -0.87 6.42 -27.88 -0.18 -1.05 16 3 C 0.51 5.33 7.57 -10.98 -0.08 5.24 16 4 O -0.51 -7.82 13.67 5.55 0.08 -7.74 16 5 N -0.68 -6.19 5.34 -9.89 -0.05 -6.24 16 6 C 0.13 1.61 6.27 -83.74 -0.53 1.08 16 7 C -0.13 -1.30 9.95 -39.31 -0.39 -1.69 16 8 C -0.11 -1.19 10.02 -39.67 -0.40 -1.58 16 9 C -0.09 -1.27 9.54 -39.16 -0.37 -1.64 16 10 C -0.11 -1.72 5.87 -104.99 -0.62 -2.34 16 11 C 0.56 10.24 7.11 -12.32 -0.09 10.15 16 12 O -0.54 -11.21 13.37 5.32 0.07 -11.13 16 13 N -0.70 -12.05 4.45 -54.75 -0.24 -12.29 16 14 C 0.17 3.00 2.43 -67.93 -0.17 2.84 16 15 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 16 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 17 N -0.73 -18.26 5.43 -59.91 -0.33 -18.59 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.16 -2.49 5.36 -90.61 -0.49 -2.97 16 27 C -0.17 -2.44 10.18 -26.68 -0.27 -2.71 16 28 C -0.18 -2.83 9.74 -26.68 -0.26 -3.08 16 29 C -0.06 -0.99 8.20 -38.98 -0.32 -1.31 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 2.11 8.82 -40.82 -0.36 1.75 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 1.65 6.40 -52.49 -0.34 1.31 16 39 H 0.40 6.50 6.63 -40.82 -0.27 6.23 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.39 10.34 7.34 -40.82 -0.30 10.04 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16 45 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.12 2.12 5.02 -51.93 -0.26 1.86 16 49 H 0.15 2.62 6.01 -52.48 -0.32 2.31 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -35.30 404.50 -10.02 -45.31 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -7.25 Total: 18.71 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -4.08 Total: -4.09 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.10 Total: -64.37 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.15 Total: -18.87 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.30 -10.02 -45.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754442795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.010 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds