Wall clock time and date at job start Wed Apr 1 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46992 * 2 1 4 4 O 1.21281 * 120.00060 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99814 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99781 * 180.27710 * 5 3 2 7 7 C 1.50709 * 109.47130 * 179.72631 * 6 5 3 8 8 O 1.21274 * 119.99598 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99870 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99604 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46952 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.76574 * 294.24923 * 11 10 9 13 13 C 1.52791 * 109.77534 * 173.44308 * 11 10 9 14 14 C 1.50597 * 110.83779 * 192.85440 * 13 11 10 15 15 C 1.38984 * 117.61402 * 199.56184 * 14 13 11 16 16 C 1.37906 * 120.57923 * 181.14140 * 15 14 13 17 17 C 1.38264 * 119.82592 * 359.95444 * 16 15 14 18 18 C 1.37958 * 119.71848 * 359.75364 * 17 16 15 19 19 C 1.37675 * 122.86239 * 20.22655 * 14 13 11 20 20 C 1.50810 * 122.34166 * 358.56611 * 19 14 13 21 21 N 1.46683 * 109.68760 * 11.45471 * 20 19 14 22 22 C 1.36940 * 121.32636 * 135.69852 * 21 20 19 23 23 H 1.08000 * 119.99574 * 144.29639 * 22 21 20 24 24 C 1.38809 * 120.00376 * 324.29403 * 22 21 20 25 25 N 1.31617 * 120.00222 * 158.39227 * 24 22 21 26 26 Si 1.86807 * 119.99632 * 338.39009 * 24 22 21 27 27 H 1.48509 * 109.46912 * 95.35633 * 26 24 22 28 28 H 1.48502 * 109.47148 * 215.35121 * 26 24 22 29 29 H 1.48497 * 109.47211 * 335.35581 * 26 24 22 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47144 * 299.99714 * 1 2 3 32 32 H 1.08997 * 109.47528 * 59.99762 * 1 2 3 33 33 H 1.09003 * 109.47144 * 240.00286 * 2 1 3 34 34 H 1.08997 * 109.47528 * 120.00238 * 2 1 3 35 35 H 0.96996 * 119.99948 * 0.02562 * 5 3 2 36 36 H 1.09004 * 109.47134 * 299.72453 * 6 5 3 37 37 H 1.09000 * 109.47344 * 59.72597 * 6 5 3 38 38 H 0.96997 * 119.99926 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.46948 * 299.99554 * 10 9 7 40 40 H 1.08998 * 109.46941 * 60.00279 * 10 9 7 41 41 H 1.08996 * 109.20151 * 313.20066 * 13 11 10 42 42 H 1.09001 * 109.20430 * 72.50153 * 13 11 10 43 43 H 1.07994 * 119.70361 * 1.11939 * 15 14 13 44 44 H 1.07996 * 120.08588 * 179.97438 * 16 15 14 45 45 H 1.08004 * 120.13771 * 179.76346 * 17 16 15 46 46 H 1.08007 * 119.74190 * 180.02562 * 18 17 16 47 47 H 1.08992 * 109.43764 * 251.38828 * 20 19 14 48 48 H 1.09004 * 109.40067 * 131.49688 * 20 19 14 49 49 H 0.97002 * 119.99907 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0056 7 6 5.3528 3.0483 0.0104 8 8 5.9591 1.9981 0.0084 9 7 6.0266 4.2156 0.0170 10 6 7.4916 4.2155 0.0211 11 6 8.0016 5.6581 0.0276 12 1 7.7298 6.1494 -0.9068 13 6 9.5201 5.6687 0.1961 14 6 10.0137 7.0546 0.5180 15 6 11.3582 7.3274 0.2957 16 6 11.8803 8.5692 0.5912 17 6 11.0610 9.5534 1.1125 18 6 9.7246 9.2872 1.3285 19 6 9.1971 8.0387 1.0283 20 6 7.7265 7.8174 1.2785 21 7 7.4152 6.3886 1.1634 22 6 6.6108 5.7595 2.0758 23 1 5.9387 4.9775 1.7545 24 6 6.6592 6.1267 3.4136 25 7 5.6420 5.8624 4.2058 26 14 8.1683 6.9961 4.0893 27 1 7.9446 8.4641 4.0687 28 1 8.4116 6.5521 5.4854 29 1 9.3481 6.6633 3.2512 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9877 0.9299 -0.0013 36 1 3.4852 3.5651 -0.8839 37 1 3.4795 3.5592 0.8961 38 1 5.5415 5.0555 0.0182 39 1 7.8523 3.6982 0.9100 40 1 7.8573 3.7053 -0.8699 41 1 9.7957 4.9930 1.0057 42 1 9.9859 5.3280 -0.7286 43 1 11.9997 6.5601 -0.1117 44 1 12.9264 8.7724 0.4157 45 1 11.4654 10.5264 1.3493 46 1 9.0841 10.0559 1.7353 47 1 7.1457 8.3754 0.5442 48 1 7.4735 8.1641 2.2804 49 1 5.6757 6.1194 5.1406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755073776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:03 Heat of formation + Delta-G solvation = -16.730448 kcal Electronic energy + Delta-G solvation = -30492.755501 eV Core-core repulsion = 26420.494713 eV Total energy + Delta-G solvation = -4072.260788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.05901 -39.64090 -38.89416 -36.84351 -34.39616 -33.93889 -32.99196 -32.82302 -31.83517 -30.63511 -29.62168 -28.06942 -25.75875 -25.29777 -23.77770 -23.15460 -21.78863 -21.21551 -20.30664 -20.18165 -19.06083 -17.79519 -16.85932 -16.51580 -16.12901 -15.95236 -15.71704 -15.45819 -15.26298 -14.99492 -14.75489 -14.52456 -14.35872 -13.78289 -13.56415 -13.37796 -13.01508 -12.93386 -12.74943 -12.64724 -12.54511 -12.36913 -12.27746 -12.04401 -11.82372 -11.65221 -11.49733 -11.25715 -11.23734 -11.14983 -10.71226 -10.43941 -10.34046 -10.10157 -9.84731 -9.67279 -9.56975 -9.04244 -8.70262 -8.47817 -8.37144 -8.12301 -7.03318 -6.08091 -3.53383 1.66711 1.70649 2.69979 2.93367 3.05874 3.25571 3.44252 3.53595 3.77483 4.06181 4.44621 4.68601 4.73324 4.97337 5.01165 5.03306 5.09310 5.14271 5.17302 5.26497 5.29343 5.43820 5.52255 5.55392 5.64267 5.67215 5.72569 5.74288 5.82552 5.84723 5.89901 5.95058 6.10802 6.12399 6.22718 6.28951 6.33030 6.39865 6.42186 6.48381 6.67990 6.75742 6.78023 6.88139 7.07862 7.33788 7.58109 7.83945 7.90832 8.22332 8.29668 8.55105 8.77854 9.56712 9.97319 11.03952 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.002700 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.326732 B =10369.777571 C =11300.420108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.511 3.489 4 O -0.544 6.544 5 N -0.717 5.717 6 C 0.098 3.902 7 C 0.508 3.492 8 O -0.559 6.559 9 N -0.693 5.693 10 C 0.137 3.863 11 C 0.158 3.842 12 H 0.051 0.949 13 C -0.096 4.096 14 C -0.057 4.057 15 C -0.127 4.127 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.082 4.082 20 C 0.168 3.832 21 N -0.601 5.601 22 C -0.289 4.289 23 H 0.110 0.890 24 C 0.041 3.959 25 N -0.895 5.895 26 Si 0.863 3.137 27 H -0.288 1.288 28 H -0.304 1.304 29 H -0.257 1.257 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.416 0.584 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.046 0.954 48 H 0.078 0.922 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -3.440 -10.596 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.297 3.703 4 O -0.421 6.421 5 N -0.372 5.372 6 C -0.029 4.029 7 C 0.293 3.707 8 O -0.439 6.439 9 N -0.344 5.344 10 C 0.014 3.986 11 C 0.051 3.949 12 H 0.069 0.931 13 C -0.135 4.135 14 C -0.057 4.057 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.083 4.083 20 C 0.043 3.957 21 N -0.325 5.325 22 C -0.416 4.416 23 H 0.127 0.873 24 C -0.161 4.161 25 N -0.535 5.535 26 Si 0.693 3.307 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.181 1.181 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.254 0.746 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.964 -3.525 -10.421 11.175 hybrid contribution 1.350 0.831 0.919 1.832 sum 3.314 -2.693 -9.502 10.418 Atomic orbital electron populations 1.21527 0.93052 1.01409 1.03423 1.21609 0.98537 0.93675 1.04456 1.20766 0.81717 0.91996 0.75813 1.90712 1.55319 1.46518 1.49532 1.45746 1.07506 1.08509 1.75397 1.21078 0.91686 0.85083 1.05034 1.20320 0.89446 0.84328 0.76578 1.90631 1.70001 1.31451 1.51774 1.46006 1.07829 1.08642 1.71947 1.21297 0.79263 0.96487 1.01588 1.20888 0.90626 0.91268 0.92086 0.93136 1.20944 0.97906 0.93448 1.01210 1.19464 0.92935 0.95365 0.97919 1.21149 0.94891 0.96933 1.01510 1.20914 0.99215 0.93897 1.01003 1.20952 0.93961 0.99051 1.00775 1.21111 0.95564 0.96763 1.00938 1.20424 0.97920 0.92979 0.96976 1.20111 0.88302 0.86659 1.00644 1.44439 1.56585 1.02941 1.28584 1.19364 1.14694 1.20993 0.86574 0.87292 1.25494 0.96487 0.97947 0.96124 1.69821 1.28898 1.48521 1.06267 0.87164 0.86855 0.78633 0.78041 1.21553 1.23264 1.18119 0.92202 0.91878 0.92037 0.88956 0.88781 0.75207 0.88816 0.87697 0.74612 0.90535 0.92017 0.90312 0.91551 0.86658 0.86738 0.86641 0.86497 0.93634 0.90448 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 37.16 0.34 -0.94 16 2 C -0.14 -1.35 6.42 -27.88 -0.18 -1.53 16 3 C 0.51 7.00 7.83 -10.98 -0.09 6.91 16 4 O -0.54 -9.46 15.98 5.56 0.09 -9.38 16 5 N -0.72 -9.76 5.53 -61.47 -0.34 -10.10 16 6 C 0.10 1.46 6.15 -5.19 -0.03 1.42 16 7 C 0.51 8.43 7.88 -10.98 -0.09 8.34 16 8 O -0.56 -10.45 15.67 5.56 0.09 -10.36 16 9 N -0.69 -11.44 3.28 -60.29 -0.20 -11.63 16 10 C 0.14 2.29 4.56 -4.04 -0.02 2.27 16 11 C 0.16 2.66 3.02 -67.64 -0.20 2.46 16 12 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 13 C -0.10 -1.53 5.21 -28.04 -0.15 -1.68 16 14 C -0.06 -0.97 5.62 -104.60 -0.59 -1.56 16 15 C -0.13 -1.90 9.59 -39.43 -0.38 -2.28 16 16 C -0.13 -1.85 10.04 -39.69 -0.40 -2.25 16 17 C -0.13 -1.88 10.05 -39.67 -0.40 -2.28 16 18 C -0.13 -2.08 9.62 -39.47 -0.38 -2.46 16 19 C -0.08 -1.50 4.22 -104.56 -0.44 -1.94 16 20 C 0.17 3.33 5.14 -5.04 -0.03 3.31 16 21 N -0.60 -12.32 2.46 -166.38 -0.41 -12.73 16 22 C -0.29 -6.98 8.35 -15.06 -0.13 -7.10 16 23 H 0.11 2.67 4.86 -52.49 -0.25 2.41 16 24 C 0.04 1.10 5.27 -17.43 -0.09 1.01 16 25 N -0.89 -25.76 13.97 55.49 0.78 -24.98 16 26 Si 0.86 21.34 24.41 -169.99 -4.15 17.19 16 27 H -0.29 -6.97 6.70 56.52 0.38 -6.59 16 28 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 29 H -0.26 -6.31 6.21 56.52 0.35 -5.96 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.41 5.19 7.44 -40.82 -0.30 4.89 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.42 6.82 7.12 -40.82 -0.29 6.53 16 39 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 42 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 43 H 0.12 1.45 8.05 -52.49 -0.42 1.03 16 44 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 46 H 0.12 1.78 8.05 -52.48 -0.42 1.36 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 1.72 3.96 -51.93 -0.21 1.52 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -32.09 388.75 -8.95 -41.04 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -7.42 Total: 13.38 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -3.24 Total: 1.70 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.17 Total: -59.44 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.18 Total: -19.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.09 -8.95 -41.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755073776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.311 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds