Wall clock time and date at job start Wed Apr 1 2020 05:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46992 * 2 1 4 4 O 1.21281 * 120.00060 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99814 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99781 * 180.27710 * 5 3 2 7 7 C 1.50709 * 109.47130 * 179.72631 * 6 5 3 8 8 O 1.21274 * 119.99598 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99870 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99604 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46952 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.76574 * 294.24923 * 11 10 9 13 13 C 1.52791 * 109.77534 * 173.44308 * 11 10 9 14 14 C 1.50597 * 110.83779 * 192.85440 * 13 11 10 15 15 C 1.38984 * 117.61402 * 199.56184 * 14 13 11 16 16 C 1.37906 * 120.57923 * 181.14140 * 15 14 13 17 17 C 1.38264 * 119.82592 * 359.95444 * 16 15 14 18 18 C 1.37958 * 119.71848 * 359.75364 * 17 16 15 19 19 C 1.37675 * 122.86239 * 20.22655 * 14 13 11 20 20 C 1.50810 * 122.34166 * 358.56611 * 19 14 13 21 21 N 1.46683 * 109.68760 * 11.45471 * 20 19 14 22 22 C 1.36940 * 121.32636 * 135.69852 * 21 20 19 23 23 H 1.08000 * 119.99574 * 144.29639 * 22 21 20 24 24 C 1.38809 * 120.00376 * 324.29403 * 22 21 20 25 25 N 1.31617 * 120.00222 * 158.39227 * 24 22 21 26 26 Si 1.86807 * 119.99632 * 338.39009 * 24 22 21 27 27 H 1.48509 * 109.46912 * 95.35633 * 26 24 22 28 28 H 1.48502 * 109.47148 * 215.35121 * 26 24 22 29 29 H 1.48497 * 109.47211 * 335.35581 * 26 24 22 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47144 * 299.99714 * 1 2 3 32 32 H 1.08997 * 109.47528 * 59.99762 * 1 2 3 33 33 H 1.09003 * 109.47144 * 240.00286 * 2 1 3 34 34 H 1.08997 * 109.47528 * 120.00238 * 2 1 3 35 35 H 0.96996 * 119.99948 * 0.02562 * 5 3 2 36 36 H 1.09004 * 109.47134 * 299.72453 * 6 5 3 37 37 H 1.09000 * 109.47344 * 59.72597 * 6 5 3 38 38 H 0.96997 * 119.99926 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.46948 * 299.99554 * 10 9 7 40 40 H 1.08998 * 109.46941 * 60.00279 * 10 9 7 41 41 H 1.08996 * 109.20151 * 313.20066 * 13 11 10 42 42 H 1.09001 * 109.20430 * 72.50153 * 13 11 10 43 43 H 1.07994 * 119.70361 * 1.11939 * 15 14 13 44 44 H 1.07996 * 120.08588 * 179.97438 * 16 15 14 45 45 H 1.08004 * 120.13771 * 179.76346 * 17 16 15 46 46 H 1.08007 * 119.74190 * 180.02562 * 18 17 16 47 47 H 1.08992 * 109.43764 * 251.38828 * 20 19 14 48 48 H 1.09004 * 109.40067 * 131.49688 * 20 19 14 49 49 H 0.97002 * 119.99907 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0056 7 6 5.3528 3.0483 0.0104 8 8 5.9591 1.9981 0.0084 9 7 6.0266 4.2156 0.0170 10 6 7.4916 4.2155 0.0211 11 6 8.0016 5.6581 0.0276 12 1 7.7298 6.1494 -0.9068 13 6 9.5201 5.6687 0.1961 14 6 10.0137 7.0546 0.5180 15 6 11.3582 7.3274 0.2957 16 6 11.8803 8.5692 0.5912 17 6 11.0610 9.5534 1.1125 18 6 9.7246 9.2872 1.3285 19 6 9.1971 8.0387 1.0283 20 6 7.7265 7.8174 1.2785 21 7 7.4152 6.3886 1.1634 22 6 6.6108 5.7595 2.0758 23 1 5.9387 4.9775 1.7545 24 6 6.6592 6.1267 3.4136 25 7 5.6420 5.8624 4.2058 26 14 8.1683 6.9961 4.0893 27 1 7.9446 8.4641 4.0687 28 1 8.4116 6.5521 5.4854 29 1 9.3481 6.6633 3.2512 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9877 0.9299 -0.0013 36 1 3.4852 3.5651 -0.8839 37 1 3.4795 3.5592 0.8961 38 1 5.5415 5.0555 0.0182 39 1 7.8523 3.6982 0.9100 40 1 7.8573 3.7053 -0.8699 41 1 9.7957 4.9930 1.0057 42 1 9.9859 5.3280 -0.7286 43 1 11.9997 6.5601 -0.1117 44 1 12.9264 8.7724 0.4157 45 1 11.4654 10.5264 1.3493 46 1 9.0841 10.0559 1.7353 47 1 7.1457 8.3754 0.5442 48 1 7.4735 8.1641 2.2804 49 1 5.6757 6.1194 5.1406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755073776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:02 Heat of formation + Delta-G solvation = -38.288716 kcal Electronic energy + Delta-G solvation = -30493.690337 eV Core-core repulsion = 26420.494713 eV Total energy + Delta-G solvation = -4073.195625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.36162 -40.87710 -40.15319 -38.25364 -35.67139 -35.32093 -34.56367 -33.67974 -33.40625 -32.03002 -31.00714 -29.26450 -27.34954 -26.55496 -24.89548 -24.62676 -23.01053 -22.53888 -21.61286 -21.33182 -20.53704 -19.14952 -18.31491 -17.84287 -17.41556 -17.18082 -17.09800 -16.80384 -16.66304 -16.30362 -16.03060 -15.79749 -15.59034 -15.16209 -14.92276 -14.61439 -14.55321 -14.39067 -14.09364 -13.99749 -13.89220 -13.77775 -13.40304 -13.12127 -13.04090 -12.89783 -12.77474 -12.60754 -12.57501 -12.26225 -12.13873 -11.99707 -11.86892 -11.58135 -11.43304 -11.04102 -10.93688 -10.67363 -10.22816 -9.85780 -9.64044 -9.38162 -8.80021 -8.13829 -5.51249 0.48582 0.50633 1.25746 1.39783 1.50719 1.54601 1.65471 1.89184 2.42944 2.55563 2.87071 3.07150 3.23722 3.68270 3.75886 3.85989 3.91435 4.10290 4.16085 4.24718 4.27440 4.33017 4.35222 4.38164 4.39142 4.43192 4.55623 4.63017 4.70642 4.76983 4.82962 4.87331 4.88844 4.93936 5.02451 5.09738 5.15185 5.19618 5.24905 5.34498 5.41170 5.51734 5.58850 5.62014 5.80634 5.95031 6.16998 6.27163 6.50415 6.54905 6.93517 7.17207 7.22326 7.61846 8.09269 9.01401 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.002700 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.326732 B =10369.777571 C =11300.420108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.505 3.495 4 O -0.587 6.587 5 N -0.713 5.713 6 C 0.104 3.896 7 C 0.510 3.490 8 O -0.578 6.578 9 N -0.693 5.693 10 C 0.141 3.859 11 C 0.160 3.840 12 H 0.073 0.927 13 C -0.092 4.092 14 C -0.078 4.078 15 C -0.129 4.129 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.143 4.143 19 C -0.109 4.109 20 C 0.168 3.832 21 N -0.611 5.611 22 C -0.249 4.249 23 H 0.105 0.895 24 C -0.016 4.016 25 N -0.944 5.944 26 Si 0.913 3.087 27 H -0.287 1.287 28 H -0.328 1.328 29 H -0.253 1.253 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.417 0.583 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.416 0.584 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.143 0.857 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.119 0.881 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -3.847 -13.148 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.294 3.706 4 O -0.467 6.467 5 N -0.368 5.368 6 C -0.024 4.024 7 C 0.296 3.704 8 O -0.459 6.459 9 N -0.344 5.344 10 C 0.017 3.983 11 C 0.055 3.945 12 H 0.091 0.909 13 C -0.131 4.131 14 C -0.078 4.078 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.162 4.162 19 C -0.110 4.110 20 C 0.043 3.957 21 N -0.337 5.337 22 C -0.378 4.378 23 H 0.122 0.878 24 C -0.212 4.212 25 N -0.590 5.590 26 Si 0.745 3.255 27 H -0.215 1.215 28 H -0.259 1.259 29 H -0.177 1.177 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.255 0.745 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.162 0.838 46 H 0.137 0.863 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.401 -3.924 -13.023 14.296 hybrid contribution 0.675 0.979 1.563 1.964 sum 5.075 -2.945 -11.461 12.875 Atomic orbital electron populations 1.21545 0.93100 1.02800 1.01947 1.21700 0.98367 0.90754 1.06711 1.21630 0.81114 0.93484 0.74409 1.90692 1.56208 1.48260 1.51535 1.45790 1.07870 1.08056 1.75108 1.20965 0.90394 0.86138 1.04867 1.20536 0.90019 0.83934 0.75869 1.90615 1.70575 1.32034 1.52716 1.46022 1.07981 1.08697 1.71719 1.21289 0.79210 0.96353 1.01432 1.21039 0.91480 0.90890 0.91097 0.90877 1.20903 0.96812 0.92970 1.02371 1.19685 0.94106 0.95369 0.98651 1.21483 0.94150 0.98161 1.00849 1.21378 1.00830 0.93117 0.99167 1.21330 0.93021 1.00618 0.99660 1.21294 0.96942 0.96397 1.01531 1.20337 0.96884 0.94488 0.99317 1.20046 0.90351 0.85983 0.99319 1.44546 1.56775 1.03782 1.28554 1.19533 1.13185 1.18558 0.86537 0.87824 1.25949 0.98089 1.00106 0.97084 1.69926 1.30648 1.52233 1.06173 0.86352 0.85233 0.77904 0.76038 1.21499 1.25875 1.17720 0.89293 0.93803 0.93141 0.86041 0.86877 0.74459 0.87185 0.89642 0.74622 0.93542 0.89286 0.92086 0.87816 0.83965 0.83253 0.83788 0.86313 0.92558 0.93379 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.20 71.98 0.66 -1.73 16 2 C -0.14 -2.30 6.42 29.85 0.19 -2.11 16 3 C 0.50 13.61 7.83 87.66 0.69 14.30 16 4 O -0.59 -20.79 15.98 -3.03 -0.05 -20.84 16 5 N -0.71 -19.09 5.53 -466.77 -2.58 -21.67 16 6 C 0.10 3.10 6.15 85.64 0.53 3.62 16 7 C 0.51 16.79 7.88 87.66 0.69 17.48 16 8 O -0.58 -21.26 15.67 -3.01 -0.05 -21.31 16 9 N -0.69 -22.57 3.28 -463.06 -1.52 -24.09 16 10 C 0.14 4.51 4.56 86.38 0.39 4.90 16 11 C 0.16 5.12 3.02 44.79 0.14 5.25 16 12 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 13 C -0.09 -2.70 5.21 29.75 0.15 -2.54 16 14 C -0.08 -2.48 5.62 -19.85 -0.11 -2.59 16 15 C -0.13 -3.34 9.59 22.37 0.21 -3.13 16 16 C -0.13 -2.99 10.04 22.20 0.22 -2.77 16 17 C -0.13 -3.29 10.05 22.21 0.22 -3.06 16 18 C -0.14 -4.51 9.62 22.34 0.21 -4.29 16 19 C -0.11 -3.85 4.22 -19.82 -0.08 -3.93 16 20 C 0.17 6.63 5.14 85.63 0.44 7.07 16 21 N -0.61 -24.88 2.46 -680.31 -1.67 -26.55 16 22 C -0.25 -12.25 8.35 84.03 0.70 -11.55 16 23 H 0.10 5.19 4.86 -2.91 -0.01 5.18 16 24 C -0.02 -0.89 5.27 84.86 0.45 -0.44 16 25 N -0.94 -56.95 13.97 21.65 0.30 -56.65 16 26 Si 0.91 46.00 24.41 68.60 1.67 47.68 16 27 H -0.29 -14.15 6.70 99.48 0.67 -13.48 16 28 H -0.33 -17.61 7.11 99.48 0.71 -16.90 16 29 H -0.25 -12.38 6.21 99.48 0.62 -11.76 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.42 10.13 7.44 -92.71 -0.69 9.45 16 36 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.42 13.55 7.12 -92.71 -0.66 12.89 16 39 H 0.05 1.78 7.89 -2.39 -0.02 1.77 16 40 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.06 2.02 8.01 -2.39 -0.02 2.01 16 42 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 43 H 0.14 2.86 8.05 -2.91 -0.02 2.84 16 44 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 45 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 46 H 0.12 3.54 8.05 -2.91 -0.02 3.52 16 47 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.05 2.18 3.96 -2.39 -0.01 2.17 16 49 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -72.75 388.75 1.32 -71.43 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.50 Total: 37.53 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 5.71 Total: 14.47 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -5.47 Total: -128.96 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.10 Total: -42.15 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.68 kcal Total: -72.75 1.32 -71.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755073776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.136 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds