Wall clock time and date at job start Wed Apr 1 2020 03:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47377 * 2 1 4 4 C 1.50698 * 109.47251 * 120.00532 * 2 1 3 5 5 C 1.34515 * 125.78643 * 260.00030 * 4 2 1 6 6 C 1.41381 * 106.84118 * 180.02562 * 5 4 2 7 7 C 1.34516 * 106.84329 * 359.97438 * 6 5 4 8 8 O 1.34301 * 125.79503 * 80.34200 * 4 2 1 9 9 N 1.46907 * 109.46693 * 240.00089 * 2 1 3 10 10 C 1.46893 * 111.00109 * 69.75322 * 9 2 1 11 11 C 1.50697 * 109.47086 * 160.31773 * 10 9 2 12 12 O 1.21273 * 120.00206 * 359.42595 * 11 10 9 13 13 N 1.34776 * 119.99778 * 179.41725 * 11 10 9 14 14 C 1.46507 * 119.99736 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47236 * 90.00133 * 14 13 11 16 16 H 1.08007 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00438 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99247 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00439 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47193 * 59.99911 * 19 17 15 21 21 H 1.48496 * 109.47440 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47038 * 300.00388 * 19 17 15 23 23 C 1.46503 * 120.00500 * 0.02562 * 13 11 10 24 24 C 1.52997 * 109.46947 * 89.99490 * 23 13 11 25 25 C 1.47203 * 109.46977 * 180.02562 * 24 23 13 26 26 N 6.89792 * 81.71776 * 311.74771 * 2 1 3 27 27 C 1.46900 * 111.00088 * 305.80016 * 9 2 1 28 28 C 1.53001 * 117.50001 * 140.87198 * 27 9 2 29 29 C 1.53000 * 117.49684 * 72.24978 * 27 9 2 30 30 H 1.09001 * 109.46971 * 309.17928 * 1 2 3 31 31 H 1.08996 * 109.47298 * 69.17573 * 1 2 3 32 32 H 1.09001 * 109.47264 * 189.18004 * 1 2 3 33 33 H 1.07996 * 126.57943 * 0.02562 * 5 4 2 34 34 H 1.08001 * 126.58168 * 180.02562 * 6 5 4 35 35 H 1.07990 * 125.79169 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47498 * 280.32252 * 10 9 2 37 37 H 1.09007 * 109.47130 * 40.31896 * 10 9 2 38 38 H 1.09007 * 109.46916 * 209.99844 * 14 13 11 39 39 H 1.08994 * 109.47199 * 329.99852 * 14 13 11 40 40 H 0.97006 * 119.99281 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47229 * 209.99682 * 23 13 11 42 42 H 1.09004 * 109.46473 * 329.99786 * 23 13 11 43 43 H 1.09001 * 109.47639 * 300.00573 * 24 23 13 44 44 H 1.09003 * 109.47054 * 60.00306 * 24 23 13 45 45 H 1.09007 * 115.54869 * 286.58463 * 27 9 2 46 46 H 1.09001 * 117.49327 * 0.02562 * 28 27 9 47 47 H 1.09000 * 117.49233 * 145.01631 * 28 27 9 48 48 H 1.09008 * 117.49660 * 214.97794 * 29 27 9 49 49 H 1.08992 * 117.50063 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.4732 -0.1192 2.3553 6 6 2.8444 -1.1544 3.2438 7 6 2.6077 -2.3165 2.6089 8 8 2.1219 -2.0413 1.3874 9 7 2.0196 -0.6925 -1.1995 10 6 1.7476 0.0945 -2.4097 11 6 2.6505 -0.3688 -3.5237 12 8 3.4498 -1.2591 -3.3258 13 7 2.5696 0.2062 -4.7399 14 6 3.4471 -0.2446 -5.8231 15 6 2.7749 -1.3586 -6.5834 16 1 1.7921 -1.6968 -6.2895 17 6 3.4139 -1.9456 -7.6550 18 7 4.6104 -1.5334 -8.0131 19 14 2.5804 -3.3259 -8.5978 20 1 1.3013 -2.8333 -9.1690 21 1 3.4698 -3.7830 -9.6957 22 1 2.3077 -4.4594 -7.6780 23 6 1.6043 1.2820 -4.9789 24 6 2.2562 2.6306 -4.6672 25 6 1.2861 3.7115 -4.9067 26 7 0.5364 4.5451 -5.0927 27 6 1.4387 -2.0377 -1.3048 28 6 1.0400 -2.5280 -2.6982 29 6 -0.0396 -2.1409 -1.6855 30 1 -0.3633 0.6492 0.7966 31 1 -0.3634 0.3653 -0.9605 32 1 -0.3634 -1.0145 0.1640 33 1 2.5323 0.9426 2.5436 34 1 3.2411 -1.0351 4.2412 35 1 2.7831 -3.3031 3.0113 36 1 0.7072 -0.0410 -2.7050 37 1 1.9331 1.1493 -2.2064 38 1 3.6471 0.5872 -6.4986 39 1 4.3859 -0.6059 -5.4036 40 1 5.0601 -1.9466 -8.7668 41 1 1.2900 1.2630 -6.0224 42 1 0.7361 1.1406 -4.3352 43 1 2.5706 2.6497 -3.6237 44 1 3.1244 2.7719 -5.3108 45 1 1.8307 -2.7752 -0.6044 46 1 1.2092 -1.8526 -3.5368 47 1 1.1700 -3.5883 -2.9148 48 1 -0.6200 -2.9467 -1.2360 49 1 -0.5809 -1.2109 -1.8583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086233675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:13 Heat of formation + Delta-G solvation = 67.476848 kcal Electronic energy + Delta-G solvation = -31342.002052 eV Core-core repulsion = 27273.392766 eV Total energy + Delta-G solvation = -4068.609286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.62576 -40.30577 -38.27632 -36.80540 -35.16116 -34.57415 -32.98732 -32.89113 -31.25222 -30.82038 -28.62966 -28.10252 -26.26095 -24.01402 -23.49832 -22.79990 -22.10013 -21.66623 -20.86981 -19.82428 -18.42012 -17.60564 -17.39967 -16.72039 -16.48662 -16.34641 -15.99547 -15.72735 -15.18079 -14.79814 -14.63564 -14.34477 -14.06471 -13.85563 -13.71228 -13.31440 -13.20558 -12.90346 -12.86062 -12.70288 -12.46311 -12.45029 -12.38207 -12.17391 -12.00795 -11.79820 -11.51026 -11.30759 -11.21449 -11.05973 -10.96798 -10.85894 -10.60365 -10.48272 -10.18845 -9.94735 -9.90307 -9.69788 -8.98685 -8.55790 -8.46033 -8.09701 -7.80940 -6.07843 -4.12361 1.70863 2.55874 2.70749 2.78731 2.96742 3.29978 3.32774 3.35269 3.37463 3.43534 3.84567 4.03257 4.27070 4.41241 4.43284 4.78549 4.87113 4.92100 4.95669 5.02675 5.03472 5.08901 5.11524 5.15751 5.22072 5.26630 5.27780 5.30726 5.41862 5.48388 5.53870 5.74250 5.77592 5.81039 5.81957 5.95127 6.01108 6.05132 6.21080 6.27800 6.38867 6.45295 6.78332 6.99004 7.03233 7.16616 7.39109 7.46018 7.55359 7.88278 8.18491 8.29033 8.86693 9.05395 9.53160 11.00190 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.003557 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.058089 B = 7869.674965 C = 9584.567086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.163 3.837 3 H 0.110 0.890 4 C 0.020 3.980 5 C -0.215 4.215 6 C -0.215 4.215 7 C -0.048 4.048 8 O -0.162 6.162 9 N -0.479 5.479 10 C 0.022 3.978 11 C 0.509 3.491 12 O -0.502 6.502 13 N -0.602 5.602 14 C 0.248 3.752 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.118 3.882 24 C -0.051 4.051 25 C 0.217 3.783 26 N -0.446 5.446 27 C 0.038 3.962 28 C -0.165 4.165 29 C -0.232 4.232 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.198 0.802 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.047 0.953 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 3.962 18.686 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.055 3.945 3 H 0.128 0.872 4 C -0.031 4.031 5 C -0.235 4.235 6 C -0.234 4.234 7 C -0.115 4.115 8 O -0.057 6.057 9 N -0.200 5.200 10 C -0.109 4.109 11 C 0.294 3.706 12 O -0.375 6.375 13 N -0.336 5.336 14 C 0.129 3.871 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.009 4.009 24 C -0.093 4.093 25 C -0.101 4.101 26 N -0.123 5.123 27 C -0.071 4.071 28 C -0.202 4.202 29 C -0.271 4.271 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.215 0.785 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.147 0.853 46 H 0.124 0.876 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.386 4.417 18.185 20.118 hybrid contribution -0.854 -0.874 -0.407 1.288 sum -8.240 3.542 17.778 19.912 Atomic orbital electron populations 1.22785 0.95718 1.03798 1.02425 1.20302 0.93171 0.96074 0.84927 0.87247 1.22138 1.03318 0.80689 0.97001 1.21472 1.07226 1.00426 0.94335 1.21752 1.07603 0.92298 1.01733 1.24027 1.03247 1.00329 0.83934 1.84109 1.64703 1.24609 1.32321 1.61792 1.56662 1.01262 1.00321 1.22276 0.98971 0.98474 0.91153 1.19959 0.84611 0.83170 0.82811 1.90735 1.37008 1.28523 1.81266 1.48248 1.38655 1.34871 1.11809 1.19309 0.89867 0.94906 0.83026 1.21360 1.03316 1.18598 1.13359 0.92507 1.24899 0.94830 0.96985 0.97168 1.69912 1.13211 1.42237 1.27842 0.86610 0.79192 0.82551 0.79390 1.20300 1.21242 1.20179 1.21288 0.91411 0.84371 1.03846 1.19928 0.95321 0.88988 1.05039 1.29153 0.93996 0.94092 0.92906 1.81229 1.10587 1.11207 1.09294 1.22672 0.92695 0.91571 1.00153 1.23359 1.00648 1.02996 0.93221 1.23762 0.93612 1.03336 1.06435 0.91885 0.91493 0.90559 0.83724 0.83794 0.78485 0.91435 0.88537 0.94860 0.93546 0.92647 0.88749 0.91047 0.87627 0.86377 0.85291 0.87630 0.88476 0.88901 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 7.48 37.16 0.28 -1.39 16 2 C 0.16 1.73 2.76 -68.86 -0.19 1.54 16 3 H 0.11 0.96 7.82 -51.93 -0.41 0.56 16 4 C 0.02 0.23 6.02 -35.63 -0.21 0.02 16 5 C -0.21 -2.27 10.80 -39.70 -0.43 -2.70 16 6 C -0.21 -2.12 10.91 -39.70 -0.43 -2.55 16 7 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 8 O -0.16 -2.02 8.12 5.71 0.05 -1.97 16 9 N -0.48 -6.50 4.26 -221.52 -0.94 -7.44 16 10 C 0.02 0.28 2.92 -4.98 -0.01 0.27 16 11 C 0.51 9.07 5.28 -10.99 -0.06 9.01 16 12 O -0.50 -11.45 14.57 5.56 0.08 -11.37 16 13 N -0.60 -10.59 2.46 -175.06 -0.43 -11.02 16 14 C 0.25 5.73 5.16 -5.19 -0.03 5.71 16 15 C -0.53 -13.77 9.39 -34.44 -0.32 -14.09 16 16 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.12 1.49 5.18 -4.04 -0.02 1.47 16 24 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 25 C 0.22 2.50 15.43 -20.74 -0.32 2.18 16 26 N -0.45 -6.34 18.54 42.17 0.78 -5.56 16 27 C 0.04 0.54 4.69 -67.71 -0.32 0.22 16 28 C -0.17 -2.59 8.49 -26.73 -0.23 -2.82 16 29 C -0.23 -2.80 7.25 -26.73 -0.19 -2.99 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.55 5.70 -51.93 -0.30 0.25 16 32 H 0.08 0.74 5.91 -51.93 -0.31 0.44 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.07 0.79 4.32 -51.93 -0.22 0.56 16 37 H 0.10 0.94 6.81 -51.93 -0.35 0.59 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.07 0.74 6.42 -51.93 -0.33 0.41 16 43 H 0.11 0.83 7.24 -51.93 -0.38 0.46 16 44 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.13 1.93 6.27 -51.92 -0.33 1.60 16 46 H 0.11 1.90 4.65 -51.93 -0.24 1.66 16 47 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 48 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 49 H 0.09 1.03 4.89 -51.93 -0.25 0.77 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -33.49 393.89 -8.07 -41.56 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.85 Total: 3.73 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.41 Total: -5.31 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.14 Total: -48.61 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.13 Total: -13.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.49 -8.07 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086233675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.034 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds