Wall clock time and date at job start Wed Apr 1 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47377 * 2 1 4 4 C 1.50698 * 109.47251 * 120.00532 * 2 1 3 5 5 C 1.34515 * 125.78643 * 260.00030 * 4 2 1 6 6 C 1.41381 * 106.84118 * 180.02562 * 5 4 2 7 7 C 1.34516 * 106.84329 * 359.97438 * 6 5 4 8 8 O 1.34301 * 125.79503 * 80.34200 * 4 2 1 9 9 N 1.46907 * 109.46693 * 240.00089 * 2 1 3 10 10 C 1.46893 * 111.00109 * 69.75322 * 9 2 1 11 11 C 1.50697 * 109.47086 * 160.31773 * 10 9 2 12 12 O 1.21273 * 120.00206 * 359.42595 * 11 10 9 13 13 N 1.34776 * 119.99778 * 179.41725 * 11 10 9 14 14 C 1.46507 * 119.99736 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47236 * 90.00133 * 14 13 11 16 16 H 1.08007 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00438 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99247 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00439 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47193 * 59.99911 * 19 17 15 21 21 H 1.48496 * 109.47440 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47038 * 300.00388 * 19 17 15 23 23 C 1.46503 * 120.00500 * 0.02562 * 13 11 10 24 24 C 1.52997 * 109.46947 * 89.99490 * 23 13 11 25 25 C 1.47203 * 109.46977 * 180.02562 * 24 23 13 26 26 N 6.89792 * 81.71776 * 311.74771 * 2 1 3 27 27 C 1.46900 * 111.00088 * 305.80016 * 9 2 1 28 28 C 1.53001 * 117.50001 * 140.87198 * 27 9 2 29 29 C 1.53000 * 117.49684 * 72.24978 * 27 9 2 30 30 H 1.09001 * 109.46971 * 309.17928 * 1 2 3 31 31 H 1.08996 * 109.47298 * 69.17573 * 1 2 3 32 32 H 1.09001 * 109.47264 * 189.18004 * 1 2 3 33 33 H 1.07996 * 126.57943 * 0.02562 * 5 4 2 34 34 H 1.08001 * 126.58168 * 180.02562 * 6 5 4 35 35 H 1.07990 * 125.79169 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47498 * 280.32252 * 10 9 2 37 37 H 1.09007 * 109.47130 * 40.31896 * 10 9 2 38 38 H 1.09007 * 109.46916 * 209.99844 * 14 13 11 39 39 H 1.08994 * 109.47199 * 329.99852 * 14 13 11 40 40 H 0.97006 * 119.99281 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47229 * 209.99682 * 23 13 11 42 42 H 1.09004 * 109.46473 * 329.99786 * 23 13 11 43 43 H 1.09001 * 109.47639 * 300.00573 * 24 23 13 44 44 H 1.09003 * 109.47054 * 60.00306 * 24 23 13 45 45 H 1.09007 * 115.54869 * 286.58463 * 27 9 2 46 46 H 1.09001 * 117.49327 * 0.02562 * 28 27 9 47 47 H 1.09000 * 117.49233 * 145.01631 * 28 27 9 48 48 H 1.09008 * 117.49660 * 214.97794 * 29 27 9 49 49 H 1.08992 * 117.50063 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.4732 -0.1192 2.3553 6 6 2.8444 -1.1544 3.2438 7 6 2.6077 -2.3165 2.6089 8 8 2.1219 -2.0413 1.3874 9 7 2.0196 -0.6925 -1.1995 10 6 1.7476 0.0945 -2.4097 11 6 2.6505 -0.3688 -3.5237 12 8 3.4498 -1.2591 -3.3258 13 7 2.5696 0.2062 -4.7399 14 6 3.4471 -0.2446 -5.8231 15 6 2.7749 -1.3586 -6.5834 16 1 1.7921 -1.6968 -6.2895 17 6 3.4139 -1.9456 -7.6550 18 7 4.6104 -1.5334 -8.0131 19 14 2.5804 -3.3259 -8.5978 20 1 1.3013 -2.8333 -9.1690 21 1 3.4698 -3.7830 -9.6957 22 1 2.3077 -4.4594 -7.6780 23 6 1.6043 1.2820 -4.9789 24 6 2.2562 2.6306 -4.6672 25 6 1.2861 3.7115 -4.9067 26 7 0.5364 4.5451 -5.0927 27 6 1.4387 -2.0377 -1.3048 28 6 1.0400 -2.5280 -2.6982 29 6 -0.0396 -2.1409 -1.6855 30 1 -0.3633 0.6492 0.7966 31 1 -0.3634 0.3653 -0.9605 32 1 -0.3634 -1.0145 0.1640 33 1 2.5323 0.9426 2.5436 34 1 3.2411 -1.0351 4.2412 35 1 2.7831 -3.3031 3.0113 36 1 0.7072 -0.0410 -2.7050 37 1 1.9331 1.1493 -2.2064 38 1 3.6471 0.5872 -6.4986 39 1 4.3859 -0.6059 -5.4036 40 1 5.0601 -1.9466 -8.7668 41 1 1.2900 1.2630 -6.0224 42 1 0.7361 1.1406 -4.3352 43 1 2.5706 2.6497 -3.6237 44 1 3.1244 2.7719 -5.3108 45 1 1.8307 -2.7752 -0.6044 46 1 1.2092 -1.8526 -3.5368 47 1 1.1700 -3.5883 -2.9148 48 1 -0.6200 -2.9467 -1.2360 49 1 -0.5809 -1.2109 -1.8583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086233675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:11 Heat of formation + Delta-G solvation = 46.453662 kcal Electronic energy + Delta-G solvation = -31342.913686 eV Core-core repulsion = 27273.392766 eV Total energy + Delta-G solvation = -4069.520920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.40238 -41.47249 -39.49078 -37.88122 -36.54222 -35.52355 -34.83305 -33.74814 -32.32125 -32.00378 -29.66330 -29.28003 -27.66202 -25.26018 -24.57858 -24.19314 -23.13123 -22.47305 -21.86723 -20.75649 -19.70860 -18.76772 -18.32896 -18.27593 -17.77982 -17.42122 -17.06303 -16.83187 -16.45214 -16.06313 -15.63937 -15.58449 -15.38771 -14.83499 -14.59812 -14.42020 -14.28232 -14.16012 -13.77126 -13.67309 -13.53875 -13.49396 -13.44694 -13.24947 -13.19742 -12.95257 -12.83022 -12.71150 -12.49028 -12.47787 -12.21877 -12.12912 -12.05184 -11.81600 -11.63358 -11.48048 -10.97033 -10.70549 -10.55595 -10.42378 -9.37828 -9.36423 -9.03687 -8.14842 -6.26325 0.93431 1.39866 1.42939 1.49172 1.72784 1.81404 1.87426 2.01554 2.23794 2.26301 2.45074 2.84740 2.98616 3.16029 3.22478 3.62894 3.80550 3.92771 3.99269 4.05154 4.09304 4.14237 4.19309 4.27201 4.28980 4.35149 4.37548 4.45437 4.62163 4.71755 4.78066 4.87376 4.88741 4.99712 5.04419 5.09091 5.10545 5.16543 5.18270 5.20163 5.29575 5.39384 5.41752 5.66335 5.71432 5.89968 5.98833 6.06123 6.17721 6.39305 6.64250 6.81903 6.89733 7.39742 7.67653 8.91431 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.003557 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.058089 B = 7869.674965 C = 9584.567086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.164 3.836 3 H 0.132 0.868 4 C -0.004 4.004 5 C -0.220 4.220 6 C -0.225 4.225 7 C -0.059 4.059 8 O -0.185 6.185 9 N -0.501 5.501 10 C 0.034 3.966 11 C 0.506 3.494 12 O -0.563 6.563 13 N -0.602 5.602 14 C 0.264 3.736 15 C -0.534 4.534 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.953 3.047 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.113 3.887 24 C -0.039 4.039 25 C 0.246 3.754 26 N -0.489 5.489 27 C 0.039 3.961 28 C -0.197 4.197 29 C -0.193 4.193 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.223 0.777 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.032 0.968 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 5.452 20.448 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.057 3.943 3 H 0.150 0.850 4 C -0.055 4.055 5 C -0.239 4.239 6 C -0.244 4.244 7 C -0.127 4.127 8 O -0.082 6.082 9 N -0.222 5.222 10 C -0.096 4.096 11 C 0.294 3.706 12 O -0.441 6.441 13 N -0.335 5.335 14 C 0.143 3.857 15 C -0.573 4.573 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.567 5.567 19 Si 0.779 3.221 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.012 4.012 24 C -0.080 4.080 25 C -0.071 4.071 26 N -0.167 5.167 27 C -0.070 4.070 28 C -0.235 4.235 29 C -0.232 4.232 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.240 0.760 36 H 0.105 0.895 37 H 0.156 0.844 38 H 0.050 0.950 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.124 0.876 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.525 5.952 19.961 22.904 hybrid contribution -0.140 -1.376 -0.876 1.637 sum -9.665 4.576 19.085 21.877 Atomic orbital electron populations 1.22733 0.94187 1.03577 1.03706 1.20491 0.94407 0.96462 0.82949 0.85011 1.22503 1.04398 0.80635 0.97943 1.21819 1.06447 1.01549 0.94091 1.22110 1.07474 0.92124 1.02650 1.24673 1.02776 1.01849 0.83362 1.84095 1.65312 1.25337 1.33411 1.61645 1.57869 1.01203 1.01529 1.22233 0.98195 1.00162 0.89044 1.20888 0.84221 0.81925 0.83537 1.90708 1.39790 1.31226 1.82349 1.48093 1.38665 1.36040 1.10690 1.18717 0.88985 0.94031 0.83973 1.21711 1.03134 1.19144 1.13281 0.92874 1.25685 0.95431 0.99259 0.98375 1.70023 1.14518 1.43631 1.28495 0.85688 0.78808 0.79612 0.78034 1.18745 1.20914 1.20673 1.21510 0.91427 0.84104 1.04160 1.19854 0.94435 0.86635 1.07060 1.29158 0.93068 0.93428 0.91460 1.81276 1.11906 1.12616 1.10906 1.22527 0.94315 0.92059 0.98100 1.23221 1.04954 1.01522 0.93764 1.23810 0.92515 1.04235 1.02660 0.90184 0.90326 0.91736 0.81838 0.81808 0.76016 0.89507 0.84428 0.95007 0.98120 0.92716 0.89976 0.87759 0.84386 0.86326 0.86793 0.89915 0.90379 0.87619 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 7.48 71.98 0.54 -1.98 16 2 C 0.16 2.97 2.76 44.17 0.12 3.09 16 3 H 0.13 1.74 7.82 -2.39 -0.02 1.73 16 4 C 0.00 -0.09 6.02 24.83 0.15 0.06 16 5 C -0.22 -4.15 10.80 22.19 0.24 -3.91 16 6 C -0.22 -4.03 10.91 22.19 0.24 -3.79 16 7 C -0.06 -1.13 12.09 66.97 0.81 -0.32 16 8 O -0.19 -4.49 8.12 -2.49 -0.02 -4.51 16 9 N -0.50 -12.69 4.26 -854.77 -3.64 -16.33 16 10 C 0.03 0.78 2.92 85.56 0.25 1.02 16 11 C 0.51 17.87 5.28 87.66 0.46 18.33 16 12 O -0.56 -26.74 14.57 -3.01 -0.04 -26.78 16 13 N -0.60 -20.97 2.46 -826.15 -2.03 -23.00 16 14 C 0.26 12.65 5.16 85.63 0.44 13.10 16 15 C -0.53 -28.62 9.39 25.60 0.24 -28.38 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 17 C 0.01 0.64 5.46 84.65 0.46 1.10 16 18 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 19 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 C 0.11 2.61 5.18 86.38 0.45 3.06 16 24 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 25 C 0.25 4.98 15.43 89.44 1.38 6.36 16 26 N -0.49 -12.85 18.54 20.01 0.37 -12.48 16 27 C 0.04 1.09 4.69 44.92 0.21 1.30 16 28 C -0.20 -6.29 8.49 30.59 0.26 -6.03 16 29 C -0.19 -4.29 7.25 30.59 0.22 -4.07 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.89 5.70 -2.39 -0.01 0.88 16 32 H 0.06 1.05 5.91 -2.39 -0.01 1.04 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.22 2.62 8.06 -2.92 -0.02 2.60 16 36 H 0.09 1.68 4.32 -2.39 -0.01 1.67 16 37 H 0.14 1.98 6.81 -2.38 -0.02 1.97 16 38 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 39 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 40 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 41 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 42 H 0.10 1.76 6.42 -2.39 -0.02 1.74 16 43 H 0.14 1.52 7.24 -2.39 -0.02 1.50 16 44 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.11 3.50 6.27 -2.38 -0.01 3.48 16 46 H 0.08 3.02 4.65 -2.39 -0.01 3.01 16 47 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.12 2.07 4.89 -2.39 -0.01 2.06 16 Total: -1.00 -78.22 393.89 4.58 -73.64 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.98 Total: 18.88 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.65 Total: -1.55 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -5.02 Total: -105.60 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.06 Total: -31.29 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -78.22 4.58 -73.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086233675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.096 kcal (2) G-P(sol) polarization free energy of solvation -78.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds