Wall clock time and date at job start Wed Apr 1 2020 03:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 C 1.38282 * 119.97587 * 79.99852 * 4 2 1 6 6 C 1.38237 * 120.11560 * 179.97438 * 5 4 2 7 7 C 1.38170 * 120.05842 * 0.02562 * 6 5 4 8 8 C 1.38721 * 119.93864 * 0.02562 * 7 6 5 9 9 O 1.35895 * 120.05188 * 180.02562 * 8 7 6 10 10 C 1.38122 * 119.96851 * 259.72929 * 4 2 1 11 11 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 12 12 C 1.46901 * 110.99788 * 183.95405 * 11 2 1 13 13 C 1.46901 * 110.99790 * 60.00351 * 11 2 1 14 14 C 1.50701 * 109.46921 * 189.99765 * 13 11 2 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 11 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 11 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47241 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47303 * 119.99759 * 22 20 18 25 25 H 1.48495 * 109.47340 * 239.99921 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 7.02105 * 83.10316 * 307.04885 * 2 1 3 30 30 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 32 32 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 33 33 H 1.08002 * 119.94299 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.97453 * 180.02562 * 6 5 4 35 35 H 1.07992 * 120.03030 * 180.02562 * 7 6 5 36 36 H 0.96701 * 113.99982 * 90.00738 * 9 8 7 37 37 H 1.07998 * 120.03358 * 359.97438 * 10 4 2 38 38 H 1.09001 * 109.47121 * 296.04690 * 12 11 2 39 39 H 1.09005 * 109.47342 * 56.04784 * 12 11 2 40 40 H 1.08999 * 109.46894 * 176.04703 * 12 11 2 41 41 H 1.09002 * 109.47401 * 69.99793 * 13 11 2 42 42 H 1.09001 * 109.46874 * 309.99805 * 13 11 2 43 43 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 44 44 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 45 45 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 47 47 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 48 48 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 49 49 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0665 -2.0924 1.2647 6 6 2.5273 -2.7471 2.3917 7 6 2.9545 -2.0217 3.4873 8 6 2.9202 -0.6353 3.4559 9 8 3.3403 0.0805 4.5320 10 6 2.4635 0.0195 2.3209 11 7 2.0197 -0.6925 -1.1994 12 6 3.4851 -0.7945 -1.1870 13 6 1.5488 -0.0263 -2.4211 14 6 1.8581 -0.8911 -3.6159 15 8 2.4156 -1.9575 -3.4646 16 7 1.5144 -0.4798 -4.8525 17 6 1.8146 -1.3207 -6.0139 18 6 0.6566 -2.2492 -6.2747 19 1 -0.2156 -2.2164 -5.6386 20 6 0.7106 -3.1404 -7.3252 21 7 1.7725 -3.1799 -8.1001 22 14 -0.7251 -4.2908 -7.6489 23 1 -1.7899 -4.0489 -6.6424 24 1 -1.2635 -4.0398 -9.0099 25 1 -0.2631 -5.6987 -7.5512 26 6 0.8406 0.8081 -5.0352 27 6 1.8861 1.9065 -5.2383 28 6 1.2089 3.2005 -5.4225 29 7 0.6869 4.1995 -5.5631 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7327 -2.6613 0.4096 34 1 2.5534 -3.8265 2.4159 35 1 3.3147 -2.5336 4.3674 36 1 4.2818 0.3005 4.5147 37 1 2.4411 1.0988 2.2919 38 1 3.9193 0.2044 -1.2299 39 1 3.8070 -1.2915 -0.2718 40 1 3.8165 -1.3721 -2.0499 41 1 2.0520 0.9346 -2.5280 42 1 0.4723 0.1324 -2.3564 43 1 1.9777 -0.6892 -6.8873 44 1 2.7125 -1.9063 -5.8162 45 1 1.8104 -3.8067 -8.8395 46 1 0.1917 0.7578 -5.9096 47 1 0.2431 1.0340 -4.1519 48 1 2.5349 1.9568 -4.3639 49 1 2.4835 1.6806 -6.1216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109782293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:57 Heat of formation + Delta-G solvation = -9.504457 kcal Electronic energy + Delta-G solvation = -30181.163383 eV Core-core repulsion = 26109.215937 eV Total energy + Delta-G solvation = -4071.947446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.30998 -39.44095 -37.90900 -36.89398 -36.20207 -35.18297 -32.93873 -32.27583 -30.85653 -30.16166 -29.66369 -28.57867 -26.66846 -24.72267 -24.04652 -23.47304 -22.77738 -22.15401 -20.35926 -18.56598 -18.14571 -17.62510 -16.73346 -16.65426 -16.43587 -16.16730 -15.73213 -15.26595 -15.25151 -14.77821 -14.62790 -14.55571 -14.21381 -14.06671 -13.77043 -13.66114 -13.25323 -12.93533 -12.62464 -12.48846 -12.43747 -12.39824 -12.29583 -12.15123 -11.91437 -11.77584 -11.61675 -11.49469 -11.31061 -11.26284 -11.15827 -10.98258 -10.83191 -10.64999 -10.52719 -10.18643 -9.67703 -9.07619 -8.96830 -8.68028 -8.47859 -8.24742 -7.82388 -6.09244 -4.13443 1.09939 1.14749 2.69665 2.77718 3.27756 3.28252 3.36215 3.36880 3.40976 3.55918 3.88121 4.01844 4.25584 4.42481 4.48820 4.73150 4.91917 4.96205 5.01209 5.04828 5.09689 5.12436 5.25115 5.26823 5.27357 5.35223 5.36399 5.46529 5.52370 5.64834 5.67358 5.69924 5.77087 5.79907 5.84008 6.04239 6.11111 6.20528 6.27815 6.33737 6.45958 6.65971 6.83512 7.04921 7.09956 7.35432 7.41041 7.43752 7.54027 7.87442 8.17150 8.26506 8.85506 9.01293 9.52343 10.98924 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.002841 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.554215 B = 9852.295618 C =11739.535271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.120 3.880 3 H 0.048 0.952 4 C -0.059 4.059 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.148 4.148 8 C 0.096 3.904 9 O -0.502 6.502 10 C -0.142 4.142 11 N -0.513 5.513 12 C 0.017 3.983 13 C 0.029 3.971 14 C 0.510 3.490 15 O -0.513 6.513 16 N -0.599 5.599 17 C 0.246 3.754 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.118 3.882 27 C -0.050 4.050 28 C 0.217 3.783 29 N -0.445 5.445 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.387 0.613 37 H 0.124 0.876 38 H 0.016 0.984 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.034 0.966 44 H 0.046 0.954 45 H 0.263 0.737 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 7.974 19.002 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.066 0.934 4 C -0.059 4.059 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.167 4.167 8 C 0.052 3.948 9 O -0.311 6.311 10 C -0.161 4.161 11 N -0.238 5.238 12 C -0.130 4.130 13 C -0.102 4.102 14 C 0.296 3.704 15 O -0.388 6.388 16 N -0.332 5.332 17 C 0.127 3.873 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.009 4.009 27 C -0.092 4.092 28 C -0.101 4.101 29 N -0.122 5.122 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.243 0.757 37 H 0.142 0.858 38 H 0.034 0.966 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.394 8.254 18.872 20.737 hybrid contribution 0.268 -0.085 -0.348 0.448 sum 2.662 8.169 18.524 20.420 Atomic orbital electron populations 1.21925 0.93157 1.03415 1.01798 1.20571 0.95915 0.94607 0.87737 0.93427 1.19595 0.98066 0.93989 0.94267 1.21250 0.97903 0.93957 0.98277 1.21118 0.98457 1.00139 0.92845 1.21418 1.02626 0.93325 0.99290 1.18373 1.00041 0.89703 0.86653 1.84828 1.30332 1.74224 1.41762 1.21246 1.02090 1.00179 0.92564 1.61658 1.11550 1.50878 0.99685 1.22614 0.86094 0.99792 1.04523 1.22222 1.02415 0.95558 0.90019 1.20129 0.79774 0.86927 0.83609 1.90656 1.41135 1.22404 1.84630 1.48220 1.58253 1.18599 1.08131 1.19331 0.97645 0.89370 0.80920 1.21452 1.02717 1.19250 1.13036 0.92309 1.24912 0.96126 0.97073 0.95900 1.69928 1.28118 1.37277 1.18025 0.86471 0.82398 0.80842 0.77888 1.19764 1.21050 1.20908 1.21286 0.93336 0.82467 1.03766 1.19912 0.98755 0.84676 1.05859 1.29112 0.93619 0.94539 0.92877 1.81208 1.09404 1.12285 1.09340 0.91105 0.92040 0.91895 0.84233 0.85537 0.85787 0.75715 0.85808 0.96563 0.91448 0.88712 0.92596 0.87878 0.94828 0.93598 0.92759 0.88714 0.90835 0.87798 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.97 37.16 0.33 -1.07 16 2 C 0.12 1.25 2.28 -68.86 -0.16 1.09 16 3 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 4 C -0.06 -0.62 3.71 -104.65 -0.39 -1.01 16 5 C -0.10 -1.07 8.10 -39.57 -0.32 -1.39 16 6 C -0.11 -1.06 10.04 -39.61 -0.40 -1.46 16 7 C -0.15 -1.41 9.99 -39.43 -0.39 -1.81 16 8 C 0.10 0.95 6.71 -39.21 -0.26 0.69 16 9 O -0.50 -4.36 13.50 -19.41 -0.26 -4.63 16 10 C -0.14 -1.41 9.61 -39.43 -0.38 -1.79 16 11 N -0.51 -6.55 3.71 -237.72 -0.88 -7.43 16 12 C 0.02 0.22 8.80 60.07 0.53 0.75 16 13 C 0.03 0.36 3.82 -4.97 -0.02 0.34 16 14 C 0.51 8.94 7.40 -10.98 -0.08 8.85 16 15 O -0.51 -11.31 13.89 5.56 0.08 -11.23 16 16 N -0.60 -10.49 2.46 -175.06 -0.43 -10.92 16 17 C 0.25 5.67 5.16 -5.19 -0.03 5.64 16 18 C -0.53 -13.80 9.39 -34.44 -0.32 -14.12 16 19 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 C 0.12 1.49 5.17 -4.05 -0.02 1.47 16 27 C -0.05 -0.50 6.03 -29.51 -0.18 -0.68 16 28 C 0.22 2.52 15.43 -20.76 -0.32 2.20 16 29 N -0.45 -6.36 18.54 42.15 0.78 -5.58 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.56 6.20 -51.93 -0.32 0.24 16 33 H 0.14 1.73 7.71 -52.49 -0.40 1.33 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.39 1.53 9.06 45.56 0.41 1.95 16 37 H 0.12 1.08 8.03 -52.49 -0.42 0.66 16 38 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.83 6.02 -51.93 -0.31 0.52 16 40 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 41 H 0.06 0.57 7.17 -51.93 -0.37 0.20 16 42 H 0.10 1.17 5.09 -51.93 -0.26 0.90 16 43 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 44 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 47 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 48 H 0.10 0.83 7.22 -51.93 -0.38 0.46 16 49 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -33.53 407.48 -7.78 -41.31 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.42 Total: 1.50 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.50 Total: -0.70 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.21 Total: -48.47 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.18 Total: -15.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.53 -7.78 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109782293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.804 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds