Wall clock time and date at job start Wed Apr 1 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 C 1.38282 * 119.97587 * 79.99852 * 4 2 1 6 6 C 1.38237 * 120.11560 * 179.97438 * 5 4 2 7 7 C 1.38170 * 120.05842 * 0.02562 * 6 5 4 8 8 C 1.38721 * 119.93864 * 0.02562 * 7 6 5 9 9 O 1.35895 * 120.05188 * 180.02562 * 8 7 6 10 10 C 1.38122 * 119.96851 * 259.72929 * 4 2 1 11 11 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 12 12 C 1.46901 * 110.99788 * 183.95405 * 11 2 1 13 13 C 1.46901 * 110.99790 * 60.00351 * 11 2 1 14 14 C 1.50701 * 109.46921 * 189.99765 * 13 11 2 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 11 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 11 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47241 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47303 * 119.99759 * 22 20 18 25 25 H 1.48495 * 109.47340 * 239.99921 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 7.02105 * 83.10316 * 307.04885 * 2 1 3 30 30 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 32 32 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 33 33 H 1.08002 * 119.94299 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.97453 * 180.02562 * 6 5 4 35 35 H 1.07992 * 120.03030 * 180.02562 * 7 6 5 36 36 H 0.96701 * 113.99982 * 90.00738 * 9 8 7 37 37 H 1.07998 * 120.03358 * 359.97438 * 10 4 2 38 38 H 1.09001 * 109.47121 * 296.04690 * 12 11 2 39 39 H 1.09005 * 109.47342 * 56.04784 * 12 11 2 40 40 H 1.08999 * 109.46894 * 176.04703 * 12 11 2 41 41 H 1.09002 * 109.47401 * 69.99793 * 13 11 2 42 42 H 1.09001 * 109.46874 * 309.99805 * 13 11 2 43 43 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 44 44 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 45 45 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 47 47 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 48 48 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 49 49 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0665 -2.0924 1.2647 6 6 2.5273 -2.7471 2.3917 7 6 2.9545 -2.0217 3.4873 8 6 2.9202 -0.6353 3.4559 9 8 3.3403 0.0805 4.5320 10 6 2.4635 0.0195 2.3209 11 7 2.0197 -0.6925 -1.1994 12 6 3.4851 -0.7945 -1.1870 13 6 1.5488 -0.0263 -2.4211 14 6 1.8581 -0.8911 -3.6159 15 8 2.4156 -1.9575 -3.4646 16 7 1.5144 -0.4798 -4.8525 17 6 1.8146 -1.3207 -6.0139 18 6 0.6566 -2.2492 -6.2747 19 1 -0.2156 -2.2164 -5.6386 20 6 0.7106 -3.1404 -7.3252 21 7 1.7725 -3.1799 -8.1001 22 14 -0.7251 -4.2908 -7.6489 23 1 -1.7899 -4.0489 -6.6424 24 1 -1.2635 -4.0398 -9.0099 25 1 -0.2631 -5.6987 -7.5512 26 6 0.8406 0.8081 -5.0352 27 6 1.8861 1.9065 -5.2383 28 6 1.2089 3.2005 -5.4225 29 7 0.6869 4.1995 -5.5631 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7327 -2.6613 0.4096 34 1 2.5534 -3.8265 2.4159 35 1 3.3147 -2.5336 4.3674 36 1 4.2818 0.3005 4.5147 37 1 2.4411 1.0988 2.2919 38 1 3.9193 0.2044 -1.2299 39 1 3.8070 -1.2915 -0.2718 40 1 3.8165 -1.3721 -2.0499 41 1 2.0520 0.9346 -2.5280 42 1 0.4723 0.1324 -2.3564 43 1 1.9777 -0.6892 -6.8873 44 1 2.7125 -1.9063 -5.8162 45 1 1.8104 -3.8067 -8.8395 46 1 0.1917 0.7578 -5.9096 47 1 0.2431 1.0340 -4.1519 48 1 2.5349 1.9568 -4.3639 49 1 2.4835 1.6806 -6.1216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109782293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:56 Heat of formation + Delta-G solvation = -31.738121 kcal Electronic energy + Delta-G solvation = -30182.127507 eV Core-core repulsion = 26109.215937 eV Total energy + Delta-G solvation = -4072.911570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.21315 -40.57214 -38.79042 -37.93925 -37.06189 -36.51701 -34.83267 -33.17168 -32.10946 -30.91425 -30.57863 -29.83079 -28.15210 -25.70234 -25.26583 -24.76142 -23.59178 -23.30817 -21.18357 -19.85349 -18.96530 -18.71170 -18.30333 -17.84709 -17.45977 -17.06236 -16.95852 -16.44318 -16.14011 -15.97409 -15.69497 -15.58740 -15.36542 -15.19114 -14.81514 -14.47033 -14.37548 -14.20533 -13.97051 -13.57351 -13.49740 -13.44899 -13.19451 -13.15875 -12.98890 -12.97901 -12.78854 -12.67385 -12.51693 -12.43188 -12.34436 -12.18644 -12.14673 -12.05481 -11.78011 -11.59123 -11.25446 -10.56499 -10.41103 -9.77543 -9.44023 -9.41997 -9.14060 -8.15300 -6.26759 0.35059 0.40749 1.40131 1.43240 1.53305 1.71506 1.85583 1.97750 2.25680 2.45377 2.70888 2.98395 3.15903 3.21650 3.34830 3.72856 3.83792 4.01291 4.06552 4.14329 4.23917 4.30084 4.32630 4.36538 4.38991 4.47984 4.58895 4.63562 4.68336 4.70409 4.85943 4.86815 4.97019 5.03370 5.08089 5.10698 5.15504 5.23833 5.36651 5.38588 5.47043 5.55574 5.66257 5.66713 5.91576 5.94496 6.06555 6.17311 6.22248 6.62156 6.81663 6.88789 6.89576 7.39315 7.63742 8.91340 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.002841 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.554215 B = 9852.295618 C =11739.535271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.124 3.876 3 H 0.068 0.932 4 C -0.063 4.063 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.154 4.154 8 C 0.096 3.904 9 O -0.510 6.510 10 C -0.145 4.145 11 N -0.534 5.534 12 C 0.027 3.973 13 C 0.040 3.960 14 C 0.504 3.496 15 O -0.568 6.568 16 N -0.601 5.601 17 C 0.262 3.738 18 C -0.534 4.534 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.955 3.045 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.286 1.286 26 C 0.114 3.886 27 C -0.038 4.038 28 C 0.246 3.754 29 N -0.489 5.489 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.409 0.591 37 H 0.139 0.861 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.033 0.967 44 H 0.003 0.997 45 H 0.264 0.736 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.135 0.865 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 9.900 20.803 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.086 0.914 4 C -0.063 4.063 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.172 4.172 8 C 0.052 3.948 9 O -0.323 6.323 10 C -0.164 4.164 11 N -0.259 5.259 12 C -0.121 4.121 13 C -0.090 4.090 14 C 0.292 3.708 15 O -0.447 6.447 16 N -0.332 5.332 17 C 0.141 3.859 18 C -0.573 4.573 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.567 5.567 22 Si 0.781 3.219 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.212 1.212 26 C -0.011 4.011 27 C -0.079 4.079 28 C -0.071 4.071 29 N -0.167 5.167 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.152 0.848 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.680 10.233 20.689 23.143 hybrid contribution 0.538 -0.704 -0.833 1.216 sum 2.218 9.530 19.857 22.136 Atomic orbital electron populations 1.21928 0.92612 1.02625 1.02997 1.20613 0.96258 0.95124 0.86365 0.91440 1.19644 0.98229 0.93677 0.94761 1.21159 0.99313 0.94503 0.98170 1.21268 0.98171 1.00860 0.92702 1.21606 1.02478 0.93552 0.99588 1.18492 0.99608 0.89904 0.86808 1.84771 1.32305 1.73990 1.41254 1.21377 1.01825 1.00907 0.92263 1.61545 1.11430 1.52314 1.00582 1.22415 0.86550 1.00230 1.02869 1.22173 1.03898 0.95445 0.87495 1.21074 0.78349 0.86794 0.84584 1.90643 1.43445 1.25103 1.85460 1.48085 1.58590 1.19695 1.06859 1.18756 0.94886 0.89370 0.82919 1.21784 1.03230 1.19738 1.12539 0.92913 1.25698 0.98446 0.98683 0.96017 1.70028 1.29828 1.38217 1.18657 0.85545 0.79628 0.78552 0.78158 1.19214 1.19986 1.21240 1.21504 0.93907 0.80800 1.04903 1.19835 0.97944 0.82686 1.07402 1.29142 0.92443 0.94132 0.91430 1.81254 1.10698 1.13765 1.10968 0.92910 0.90722 0.90771 0.86365 0.84534 0.84307 0.73271 0.84297 0.94609 0.91463 0.92200 0.88932 0.85952 0.94941 0.97860 0.92685 0.89892 0.87608 0.84773 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.97 71.98 0.65 -1.78 16 2 C 0.12 2.27 2.28 44.17 0.10 2.37 16 3 H 0.07 1.00 8.00 -2.39 -0.02 0.98 16 4 C -0.06 -1.23 3.71 -19.88 -0.07 -1.30 16 5 C -0.11 -2.51 8.10 22.28 0.18 -2.33 16 6 C -0.11 -2.16 10.04 22.25 0.22 -1.94 16 7 C -0.15 -2.71 9.99 22.37 0.22 -2.48 16 8 C 0.10 1.70 6.71 22.51 0.15 1.85 16 9 O -0.51 -7.57 13.50 -92.37 -1.25 -8.82 16 10 C -0.14 -2.53 9.61 22.37 0.21 -2.32 16 11 N -0.53 -12.83 3.71 -906.01 -3.36 -16.19 16 12 C 0.03 0.68 8.80 127.69 1.12 1.80 16 13 C 0.04 0.90 3.82 85.56 0.33 1.23 16 14 C 0.50 17.44 7.40 87.66 0.65 18.09 16 15 O -0.57 -25.98 13.89 -3.03 -0.04 -26.03 16 16 N -0.60 -20.71 2.46 -826.16 -2.03 -22.74 16 17 C 0.26 12.40 5.16 85.64 0.44 12.84 16 18 C -0.53 -28.55 9.39 25.60 0.24 -28.31 16 19 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 20 C 0.01 0.57 5.46 84.65 0.46 1.03 16 21 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 22 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 C 0.11 2.62 5.17 86.38 0.45 3.06 16 27 C -0.04 -0.63 6.03 28.79 0.17 -0.46 16 28 C 0.25 5.05 15.43 89.45 1.38 6.43 16 29 N -0.49 -13.01 18.54 20.01 0.37 -12.64 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.06 6.20 -2.39 -0.01 1.04 16 33 H 0.12 3.10 7.71 -2.91 -0.02 3.08 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.41 2.13 9.06 -74.06 -0.67 1.46 16 37 H 0.14 1.96 8.03 -2.91 -0.02 1.93 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 1.64 6.02 -2.38 -0.01 1.63 16 40 H 0.06 1.94 5.88 -2.39 -0.01 1.93 16 41 H 0.09 1.44 7.17 -2.39 -0.02 1.42 16 42 H 0.12 2.31 5.09 -2.39 -0.01 2.30 16 43 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 44 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 45 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.08 2.15 8.07 -2.38 -0.02 2.13 16 47 H 0.11 1.79 6.44 -2.39 -0.02 1.77 16 48 H 0.13 1.55 7.22 -2.39 -0.02 1.54 16 49 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.02 407.48 3.22 -72.80 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.31 Total: 13.46 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.91 Total: 7.79 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -4.73 Total: -104.89 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.29 Total: -34.85 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -76.02 3.22 -72.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109782293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.057 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds