Wall clock time and date at job start Wed Apr 1 2020 03:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 117.00524 * 2 1 4 4 C 1.38755 * 120.05048 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94214 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05507 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.11376 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05494 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.03021 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47583 * 212.84313 * 9 8 7 11 11 C 1.53005 * 109.47164 * 92.84199 * 9 8 7 12 12 N 1.46504 * 109.47102 * 332.84600 * 9 8 7 13 13 C 1.34778 * 119.99808 * 209.40286 * 12 9 8 14 14 O 1.21281 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.50701 * 119.99745 * 179.97438 * 13 12 9 16 16 N 1.46906 * 109.46816 * 179.97438 * 15 13 12 17 17 C 1.46902 * 110.99873 * 190.00527 * 16 15 13 18 18 C 1.50692 * 109.47289 * 165.02692 * 17 16 15 19 19 H 1.08002 * 120.00210 * 4.88309 * 18 17 16 20 20 C 1.37877 * 120.00258 * 184.89382 * 18 17 16 21 21 N 1.31517 * 120.00006 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00188 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47349 * 59.99720 * 22 20 18 24 24 H 1.48501 * 109.47370 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47224 * 299.99794 * 22 20 18 26 26 C 1.46901 * 110.99948 * 66.05062 * 16 15 13 27 27 C 1.53001 * 109.47014 * 64.86262 * 26 16 15 28 28 C 1.47200 * 109.47046 * 185.33149 * 27 26 16 29 29 N 7.99777 * 120.96033 * 256.53781 * 2 1 3 30 30 H 1.08999 * 109.47268 * 299.99563 * 1 2 3 31 31 H 1.09003 * 109.47100 * 59.99860 * 1 2 3 32 32 H 1.09000 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.02882 * 0.04601 * 4 3 2 34 34 H 1.07996 * 119.97107 * 179.72658 * 5 4 3 35 35 H 1.08001 * 119.94427 * 179.97438 * 6 5 4 36 36 H 1.08001 * 119.97165 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.46801 * 299.99920 * 11 9 8 38 38 H 1.09005 * 109.47098 * 60.00024 * 11 9 8 39 39 H 1.08994 * 109.47355 * 180.02562 * 11 9 8 40 40 H 0.96992 * 120.00020 * 29.39679 * 12 9 8 41 41 H 1.08996 * 109.47489 * 300.00485 * 15 13 12 42 42 H 1.08999 * 109.46741 * 60.00510 * 15 13 12 43 43 H 1.09004 * 109.46727 * 285.02838 * 17 16 15 44 44 H 1.09005 * 109.47126 * 45.02290 * 17 16 15 45 45 H 0.97000 * 120.00120 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.46813 * 184.85762 * 26 16 15 47 47 H 1.08994 * 109.47087 * 304.86188 * 26 16 15 48 48 H 1.09006 * 109.47317 * 305.33404 * 27 26 16 49 49 H 1.09001 * 109.47365 * 65.33238 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5169 -0.0011 8 6 3.4312 1.2847 -0.0005 9 6 4.2537 0.0220 -0.0005 10 1 3.7284 -0.7539 -0.5575 11 6 4.4727 -0.4440 1.4403 12 7 5.5498 0.2835 -0.6315 13 6 6.1972 -0.7070 -1.2766 14 8 5.7067 -1.8147 -1.3352 15 6 7.5302 -0.4379 -1.9261 16 7 8.0246 -1.6688 -2.5575 17 6 9.4188 -1.5134 -2.9935 18 6 10.0059 -2.8689 -3.2915 19 1 9.3823 -3.7495 -3.2456 20 6 11.3394 -2.9850 -3.6224 21 7 12.0988 -1.9127 -3.6785 22 14 12.0673 -4.6653 -3.9911 23 1 11.3569 -5.2699 -5.1466 24 1 13.5086 -4.5196 -4.3179 25 1 11.9151 -5.5424 -2.8024 26 6 7.1636 -2.0676 -3.6790 27 6 7.2375 -1.0083 -4.7804 28 6 6.2795 -1.3419 -5.8471 29 7 5.5434 -1.5966 -6.6698 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2129 2.3203 0.0017 34 1 1.3341 4.5113 -0.0040 35 1 3.7923 4.6379 -0.0014 36 1 5.1345 2.5750 -0.0011 37 1 4.9981 0.3319 1.9972 38 1 3.5083 -0.6386 1.9098 39 1 5.0679 -1.3571 1.4403 40 1 5.9419 1.1694 -0.5850 41 1 7.4157 0.3383 -2.6826 42 1 8.2422 -0.1065 -1.1703 43 1 9.4519 -0.8975 -3.8922 44 1 9.9954 -1.0335 -2.2027 45 1 13.0368 -1.9943 -3.9117 46 1 7.5014 -3.0259 -4.0734 47 1 6.1345 -2.1599 -3.3320 48 1 6.9908 -0.0320 -4.3629 49 1 8.2461 -0.9826 -5.1929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122037750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:50 Heat of formation + Delta-G solvation = -6.000788 kcal Electronic energy + Delta-G solvation = -30003.302955 eV Core-core repulsion = 25931.507440 eV Total energy + Delta-G solvation = -4071.795515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78164 -39.59583 -37.90970 -37.26880 -35.94575 -35.28917 -32.63803 -31.96225 -30.56506 -30.49285 -29.48610 -28.02069 -27.58967 -25.69188 -24.07244 -23.52186 -22.59646 -21.40765 -20.26494 -19.78891 -18.42422 -17.54088 -16.93950 -16.66190 -16.19100 -16.07443 -16.01467 -15.51302 -15.18752 -14.85608 -14.64775 -14.49065 -14.21094 -14.01458 -13.81797 -13.56020 -13.47369 -13.14879 -13.11856 -12.60056 -12.53164 -12.33417 -12.08878 -12.03100 -11.98021 -11.90103 -11.54033 -11.45849 -11.42529 -11.22143 -11.08786 -10.88822 -10.78913 -10.63033 -10.15856 -9.98999 -9.50585 -9.27724 -9.11234 -8.96742 -8.45618 -8.44921 -7.35551 -6.06186 -4.06608 0.95871 1.10910 2.94379 2.98206 3.13010 3.16360 3.20952 3.35503 3.39024 3.43148 3.44968 4.32394 4.34431 4.44535 4.47040 4.64247 4.74718 4.80855 4.92994 4.96220 5.03813 5.11645 5.16135 5.22181 5.28581 5.30787 5.35427 5.41741 5.54706 5.57773 5.71461 5.72900 5.79943 5.82408 5.95963 5.98870 6.11710 6.17954 6.19222 6.34183 6.41572 6.60789 6.76563 7.05011 7.09986 7.17504 7.59110 7.77298 7.88745 8.00316 8.08621 8.42870 8.55687 9.00873 9.58083 11.04294 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002421 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.143736 B =11564.996096 C =12028.566907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.136 3.864 4 C -0.206 4.206 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.078 4.078 8 C -0.118 4.118 9 C 0.192 3.808 10 H 0.103 0.897 11 C -0.153 4.153 12 N -0.737 5.737 13 C 0.515 3.485 14 O -0.515 6.515 15 C 0.029 3.971 16 N -0.508 5.508 17 C 0.186 3.814 18 C -0.506 4.506 19 H 0.065 0.935 20 C 0.058 3.942 21 N -0.900 5.900 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.276 1.276 26 C 0.067 3.933 27 C -0.076 4.076 28 C 0.226 3.774 29 N -0.461 5.461 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.395 0.605 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.001 0.999 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.939 13.925 10.871 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.090 3.910 4 C -0.225 4.225 5 C -0.102 4.102 6 C -0.171 4.171 7 C -0.096 4.096 8 C -0.119 4.119 9 C 0.087 3.913 10 H 0.121 0.879 11 C -0.212 4.212 12 N -0.392 5.392 13 C 0.301 3.699 14 O -0.388 6.388 15 C -0.103 4.103 16 N -0.230 5.230 17 C 0.062 3.938 18 C -0.544 4.544 19 H 0.083 0.917 20 C -0.144 4.144 21 N -0.539 5.539 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.201 1.201 26 C -0.064 4.064 27 C -0.118 4.118 28 C -0.092 4.092 29 N -0.139 5.139 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.018 0.982 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.113 0.887 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.108 12.175 9.920 26.310 hybrid contribution 0.781 0.689 -0.416 1.122 sum -20.328 12.864 9.503 25.865 Atomic orbital electron populations 1.23080 0.78305 1.04205 1.01206 1.86128 1.21370 1.26515 1.88335 1.18756 0.91448 0.84493 0.96266 1.21224 1.00033 0.92311 1.08920 1.20944 0.94746 0.96937 0.97544 1.21044 0.93900 0.98391 1.03725 1.20767 0.99891 0.91037 0.97944 1.19371 0.90733 0.95732 1.06082 1.19495 0.83156 0.93991 0.94653 0.87929 1.22113 1.02210 1.01873 0.94983 1.46256 1.21472 1.13885 1.57608 1.20960 0.86773 0.84356 0.77786 1.90666 1.67268 1.22570 1.58332 1.22066 0.93836 0.94702 0.99652 1.62135 1.04665 1.28237 1.27993 1.19929 0.81073 0.97814 0.94990 1.21089 0.94332 0.93201 1.45805 0.91702 1.24935 0.97012 0.96775 0.95647 1.69924 1.06730 1.28221 1.49036 0.86580 0.77785 0.84290 0.78917 1.20252 1.21453 1.20125 1.22233 0.98992 0.97403 0.87735 1.20286 0.96606 1.02554 0.92371 1.29136 0.93509 0.92745 0.93775 1.81000 1.11541 1.09647 1.11742 0.92658 0.92658 0.88035 0.85402 0.85812 0.85663 0.85340 0.92575 0.91768 0.91405 0.76932 0.92470 0.87989 0.98156 0.94608 0.92845 0.89174 0.89919 0.88654 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.18 9.59 -19.42 -0.19 -3.37 16 3 C 0.14 1.38 6.66 -39.22 -0.26 1.12 16 4 C -0.21 -1.69 9.04 -39.43 -0.36 -2.05 16 5 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 6 C -0.15 -1.14 10.04 -39.56 -0.40 -1.54 16 7 C -0.08 -0.65 9.24 -39.60 -0.37 -1.02 16 8 C -0.12 -1.21 5.06 -104.48 -0.53 -1.74 16 9 C 0.19 2.24 2.60 -69.08 -0.18 2.06 16 10 H 0.10 1.48 6.92 -51.93 -0.36 1.12 16 11 C -0.15 -1.68 9.50 37.16 0.35 -1.33 16 12 N -0.74 -8.40 4.95 -54.93 -0.27 -8.67 16 13 C 0.51 7.74 7.51 -10.98 -0.08 7.65 16 14 O -0.51 -9.78 13.92 5.56 0.08 -9.70 16 15 C 0.03 0.43 5.28 -4.97 -0.03 0.41 16 16 N -0.51 -9.84 4.40 -237.51 -1.05 -10.89 16 17 C 0.19 4.24 4.55 -4.98 -0.02 4.21 16 18 C -0.51 -13.25 8.67 -34.44 -0.30 -13.55 16 19 H 0.06 1.73 7.27 -52.49 -0.38 1.35 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -25.10 13.29 55.43 0.74 -24.36 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.07 1.21 4.79 -3.82 -0.02 1.19 16 27 C -0.08 -1.18 5.01 -29.52 -0.15 -1.33 16 28 C 0.23 3.82 15.42 -20.86 -0.32 3.50 16 29 N -0.46 -8.70 18.52 42.04 0.78 -7.92 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 34 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.82 6.16 -52.49 -0.32 0.50 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 3.35 6.35 -40.82 -0.26 3.09 16 41 H 0.06 0.72 6.07 -51.93 -0.32 0.40 16 42 H 0.10 1.42 7.87 -51.93 -0.41 1.01 16 43 H 0.00 0.02 5.87 -51.93 -0.30 -0.29 16 44 H 0.04 0.87 7.83 -51.93 -0.41 0.47 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.09 1.81 7.13 -51.93 -0.37 1.44 16 47 H 0.08 1.53 5.81 -51.93 -0.30 1.23 16 48 H 0.10 1.24 6.17 -51.93 -0.32 0.92 16 49 H 0.12 2.01 6.45 -51.93 -0.34 1.67 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -33.02 402.72 -7.90 -40.93 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.88 Total: 2.60 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.16 Total: -0.80 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.20 Total: -51.84 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.11 Total: -13.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.02 -7.90 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122037750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.926 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds