Wall clock time and date at job start Wed Apr 1 2020 03:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 117.00524 * 2 1 4 4 C 1.38755 * 120.05048 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94214 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05507 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.11376 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05494 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.03021 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47583 * 212.84313 * 9 8 7 11 11 C 1.53005 * 109.47164 * 92.84199 * 9 8 7 12 12 N 1.46504 * 109.47102 * 332.84600 * 9 8 7 13 13 C 1.34778 * 119.99808 * 209.40286 * 12 9 8 14 14 O 1.21281 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.50701 * 119.99745 * 179.97438 * 13 12 9 16 16 N 1.46906 * 109.46816 * 179.97438 * 15 13 12 17 17 C 1.46902 * 110.99873 * 190.00527 * 16 15 13 18 18 C 1.50692 * 109.47289 * 165.02692 * 17 16 15 19 19 H 1.08002 * 120.00210 * 4.88309 * 18 17 16 20 20 C 1.37877 * 120.00258 * 184.89382 * 18 17 16 21 21 N 1.31517 * 120.00006 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00188 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47349 * 59.99720 * 22 20 18 24 24 H 1.48501 * 109.47370 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47224 * 299.99794 * 22 20 18 26 26 C 1.46901 * 110.99948 * 66.05062 * 16 15 13 27 27 C 1.53001 * 109.47014 * 64.86262 * 26 16 15 28 28 C 1.47200 * 109.47046 * 185.33149 * 27 26 16 29 29 N 7.99777 * 120.96033 * 256.53781 * 2 1 3 30 30 H 1.08999 * 109.47268 * 299.99563 * 1 2 3 31 31 H 1.09003 * 109.47100 * 59.99860 * 1 2 3 32 32 H 1.09000 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.02882 * 0.04601 * 4 3 2 34 34 H 1.07996 * 119.97107 * 179.72658 * 5 4 3 35 35 H 1.08001 * 119.94427 * 179.97438 * 6 5 4 36 36 H 1.08001 * 119.97165 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.46801 * 299.99920 * 11 9 8 38 38 H 1.09005 * 109.47098 * 60.00024 * 11 9 8 39 39 H 1.08994 * 109.47355 * 180.02562 * 11 9 8 40 40 H 0.96992 * 120.00020 * 29.39679 * 12 9 8 41 41 H 1.08996 * 109.47489 * 300.00485 * 15 13 12 42 42 H 1.08999 * 109.46741 * 60.00510 * 15 13 12 43 43 H 1.09004 * 109.46727 * 285.02838 * 17 16 15 44 44 H 1.09005 * 109.47126 * 45.02290 * 17 16 15 45 45 H 0.97000 * 120.00120 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.46813 * 184.85762 * 26 16 15 47 47 H 1.08994 * 109.47087 * 304.86188 * 26 16 15 48 48 H 1.09006 * 109.47317 * 305.33404 * 27 26 16 49 49 H 1.09001 * 109.47365 * 65.33238 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5169 -0.0011 8 6 3.4312 1.2847 -0.0005 9 6 4.2537 0.0220 -0.0005 10 1 3.7284 -0.7539 -0.5575 11 6 4.4727 -0.4440 1.4403 12 7 5.5498 0.2835 -0.6315 13 6 6.1972 -0.7070 -1.2766 14 8 5.7067 -1.8147 -1.3352 15 6 7.5302 -0.4379 -1.9261 16 7 8.0246 -1.6688 -2.5575 17 6 9.4188 -1.5134 -2.9935 18 6 10.0059 -2.8689 -3.2915 19 1 9.3823 -3.7495 -3.2456 20 6 11.3394 -2.9850 -3.6224 21 7 12.0988 -1.9127 -3.6785 22 14 12.0673 -4.6653 -3.9911 23 1 11.3569 -5.2699 -5.1466 24 1 13.5086 -4.5196 -4.3179 25 1 11.9151 -5.5424 -2.8024 26 6 7.1636 -2.0676 -3.6790 27 6 7.2375 -1.0083 -4.7804 28 6 6.2795 -1.3419 -5.8471 29 7 5.5434 -1.5966 -6.6698 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2129 2.3203 0.0017 34 1 1.3341 4.5113 -0.0040 35 1 3.7923 4.6379 -0.0014 36 1 5.1345 2.5750 -0.0011 37 1 4.9981 0.3319 1.9972 38 1 3.5083 -0.6386 1.9098 39 1 5.0679 -1.3571 1.4403 40 1 5.9419 1.1694 -0.5850 41 1 7.4157 0.3383 -2.6826 42 1 8.2422 -0.1065 -1.1703 43 1 9.4519 -0.8975 -3.8922 44 1 9.9954 -1.0335 -2.2027 45 1 13.0368 -1.9943 -3.9117 46 1 7.5014 -3.0259 -4.0734 47 1 6.1345 -2.1599 -3.3320 48 1 6.9908 -0.0320 -4.3629 49 1 8.2461 -0.9826 -5.1929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122037750.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:48 Heat of formation + Delta-G solvation = -27.557949 kcal Electronic energy + Delta-G solvation = -30004.237743 eV Core-core repulsion = 25931.507440 eV Total energy + Delta-G solvation = -4072.730304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.53216 -40.71201 -38.92399 -38.31443 -37.34358 -36.36418 -34.61828 -32.94857 -31.84566 -31.15562 -30.38773 -29.55061 -28.12475 -27.18570 -25.36622 -24.76524 -23.29986 -22.44089 -21.41783 -21.02443 -19.20358 -18.87821 -18.22414 -17.86964 -17.44600 -17.05035 -16.74024 -16.66931 -16.35351 -16.15063 -15.76482 -15.51210 -15.38598 -15.14617 -14.95565 -14.61405 -14.48939 -14.39789 -14.19288 -14.02196 -13.52745 -13.45175 -13.26368 -13.17524 -13.00841 -12.93302 -12.79145 -12.68352 -12.66620 -12.54469 -12.43221 -12.10034 -11.99879 -11.88573 -11.61658 -11.54582 -11.34441 -10.58373 -10.48949 -10.09857 -9.80369 -9.09768 -8.86705 -8.10791 -6.15878 0.34218 0.49743 1.46991 1.47624 1.55077 1.73739 1.76925 1.79942 2.16036 2.39838 2.48677 2.81521 2.98412 3.23650 3.53012 3.60942 3.90636 3.96379 4.09323 4.14465 4.19384 4.24572 4.34797 4.35824 4.38765 4.42968 4.46418 4.54335 4.57314 4.68109 4.70623 4.73340 4.78513 4.88014 4.96755 5.04912 5.21112 5.25387 5.33752 5.39410 5.41805 5.44410 5.58225 5.69377 5.76792 5.86957 6.15162 6.37539 6.44780 6.55369 6.56979 6.78036 6.97910 7.42939 7.52106 8.98292 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002421 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.143736 B =11564.996096 C =12028.566907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.117 3.883 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.154 4.154 7 C -0.082 4.082 8 C -0.139 4.139 9 C 0.198 3.802 10 H 0.069 0.931 11 C -0.146 4.146 12 N -0.716 5.716 13 C 0.517 3.483 14 O -0.561 6.561 15 C 0.029 3.971 16 N -0.527 5.527 17 C 0.201 3.799 18 C -0.518 4.518 19 H 0.052 0.948 20 C 0.014 3.986 21 N -0.925 5.925 22 Si 0.948 3.052 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.276 1.276 26 C 0.074 3.926 27 C -0.062 4.062 28 C 0.244 3.756 29 N -0.493 5.493 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.412 0.588 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.004 0.996 44 H 0.020 0.980 45 H 0.263 0.737 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.130 0.870 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.602 16.404 11.358 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.071 3.929 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.172 4.172 7 C -0.100 4.100 8 C -0.140 4.140 9 C 0.093 3.907 10 H 0.087 0.913 11 C -0.204 4.204 12 N -0.372 5.372 13 C 0.304 3.696 14 O -0.439 6.439 15 C -0.102 4.102 16 N -0.250 5.250 17 C 0.076 3.924 18 C -0.556 4.556 19 H 0.070 0.930 20 C -0.185 4.185 21 N -0.566 5.566 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.202 1.202 26 C -0.056 4.056 27 C -0.104 4.104 28 C -0.073 4.073 29 N -0.172 5.172 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.251 0.749 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.022 0.978 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.148 0.852 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.791 14.698 10.423 28.276 hybrid contribution 0.876 -0.029 -0.498 1.008 sum -20.915 14.669 9.926 27.407 Atomic orbital electron populations 1.23299 0.76663 1.05212 1.02282 1.86092 1.23287 1.27241 1.88572 1.19023 0.91760 0.85070 0.97063 1.21486 1.00993 0.92029 1.08503 1.21338 0.95179 0.97523 0.96149 1.21386 0.94107 0.99055 1.02693 1.21010 1.00953 0.90585 0.97433 1.19329 0.90871 0.95496 1.08297 1.19324 0.82874 0.94330 0.94201 0.91319 1.22031 1.02153 1.01250 0.95004 1.46038 1.21089 1.13958 1.56101 1.20964 0.86737 0.84187 0.77715 1.90659 1.68381 1.24549 1.60275 1.22150 0.93906 0.93565 1.00575 1.61895 1.03377 1.31213 1.28502 1.19598 0.82659 0.95770 0.94396 1.21414 0.94502 0.94496 1.45220 0.93006 1.25564 0.97529 0.99537 0.95821 1.69996 1.06903 1.29605 1.50075 0.85762 0.77242 0.80947 0.78589 1.20036 1.20926 1.20179 1.22016 0.98241 0.97104 0.88237 1.20206 0.95952 1.03188 0.91031 1.29274 0.92922 0.91762 0.93334 1.81017 1.12672 1.10693 1.12811 0.91154 0.91902 0.87215 0.83693 0.83279 0.83243 0.83576 0.90892 0.91497 0.93692 0.74873 0.89103 0.86636 0.97822 0.96228 0.92828 0.91865 0.90250 0.85224 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.02 9.59 -92.40 -0.89 -7.91 16 3 C 0.12 2.27 6.66 22.51 0.15 2.42 16 4 C -0.21 -3.06 9.04 22.37 0.20 -2.86 16 5 C -0.08 -0.99 10.04 22.25 0.22 -0.76 16 6 C -0.15 -1.81 10.04 22.28 0.22 -1.59 16 7 C -0.08 -1.17 9.24 22.25 0.21 -0.96 16 8 C -0.14 -2.70 5.06 -19.77 -0.10 -2.80 16 9 C 0.20 4.61 2.60 44.24 0.12 4.73 16 10 H 0.07 2.10 6.92 -2.39 -0.02 2.08 16 11 C -0.15 -3.22 9.50 71.98 0.68 -2.54 16 12 N -0.72 -15.47 4.95 -446.09 -2.21 -17.68 16 13 C 0.52 15.19 7.51 87.66 0.66 15.85 16 14 O -0.56 -21.79 13.92 -3.03 -0.04 -21.83 16 15 C 0.03 0.81 5.28 85.56 0.45 1.26 16 16 N -0.53 -20.23 4.40 -905.36 -3.99 -24.22 16 17 C 0.20 9.09 4.55 85.55 0.39 9.47 16 18 C -0.52 -27.34 8.67 25.60 0.22 -27.12 16 19 H 0.05 2.82 7.27 -2.91 -0.02 2.80 16 20 C 0.01 0.76 5.46 84.65 0.46 1.22 16 21 N -0.93 -51.47 13.29 21.45 0.28 -51.18 16 22 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 C 0.07 2.69 4.79 86.30 0.41 3.11 16 27 C -0.06 -1.84 5.01 28.79 0.14 -1.69 16 28 C 0.24 8.04 15.42 89.48 1.38 9.42 16 29 N -0.49 -18.35 18.52 19.97 0.37 -17.98 16 30 H 0.07 0.59 7.66 -2.39 -0.02 0.58 16 31 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.15 1.46 6.30 -2.91 -0.02 1.44 16 34 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.15 1.40 6.16 -2.91 -0.02 1.38 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.41 5.94 6.35 -92.71 -0.59 5.36 16 41 H 0.09 1.96 6.07 -2.39 -0.01 1.95 16 42 H 0.12 2.97 7.87 -2.39 -0.02 2.95 16 43 H 0.00 0.19 5.87 -2.39 -0.01 0.17 16 44 H 0.02 0.95 7.83 -2.38 -0.02 0.93 16 45 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 46 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 47 H 0.08 2.98 5.81 -2.39 -0.01 2.96 16 48 H 0.13 2.95 6.17 -2.38 -0.01 2.94 16 49 H 0.12 3.70 6.45 -2.39 -0.02 3.68 16 Total: -1.00 -72.84 402.72 2.89 -69.95 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.40 Total: 16.86 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.94 Total: 8.52 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -5.54 Total: -111.07 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.93 Total: -29.74 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.84 2.89 -69.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122037750.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.388 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds