Wall clock time and date at job start Wed Apr 1 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.38345 * 2 1 4 4 C 1.50248 * 109.30305 * 119.74131 * 2 1 3 5 5 O 1.21286 * 118.62685 * 317.30344 * 4 2 1 6 6 N 1.33714 * 122.75341 * 137.32864 * 4 2 1 7 7 C 1.46498 * 118.54189 * 178.31260 * 6 4 2 8 8 C 1.46013 * 122.92438 * 358.28859 * 6 4 2 9 9 C 1.52969 * 110.04498 * 18.16520 * 8 6 4 10 10 N 1.46902 * 109.38470 * 240.21116 * 2 1 3 11 11 C 1.46898 * 111.00136 * 66.28127 * 10 2 1 12 12 C 1.50704 * 109.46862 * 178.63631 * 11 10 2 13 13 O 1.21290 * 120.00254 * 6.79244 * 12 11 10 14 14 N 1.34770 * 119.99984 * 186.79736 * 12 11 10 15 15 C 1.46501 * 120.00288 * 176.68423 * 14 12 11 16 16 C 1.50700 * 109.46843 * 90.00005 * 15 14 12 17 17 H 1.08001 * 120.00335 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99802 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99828 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00246 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47132 * 269.99851 * 20 18 16 22 22 H 1.48498 * 109.47045 * 30.00265 * 20 18 16 23 23 H 1.48504 * 109.47007 * 149.99973 * 20 18 16 24 24 C 1.39931 * 120.00352 * 356.68892 * 14 12 11 25 25 C 1.38870 * 120.06698 * 262.42869 * 24 14 12 26 26 C 1.38112 * 119.92368 * 179.71722 * 25 24 14 27 27 C 1.38284 * 120.07577 * 0.52595 * 26 25 24 28 28 C 1.38281 * 120.13372 * 359.76963 * 27 26 25 29 29 C 1.38112 * 120.07415 * 359.95509 * 28 27 26 30 30 H 1.09005 * 109.47392 * 179.79088 * 1 2 3 31 31 H 1.09001 * 109.47351 * 299.79330 * 1 2 3 32 32 H 1.09005 * 109.47265 * 59.78984 * 1 2 3 33 33 H 1.08997 * 109.46912 * 359.97438 * 7 6 4 34 34 H 1.08999 * 109.47386 * 119.99690 * 7 6 4 35 35 H 1.09000 * 109.47283 * 240.00161 * 7 6 4 36 36 H 1.09000 * 109.37693 * 138.33751 * 8 6 4 37 37 H 1.08999 * 109.37685 * 258.10169 * 8 6 4 38 38 H 1.08997 * 109.60166 * 189.93410 * 9 8 6 39 39 H 1.09008 * 109.57730 * 69.49177 * 9 8 6 40 40 H 1.08994 * 109.47182 * 58.63975 * 11 10 2 41 41 H 1.08999 * 109.47413 * 298.63063 * 11 10 2 42 42 H 1.09003 * 109.47164 * 330.00523 * 15 14 12 43 43 H 1.08996 * 109.47682 * 209.99751 * 15 14 12 44 44 H 0.96991 * 119.99718 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03713 * 359.97251 * 25 24 14 46 46 H 1.08008 * 119.96247 * 180.25063 * 26 25 24 47 47 H 1.07991 * 119.93094 * 179.74186 * 27 26 25 48 48 H 1.08009 * 119.95940 * 179.97438 * 28 27 26 49 49 H 1.08000 * 120.03157 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8917 1.0282 0.0000 4 6 2.0266 -0.7035 1.2312 5 8 1.4803 -0.4770 2.2901 6 7 3.0461 -1.5684 1.2086 7 6 3.4787 -2.1736 2.4706 8 6 3.7471 -1.9369 -0.0181 9 6 3.4709 -0.9027 -1.1108 10 7 2.0175 -0.6884 -1.2026 11 6 1.6719 0.0635 -2.4163 12 6 2.2163 -0.6547 -3.6242 13 8 2.7228 -1.7498 -3.5015 14 7 2.1403 -0.0799 -4.8409 15 6 2.7339 -0.7449 -6.0035 16 6 1.7099 -1.6464 -6.6436 17 1 0.7162 -1.7167 -6.2264 18 6 2.0416 -2.3815 -7.7620 19 7 1.1477 -3.1680 -8.3209 20 14 3.7605 -2.2606 -8.4832 21 1 3.7982 -1.1721 -9.4927 22 1 4.7321 -1.9650 -7.3999 23 1 4.1174 -3.5486 -9.1304 24 6 1.4944 1.1520 -4.9937 25 6 0.1759 1.1973 -5.4273 26 6 -0.4605 2.4145 -5.5715 27 6 0.2172 3.5879 -5.2951 28 6 1.5321 3.5463 -4.8692 29 6 2.1724 2.3320 -4.7175 30 1 -0.3634 -1.0277 -0.0038 31 1 -0.3634 0.5106 0.8918 32 1 -0.3634 0.5171 -0.8881 33 1 2.8594 -1.7976 3.2850 34 1 3.3778 -3.2571 2.4075 35 1 4.5210 -1.9161 2.6586 36 1 4.8187 -1.9797 0.1767 37 1 3.4011 -2.9150 -0.3524 38 1 3.8473 -1.2700 -2.0655 39 1 3.9636 0.0362 -0.8580 40 1 2.1058 1.0618 -2.3611 41 1 0.5879 0.1424 -2.4985 42 1 3.5911 -1.3378 -5.6846 43 1 3.0588 0.0052 -6.7245 44 1 1.3810 -3.6848 -9.1078 45 1 -0.3525 0.2815 -5.6474 46 1 -1.4872 2.4503 -5.9047 47 1 -0.2814 4.5385 -5.4127 48 1 2.0588 4.4645 -4.6545 49 1 3.1992 2.3003 -4.3843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187014968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:51 Heat of formation + Delta-G solvation = -2.733408 kcal Electronic energy + Delta-G solvation = -31411.170326 eV Core-core repulsion = 27339.516495 eV Total energy + Delta-G solvation = -4071.653831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.88881 -39.97904 -38.47614 -37.00708 -35.73394 -34.97379 -32.67752 -31.35403 -30.78995 -30.33597 -29.64633 -28.00928 -27.11468 -26.14069 -23.20273 -22.95400 -22.59555 -22.39222 -21.70329 -19.14469 -18.73122 -17.73605 -17.03877 -16.86390 -16.47988 -16.08466 -15.94129 -15.55721 -15.45010 -15.08902 -14.59330 -14.33979 -14.27061 -14.13450 -13.81054 -13.46857 -13.25673 -13.16890 -12.96255 -12.61545 -12.55020 -12.50870 -12.33542 -12.13097 -11.89372 -11.80287 -11.60599 -11.51610 -11.47038 -11.26911 -10.97081 -10.96855 -10.62558 -10.19051 -9.87900 -9.59015 -9.31880 -8.85062 -8.80798 -8.65062 -8.61071 -8.41449 -7.99513 -6.14041 -4.13310 1.41344 1.54502 2.48538 2.86411 3.06270 3.21525 3.25232 3.32419 3.34037 3.85260 3.89290 4.32105 4.33986 4.66021 4.70615 4.95665 4.97711 5.04847 5.08017 5.09424 5.18397 5.21369 5.24088 5.27477 5.29029 5.36832 5.45802 5.57987 5.65558 5.71461 5.72748 5.73399 5.83511 5.90072 5.91669 6.12027 6.18381 6.23845 6.45348 6.55072 6.64681 6.68803 6.77472 6.78533 6.85667 6.99249 7.22570 7.26938 7.51727 8.02384 8.10317 8.38187 8.74648 8.88457 9.45053 10.99054 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.003800 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.202961 B = 7366.917870 C = 9199.995040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.074 0.926 4 C 0.529 3.471 5 O -0.553 6.553 6 N -0.606 5.606 7 C 0.072 3.928 8 C 0.122 3.878 9 C 0.019 3.981 10 N -0.508 5.508 11 C 0.036 3.964 12 C 0.518 3.482 13 O -0.509 6.509 14 N -0.557 5.557 15 C 0.221 3.779 16 C -0.528 4.528 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.872 3.128 21 H -0.275 1.275 22 H -0.264 1.264 23 H -0.283 1.283 24 C 0.145 3.855 25 C -0.099 4.099 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.127 4.127 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.045 0.955 43 H 0.027 0.973 44 H 0.265 0.735 45 H 0.135 0.865 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 11.807 14.010 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.091 0.909 4 C 0.317 3.683 5 O -0.431 6.431 6 N -0.339 5.339 7 C -0.070 4.070 8 C 0.000 4.000 9 C -0.109 4.109 10 N -0.235 5.235 11 C -0.094 4.094 12 C 0.305 3.695 13 O -0.384 6.384 14 N -0.287 5.287 15 C 0.102 3.898 16 C -0.566 4.566 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.699 3.301 21 H -0.201 1.201 22 H -0.189 1.189 23 H -0.209 1.209 24 C 0.054 3.946 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.147 4.147 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.153 0.847 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.842 10.682 14.432 18.178 hybrid contribution 1.259 0.714 -0.799 1.653 sum 4.101 11.396 13.633 18.235 Atomic orbital electron populations 1.21702 0.91079 1.03674 1.02630 1.21761 0.98437 0.96336 0.87750 0.90857 1.19985 0.79134 0.78925 0.90263 1.90673 1.56812 1.64359 1.31210 1.47392 1.33607 1.43717 1.09147 1.21737 1.00163 0.98194 0.86938 1.21529 0.96324 0.99651 0.82530 1.22925 0.87894 0.97741 1.02292 1.62232 1.14013 1.47035 1.00180 1.22097 1.03131 0.95330 0.88863 1.20105 0.79829 0.86035 0.83533 1.90622 1.44094 1.19131 1.84601 1.45560 1.55371 1.18751 1.08998 1.19774 0.95133 0.92736 0.82193 1.21244 0.99216 1.24600 1.11563 0.90551 1.24822 0.96919 0.94633 0.96399 1.69885 1.34138 1.27529 1.21673 0.86905 0.85416 0.77961 0.79800 1.20107 1.18915 1.20862 1.17697 0.91593 0.85447 0.99855 1.21663 0.94154 0.98912 0.97081 1.21105 1.00091 0.92058 0.99977 1.21134 0.94878 0.98140 1.00131 1.20941 0.95064 0.97058 1.00611 1.21365 0.99755 0.91933 1.01605 0.91261 0.90824 0.91452 0.89285 0.92071 0.92315 0.90347 0.90129 0.85287 0.94613 0.92036 0.87305 0.93732 0.95534 0.92495 0.84711 0.85856 0.86276 0.86154 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.84 37.16 0.33 -1.24 16 2 C 0.07 0.86 2.50 -69.08 -0.17 0.69 16 3 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 4 C 0.53 7.42 7.13 -11.68 -0.08 7.34 16 5 O -0.55 -8.99 15.30 5.55 0.08 -8.91 16 6 N -0.61 -7.44 3.23 -182.49 -0.59 -8.03 16 7 C 0.07 0.71 10.55 59.85 0.63 1.34 16 8 C 0.12 1.40 6.64 -4.32 -0.03 1.37 16 9 C 0.02 0.25 5.14 -3.68 -0.02 0.23 16 10 N -0.51 -7.09 4.35 -229.51 -1.00 -8.09 16 11 C 0.04 0.52 4.12 -4.97 -0.02 0.49 16 12 C 0.52 9.63 7.10 -10.99 -0.08 9.55 16 13 O -0.51 -11.14 13.53 5.55 0.08 -11.06 16 14 N -0.56 -10.78 2.48 -114.74 -0.28 -11.06 16 15 C 0.22 5.12 4.20 -5.19 -0.02 5.10 16 16 C -0.53 -14.47 9.94 -34.44 -0.34 -14.81 16 17 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 18 C 0.08 2.12 5.47 -17.81 -0.10 2.02 16 19 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 20 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.14 2.36 4.04 -83.69 -0.34 2.02 16 25 C -0.10 -1.57 9.97 -39.39 -0.39 -1.96 16 26 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 27 C -0.12 -1.38 10.04 -39.55 -0.40 -1.77 16 28 C -0.12 -1.32 10.04 -39.61 -0.40 -1.72 16 29 C -0.13 -1.69 9.16 -39.40 -0.36 -2.05 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.84 7.80 -51.93 -0.41 0.43 16 32 H 0.07 0.70 6.58 -51.93 -0.34 0.36 16 33 H 0.09 0.99 6.67 -51.93 -0.35 0.64 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.13 1.96 5.07 -51.93 -0.26 1.70 16 39 H 0.04 0.41 8.08 -51.92 -0.42 -0.01 16 40 H 0.06 0.76 7.25 -51.93 -0.38 0.38 16 41 H 0.11 1.49 6.54 -51.93 -0.34 1.15 16 42 H 0.04 1.09 6.52 -51.93 -0.34 0.75 16 43 H 0.03 0.60 7.48 -51.93 -0.39 0.21 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.13 2.42 7.83 -52.49 -0.41 2.01 16 46 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 49 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -33.50 392.98 -9.31 -42.80 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.43 Total: 3.52 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.19 Total: 4.77 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -1.10 Total: -53.23 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.16 Total: -19.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.50 -9.31 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187014968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.068 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds