Wall clock time and date at job start Wed Apr 1 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.38345 * 2 1 4 4 C 1.50248 * 109.30305 * 119.74131 * 2 1 3 5 5 O 1.21286 * 118.62685 * 317.30344 * 4 2 1 6 6 N 1.33714 * 122.75341 * 137.32864 * 4 2 1 7 7 C 1.46498 * 118.54189 * 178.31260 * 6 4 2 8 8 C 1.46013 * 122.92438 * 358.28859 * 6 4 2 9 9 C 1.52969 * 110.04498 * 18.16520 * 8 6 4 10 10 N 1.46902 * 109.38470 * 240.21116 * 2 1 3 11 11 C 1.46898 * 111.00136 * 66.28127 * 10 2 1 12 12 C 1.50704 * 109.46862 * 178.63631 * 11 10 2 13 13 O 1.21290 * 120.00254 * 6.79244 * 12 11 10 14 14 N 1.34770 * 119.99984 * 186.79736 * 12 11 10 15 15 C 1.46501 * 120.00288 * 176.68423 * 14 12 11 16 16 C 1.50700 * 109.46843 * 90.00005 * 15 14 12 17 17 H 1.08001 * 120.00335 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99802 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99828 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00246 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47132 * 269.99851 * 20 18 16 22 22 H 1.48498 * 109.47045 * 30.00265 * 20 18 16 23 23 H 1.48504 * 109.47007 * 149.99973 * 20 18 16 24 24 C 1.39931 * 120.00352 * 356.68892 * 14 12 11 25 25 C 1.38870 * 120.06698 * 262.42869 * 24 14 12 26 26 C 1.38112 * 119.92368 * 179.71722 * 25 24 14 27 27 C 1.38284 * 120.07577 * 0.52595 * 26 25 24 28 28 C 1.38281 * 120.13372 * 359.76963 * 27 26 25 29 29 C 1.38112 * 120.07415 * 359.95509 * 28 27 26 30 30 H 1.09005 * 109.47392 * 179.79088 * 1 2 3 31 31 H 1.09001 * 109.47351 * 299.79330 * 1 2 3 32 32 H 1.09005 * 109.47265 * 59.78984 * 1 2 3 33 33 H 1.08997 * 109.46912 * 359.97438 * 7 6 4 34 34 H 1.08999 * 109.47386 * 119.99690 * 7 6 4 35 35 H 1.09000 * 109.47283 * 240.00161 * 7 6 4 36 36 H 1.09000 * 109.37693 * 138.33751 * 8 6 4 37 37 H 1.08999 * 109.37685 * 258.10169 * 8 6 4 38 38 H 1.08997 * 109.60166 * 189.93410 * 9 8 6 39 39 H 1.09008 * 109.57730 * 69.49177 * 9 8 6 40 40 H 1.08994 * 109.47182 * 58.63975 * 11 10 2 41 41 H 1.08999 * 109.47413 * 298.63063 * 11 10 2 42 42 H 1.09003 * 109.47164 * 330.00523 * 15 14 12 43 43 H 1.08996 * 109.47682 * 209.99751 * 15 14 12 44 44 H 0.96991 * 119.99718 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03713 * 359.97251 * 25 24 14 46 46 H 1.08008 * 119.96247 * 180.25063 * 26 25 24 47 47 H 1.07991 * 119.93094 * 179.74186 * 27 26 25 48 48 H 1.08009 * 119.95940 * 179.97438 * 28 27 26 49 49 H 1.08000 * 120.03157 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8917 1.0282 0.0000 4 6 2.0266 -0.7035 1.2312 5 8 1.4803 -0.4770 2.2901 6 7 3.0461 -1.5684 1.2086 7 6 3.4787 -2.1736 2.4706 8 6 3.7471 -1.9369 -0.0181 9 6 3.4709 -0.9027 -1.1108 10 7 2.0175 -0.6884 -1.2026 11 6 1.6719 0.0635 -2.4163 12 6 2.2163 -0.6547 -3.6242 13 8 2.7228 -1.7498 -3.5015 14 7 2.1403 -0.0799 -4.8409 15 6 2.7339 -0.7449 -6.0035 16 6 1.7099 -1.6464 -6.6436 17 1 0.7162 -1.7167 -6.2264 18 6 2.0416 -2.3815 -7.7620 19 7 1.1477 -3.1680 -8.3209 20 14 3.7605 -2.2606 -8.4832 21 1 3.7982 -1.1721 -9.4927 22 1 4.7321 -1.9650 -7.3999 23 1 4.1174 -3.5486 -9.1304 24 6 1.4944 1.1520 -4.9937 25 6 0.1759 1.1973 -5.4273 26 6 -0.4605 2.4145 -5.5715 27 6 0.2172 3.5879 -5.2951 28 6 1.5321 3.5463 -4.8692 29 6 2.1724 2.3320 -4.7175 30 1 -0.3634 -1.0277 -0.0038 31 1 -0.3634 0.5106 0.8918 32 1 -0.3634 0.5171 -0.8881 33 1 2.8594 -1.7976 3.2850 34 1 3.3778 -3.2571 2.4075 35 1 4.5210 -1.9161 2.6586 36 1 4.8187 -1.9797 0.1767 37 1 3.4011 -2.9150 -0.3524 38 1 3.8473 -1.2700 -2.0655 39 1 3.9636 0.0362 -0.8580 40 1 2.1058 1.0618 -2.3611 41 1 0.5879 0.1424 -2.4985 42 1 3.5911 -1.3378 -5.6846 43 1 3.0588 0.0052 -6.7245 44 1 1.3810 -3.6848 -9.1078 45 1 -0.3525 0.2815 -5.6474 46 1 -1.4872 2.4503 -5.9047 47 1 -0.2814 4.5385 -5.4127 48 1 2.0588 4.4645 -4.6545 49 1 3.1992 2.3003 -4.3843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187014968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:50 Heat of formation + Delta-G solvation = -25.263904 kcal Electronic energy + Delta-G solvation = -31412.147322 eV Core-core repulsion = 27339.516495 eV Total energy + Delta-G solvation = -4072.630827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00446 -41.22392 -39.63977 -38.17581 -36.74431 -36.43477 -34.72693 -32.40516 -31.83974 -31.58692 -30.88878 -29.48720 -28.07386 -27.36751 -24.62969 -24.00185 -23.87105 -23.43646 -23.02573 -20.43903 -19.74107 -19.10679 -18.87836 -18.02794 -17.61020 -17.30574 -17.00800 -16.90019 -16.64062 -16.22493 -15.93365 -15.68097 -15.43431 -15.31968 -15.01082 -14.61601 -14.55374 -14.24775 -14.23166 -14.05587 -13.73425 -13.64195 -13.50371 -13.40533 -13.15664 -12.98937 -12.76004 -12.60849 -12.56220 -12.53493 -12.43495 -12.20958 -12.05592 -11.94370 -11.65945 -10.98718 -10.82162 -10.71243 -9.83488 -9.79637 -9.76448 -9.63229 -9.37700 -8.32773 -6.37549 0.36486 0.52746 1.31835 1.35408 1.42888 1.45260 1.61292 1.94327 1.98960 2.30918 2.69671 2.86943 3.01221 3.33367 3.49033 3.73611 3.97322 4.01584 4.08184 4.12551 4.16564 4.23516 4.30181 4.34740 4.42706 4.45354 4.57611 4.61355 4.62987 4.70551 4.74582 4.78560 4.83447 4.87626 4.89334 4.90803 4.93101 5.16505 5.18531 5.31842 5.41140 5.47063 5.60629 5.64279 5.66802 5.71346 5.79655 6.06909 6.23386 6.27476 6.63156 6.68386 6.99535 7.20328 7.33681 8.84072 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.003800 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.202961 B = 7366.917870 C = 9199.995040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.072 3.928 3 H 0.095 0.905 4 C 0.521 3.479 5 O -0.581 6.581 6 N -0.606 5.606 7 C 0.070 3.930 8 C 0.126 3.874 9 C 0.021 3.979 10 N -0.528 5.528 11 C 0.055 3.945 12 C 0.511 3.489 13 O -0.552 6.552 14 N -0.561 5.561 15 C 0.232 3.768 16 C -0.529 4.529 17 H 0.029 0.971 18 C 0.013 3.987 19 N -0.945 5.945 20 Si 0.944 3.056 21 H -0.257 1.257 22 H -0.250 1.250 23 H -0.282 1.282 24 C 0.114 3.886 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.111 4.111 28 C -0.104 4.104 29 C -0.124 4.124 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.267 0.733 45 H 0.093 0.907 46 H 0.139 0.861 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 15.511 14.686 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.039 4.039 3 H 0.112 0.888 4 C 0.309 3.691 5 O -0.462 6.462 6 N -0.338 5.338 7 C -0.072 4.072 8 C 0.003 3.997 9 C -0.107 4.107 10 N -0.255 5.255 11 C -0.075 4.075 12 C 0.300 3.700 13 O -0.430 6.430 14 N -0.289 5.289 15 C 0.111 3.889 16 C -0.568 4.568 17 H 0.048 0.952 18 C -0.185 4.185 19 N -0.585 5.585 20 Si 0.767 3.233 21 H -0.182 1.182 22 H -0.173 1.173 23 H -0.208 1.208 24 C 0.025 3.975 25 C -0.145 4.145 26 C -0.132 4.132 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.143 4.143 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.157 0.843 47 H 0.175 0.825 48 H 0.178 0.822 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.834 14.417 15.124 21.446 hybrid contribution 0.518 -0.414 -0.979 1.182 sum 5.351 14.002 14.145 20.610 Atomic orbital electron populations 1.21674 0.90817 1.02736 1.03462 1.21774 0.98609 0.97008 0.86482 0.88784 1.20247 0.79291 0.79266 0.90262 1.90659 1.57804 1.65582 1.32163 1.47521 1.33057 1.43064 1.10126 1.21880 1.01288 0.98635 0.85408 1.21552 0.97927 0.98308 0.81890 1.22847 0.87331 0.98935 1.01568 1.62188 1.14997 1.47822 1.00456 1.21922 1.03000 0.95755 0.86862 1.20916 0.78904 0.85707 0.84470 1.90599 1.45950 1.21070 1.85404 1.45466 1.55400 1.19941 1.08101 1.19374 0.93492 0.92359 0.83701 1.21463 0.98342 1.25372 1.11626 0.95242 1.25805 1.01677 0.94120 0.96913 1.70052 1.36777 1.29046 1.22600 0.85767 0.79718 0.78409 0.79442 1.18163 1.17341 1.20769 1.17897 0.91879 0.85084 1.02673 1.21477 0.94626 0.98845 0.99552 1.21304 1.00932 0.91477 0.99537 1.21569 0.94860 0.98671 0.97746 1.21389 0.95017 0.97450 0.98402 1.21496 1.00295 0.91357 1.01169 0.93115 0.90364 0.90142 0.90685 0.91041 0.89710 0.87186 0.91748 0.87672 0.92534 0.89234 0.87049 0.94962 0.94240 0.92358 0.88883 0.84321 0.82514 0.82245 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.84 71.98 0.64 -2.32 16 2 C 0.07 1.72 2.50 44.03 0.11 1.83 16 3 H 0.09 1.87 8.11 -2.39 -0.02 1.85 16 4 C 0.52 14.14 7.13 87.68 0.62 14.76 16 5 O -0.58 -18.66 15.30 -3.05 -0.05 -18.70 16 6 N -0.61 -14.14 3.23 -850.25 -2.74 -16.88 16 7 C 0.07 1.27 10.55 127.77 1.35 2.62 16 8 C 0.13 2.73 6.64 86.46 0.57 3.30 16 9 C 0.02 0.51 5.14 86.24 0.44 0.96 16 10 N -0.53 -14.42 4.35 -880.04 -3.83 -18.25 16 11 C 0.05 1.52 4.12 85.56 0.35 1.87 16 12 C 0.51 19.53 7.10 87.66 0.62 20.16 16 13 O -0.55 -25.28 13.53 -3.06 -0.04 -25.32 16 14 N -0.56 -22.24 2.48 -635.31 -1.58 -23.82 16 15 C 0.23 11.02 4.20 85.63 0.36 11.38 16 16 C -0.53 -30.67 9.94 25.60 0.25 -30.41 16 17 H 0.03 1.92 7.83 -2.91 -0.02 1.90 16 18 C 0.01 0.75 5.47 84.65 0.46 1.21 16 19 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 20 Si 0.94 43.64 27.47 68.60 1.88 45.53 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 C 0.11 3.69 4.04 38.15 0.15 3.84 16 25 C -0.13 -4.10 9.97 22.39 0.22 -3.88 16 26 C -0.11 -2.71 10.04 22.25 0.22 -2.49 16 27 C -0.11 -1.95 10.04 22.29 0.22 -1.73 16 28 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 29 C -0.12 -2.92 9.16 22.39 0.21 -2.71 16 30 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 32 H 0.08 1.59 6.58 -2.38 -0.02 1.58 16 33 H 0.07 1.61 6.67 -2.39 -0.02 1.60 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 3.22 5.07 -2.39 -0.01 3.20 16 39 H 0.06 1.15 8.08 -2.38 -0.02 1.14 16 40 H 0.09 1.97 7.25 -2.39 -0.02 1.96 16 41 H 0.11 3.04 6.54 -2.39 -0.02 3.02 16 42 H 0.03 1.61 6.52 -2.39 -0.02 1.60 16 43 H 0.04 1.77 7.48 -2.39 -0.02 1.75 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.09 3.74 7.83 -2.91 -0.02 3.71 16 46 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -78.95 392.98 1.88 -77.08 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.89 Total: 22.61 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 7.04 Total: 16.81 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -7.85 Total: -118.01 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.09 Total: -44.02 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Total: -78.95 1.88 -77.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187014968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.812 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds