Wall clock time and date at job start Wed Apr 1 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.56543 * 2 1 4 4 C 1.50443 * 109.56804 * 120.36177 * 2 1 3 5 5 O 1.21285 * 118.48446 * 287.13436 * 4 2 1 6 6 N 1.33375 * 123.02312 * 107.11205 * 4 2 1 7 7 C 1.46499 * 117.70484 * 184.29447 * 6 4 2 8 8 C 1.45648 * 124.59033 * 4.32351 * 6 4 2 9 9 C 1.53463 * 110.73950 * 337.97473 * 8 6 4 10 10 N 1.47054 * 109.56856 * 239.76555 * 2 1 3 11 11 C 1.34777 * 121.35103 * 102.88778 * 10 2 1 12 12 O 1.21585 * 120.00156 * 354.57324 * 11 10 2 13 13 N 1.34776 * 119.99723 * 174.56479 * 11 10 2 14 14 C 1.46497 * 120.00041 * 184.53468 * 13 11 10 15 15 H 1.09001 * 109.47008 * 15.21255 * 14 13 11 16 16 C 1.53001 * 109.47402 * 255.21303 * 14 13 11 17 17 C 1.50700 * 109.47281 * 64.67106 * 16 14 13 18 18 H 1.07994 * 119.99885 * 2.51540 * 17 16 14 19 19 C 1.37876 * 120.00173 * 182.52134 * 17 16 14 20 20 N 1.31514 * 119.99624 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00184 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47145 * 90.00015 * 21 19 17 23 23 H 1.48504 * 109.47380 * 209.99899 * 21 19 17 24 24 H 1.48498 * 109.47062 * 330.00070 * 21 19 17 25 25 C 1.50703 * 109.47215 * 135.20842 * 14 13 11 26 26 C 1.38230 * 120.00343 * 219.99835 * 25 14 13 27 27 C 1.38230 * 119.99964 * 180.02562 * 26 25 14 28 28 C 1.38229 * 120.00365 * 0.02562 * 27 26 25 29 29 C 1.38242 * 119.99780 * 359.96652 * 28 27 26 30 30 C 1.38232 * 119.99921 * 0.05783 * 29 28 27 31 31 H 1.09002 * 109.46742 * 180.23537 * 1 2 3 32 32 H 1.09000 * 109.46866 * 300.23253 * 1 2 3 33 33 H 1.09001 * 109.47065 * 60.23705 * 1 2 3 34 34 H 1.08999 * 109.47083 * 0.02562 * 7 6 4 35 35 H 1.08999 * 109.47307 * 119.99931 * 7 6 4 36 36 H 1.08996 * 109.47748 * 240.00732 * 7 6 4 37 37 H 1.09000 * 109.21786 * 98.42796 * 8 6 4 38 38 H 1.09007 * 109.21228 * 217.76107 * 8 6 4 39 39 H 1.09003 * 109.85069 * 287.32014 * 9 8 6 40 40 H 1.08996 * 109.84039 * 166.50775 * 9 8 6 41 41 H 0.97006 * 120.00079 * 4.54205 * 13 11 10 42 42 H 1.09002 * 109.47240 * 184.67335 * 16 14 13 43 43 H 1.09002 * 109.46696 * 304.67411 * 16 14 13 44 44 H 0.97004 * 119.99825 * 180.02562 * 20 19 17 45 45 H 1.08004 * 119.99669 * 0.02562 * 26 25 14 46 46 H 1.08001 * 119.99851 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00480 * 179.70029 * 28 27 26 48 48 H 1.08001 * 119.99988 * 179.97438 * 29 28 27 49 49 H 1.07995 * 119.99862 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0339 -0.7165 1.2231 5 8 1.9317 -0.1662 2.2991 6 7 2.5874 -1.9292 1.1788 7 6 2.9504 -2.5591 2.4506 8 6 2.8568 -2.6708 -0.0455 9 6 1.9679 -2.1694 -1.1915 10 7 2.0226 -0.6977 -1.1971 11 6 2.4993 -0.0177 -2.2586 12 8 2.4377 1.1963 -2.2805 13 7 3.0446 -0.6836 -3.2958 14 6 3.6521 0.0573 -4.4040 15 1 3.8146 1.0923 -4.1031 16 6 2.7188 0.0190 -5.6157 17 6 1.4423 0.7509 -5.2900 18 1 1.3263 1.2334 -4.3308 19 6 0.4227 0.8044 -6.2165 20 7 0.5642 0.2172 -7.3847 21 14 -1.1598 1.7110 -5.8125 22 1 -1.0383 3.1302 -6.2325 23 1 -2.2920 1.0765 -6.5341 24 1 -1.4071 1.6472 -4.3496 25 6 4.9719 -0.5735 -4.7663 26 6 6.0544 0.2241 -5.0871 27 6 7.2648 -0.3546 -5.4199 28 6 7.3927 -1.7309 -5.4325 29 6 6.3102 -2.5286 -5.1115 30 6 5.0996 -1.9499 -4.7792 31 1 -0.3633 -1.0277 0.0042 32 1 -0.3633 0.5174 0.8879 33 1 -0.3633 0.5102 -0.8921 34 1 2.6920 -1.8923 3.2732 35 1 2.4066 -3.4975 2.5596 36 1 4.0222 -2.7565 2.4656 37 1 3.9042 -2.5434 -0.3190 38 1 2.6574 -3.7289 0.1249 39 1 0.9407 -2.4986 -1.0344 40 1 2.3370 -2.5548 -2.1418 41 1 3.0346 -1.6535 -3.3087 42 1 3.2059 0.4983 -6.4649 43 1 2.4899 -1.0171 -5.8653 44 1 -0.1530 0.2552 -8.0367 45 1 5.9544 1.2994 -5.0777 46 1 8.1104 0.2685 -5.6710 47 1 8.3370 -2.1832 -5.6972 48 1 6.4099 -3.6040 -5.1217 49 1 4.2539 -2.5731 -4.5288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187243047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:06 Heat of formation + Delta-G solvation = -18.632182 kcal Electronic energy + Delta-G solvation = -31486.829104 eV Core-core repulsion = 27414.485850 eV Total energy + Delta-G solvation = -4072.343254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00255 -39.63028 -38.71037 -36.60829 -35.54106 -34.74688 -32.78042 -31.89011 -30.75999 -30.47653 -29.35612 -28.47800 -27.21319 -24.98690 -24.11421 -23.57578 -22.44701 -22.00439 -20.81837 -19.70318 -18.68838 -17.94765 -17.47180 -16.65746 -16.39382 -16.15099 -15.92568 -15.49020 -15.03308 -14.80958 -14.70455 -14.36881 -14.30004 -13.92812 -13.59090 -13.40727 -13.15600 -13.02748 -12.92344 -12.62119 -12.54633 -12.45937 -12.14232 -12.10493 -12.04885 -11.79705 -11.59020 -11.40441 -11.11105 -10.95939 -10.78422 -10.54676 -10.32917 -10.12199 -9.92517 -9.59575 -9.05938 -9.00684 -8.68635 -8.61681 -8.45705 -8.32301 -8.07454 -5.95882 -3.95310 1.61931 1.64417 2.43064 2.59477 2.89578 3.36197 3.42404 3.49002 3.67257 3.99736 4.14244 4.30442 4.51681 4.52982 4.84445 4.87043 5.08466 5.10485 5.11589 5.13639 5.19484 5.22480 5.23092 5.32674 5.38324 5.41770 5.56684 5.62369 5.68560 5.74632 5.79024 5.80228 6.04795 6.07316 6.19869 6.22948 6.34232 6.41200 6.65184 6.71282 6.72869 6.85370 7.00346 7.12304 7.17201 7.25093 7.61221 7.72880 7.93835 8.05421 8.34540 8.44493 9.05450 9.17337 9.68810 11.15489 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007321 B = 0.004883 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.786341 B = 5732.712276 C = 8701.057630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.130 0.870 4 C 0.518 3.482 5 O -0.546 6.546 6 N -0.605 5.605 7 C 0.068 3.932 8 C 0.100 3.900 9 C 0.097 3.903 10 N -0.637 5.637 11 C 0.720 3.280 12 O -0.573 6.573 13 N -0.717 5.717 14 C 0.195 3.805 15 H 0.098 0.902 16 C 0.022 3.978 17 C -0.508 4.508 18 H 0.072 0.928 19 C 0.056 3.944 20 N -0.900 5.900 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.274 1.274 25 C -0.071 4.071 26 C -0.111 4.111 27 C -0.119 4.119 28 C -0.134 4.134 29 C -0.121 4.121 30 C -0.114 4.114 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.385 0.615 42 H 0.026 0.974 43 H 0.021 0.979 44 H 0.258 0.742 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.753 -11.203 12.461 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.148 0.852 4 C 0.306 3.694 5 O -0.423 6.423 6 N -0.338 5.338 7 C -0.074 4.074 8 C -0.024 4.024 9 C -0.027 4.027 10 N -0.378 5.378 11 C 0.422 3.578 12 O -0.449 6.449 13 N -0.372 5.372 14 C 0.090 3.910 15 H 0.116 0.884 16 C -0.016 4.016 17 C -0.546 4.546 18 H 0.090 0.910 19 C -0.144 4.144 20 N -0.540 5.540 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.199 1.199 25 C -0.072 4.072 26 C -0.130 4.130 27 C -0.137 4.137 28 C -0.152 4.152 29 C -0.139 4.139 30 C -0.132 4.132 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.221 0.779 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.141 0.859 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.589 -9.996 12.791 18.366 hybrid contribution -0.938 -0.337 -0.193 1.015 sum 7.651 -10.333 12.598 18.000 Atomic orbital electron populations 1.22030 0.92381 1.02687 1.04020 1.21073 0.95970 0.98285 0.80131 0.85246 1.20452 0.76801 0.80995 0.91153 1.90703 1.56939 1.64809 1.29869 1.47093 1.61338 1.17590 1.07811 1.21795 1.00230 0.98379 0.87038 1.21904 1.00316 0.96192 0.84030 1.22011 1.00687 0.81265 0.98733 1.47433 1.68264 1.05431 1.16676 1.15571 0.77805 0.85238 0.79194 1.90915 1.62365 1.11566 1.80051 1.45096 1.62341 1.08837 1.20875 1.20218 0.87826 0.95006 0.87900 0.88445 1.19496 0.93439 0.97950 0.90704 1.21383 0.98966 1.32658 1.01639 0.91026 1.24969 0.98564 0.95774 0.95099 1.69976 1.33145 1.44589 1.06331 0.86638 0.83209 0.80033 0.78405 1.20747 1.21590 1.19921 1.20447 0.95657 0.93835 0.97215 1.21053 0.92305 1.00061 0.99557 1.21073 0.97427 0.94953 1.00285 1.21029 0.98572 0.93924 1.01706 1.21047 0.93270 0.99365 1.00194 1.20869 0.97186 0.94451 1.00700 0.92367 0.90705 0.90121 0.89030 0.92128 0.92228 0.91054 0.89465 0.90056 0.88240 0.77925 0.95611 0.96077 0.93262 0.85922 0.86448 0.86706 0.86548 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.38 37.16 0.35 -1.68 16 2 C 0.15 2.23 3.03 -68.90 -0.21 2.02 16 3 H 0.13 2.16 7.29 -51.93 -0.38 1.78 16 4 C 0.52 7.22 6.84 -11.73 -0.08 7.14 16 5 O -0.55 -9.06 15.97 5.55 0.09 -8.97 16 6 N -0.61 -6.50 3.20 -182.48 -0.58 -7.08 16 7 C 0.07 0.58 10.43 59.85 0.62 1.21 16 8 C 0.10 0.81 6.60 -4.26 -0.03 0.78 16 9 C 0.10 0.97 6.41 -3.38 -0.02 0.94 16 10 N -0.64 -9.22 2.62 -171.94 -0.45 -9.67 16 11 C 0.72 13.34 7.80 -86.92 -0.68 12.67 16 12 O -0.57 -13.09 13.96 5.29 0.07 -13.01 16 13 N -0.72 -12.34 4.52 -59.81 -0.27 -12.61 16 14 C 0.19 3.82 2.40 -69.08 -0.17 3.65 16 15 H 0.10 2.13 6.96 -51.93 -0.36 1.77 16 16 C 0.02 0.53 4.63 -27.88 -0.13 0.40 16 17 C -0.51 -14.03 8.74 -34.44 -0.30 -14.33 16 18 H 0.07 2.06 5.82 -52.49 -0.31 1.75 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 21 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.07 -1.17 4.95 -104.62 -0.52 -1.69 16 26 C -0.11 -1.72 9.67 -39.59 -0.38 -2.10 16 27 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 28 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 29 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 30 C -0.11 -1.63 9.24 -39.58 -0.37 -1.99 16 31 H 0.06 0.68 7.49 -51.93 -0.39 0.29 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 0.95 6.59 -51.93 -0.34 0.61 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 39 H 0.08 0.73 7.49 -51.93 -0.39 0.35 16 40 H 0.10 0.86 5.68 -51.93 -0.29 0.57 16 41 H 0.39 5.42 4.70 -40.82 -0.19 5.23 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.12 1.82 8.04 -52.48 -0.42 1.40 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 48 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 49 H 0.12 1.47 6.80 -52.49 -0.36 1.11 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -35.47 394.51 -9.89 -45.36 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.21 Total: 6.03 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.20 Total: 2.61 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.57 Total: -55.20 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.16 Total: -21.99 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.47 -9.89 -45.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187243047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.723 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds