Wall clock time and date at job start Wed Apr 1 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.59931 * 2 1 4 4 C 1.51333 * 109.73121 * 239.60479 * 2 1 3 5 5 O 1.21278 * 120.35655 * 128.40278 * 4 2 1 6 6 N 1.34257 * 119.29504 * 308.43086 * 4 2 1 7 7 C 1.46697 * 120.37542 * 357.11291 * 6 4 2 8 8 C 1.53044 * 109.06948 * 288.73475 * 7 6 4 9 9 C 1.51965 * 110.21562 * 88.58538 * 8 7 6 10 10 N 1.46067 * 111.76257 * 297.48533 * 9 8 7 11 11 C 1.34776 * 119.80791 * 242.98192 * 10 9 8 12 12 O 1.21584 * 120.00173 * 4.59411 * 11 10 9 13 13 N 1.34776 * 119.99900 * 184.59764 * 11 10 9 14 14 C 1.46506 * 119.99971 * 175.26388 * 13 11 10 15 15 H 1.08999 * 109.47222 * 328.76710 * 14 13 11 16 16 C 1.53009 * 109.46904 * 88.76197 * 14 13 11 17 17 C 1.50700 * 109.47261 * 185.17772 * 16 14 13 18 18 H 1.08004 * 119.99634 * 5.16559 * 17 16 14 19 19 C 1.37867 * 120.00096 * 185.16755 * 17 16 14 20 20 N 1.31517 * 120.00189 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00197 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46892 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46857 * 119.99689 * 21 19 17 24 24 H 1.48499 * 109.46977 * 239.99950 * 21 19 17 25 25 C 1.50692 * 109.47319 * 208.76204 * 14 13 11 26 26 C 1.38234 * 120.00392 * 319.72788 * 25 14 13 27 27 C 1.38232 * 120.00383 * 180.34398 * 26 25 14 28 28 C 1.38231 * 119.99848 * 359.88468 * 27 26 25 29 29 C 1.38234 * 120.00227 * 0.09104 * 28 27 26 30 30 C 1.38234 * 120.00035 * 139.99953 * 25 14 13 31 31 H 1.09008 * 109.46942 * 335.70253 * 1 2 3 32 32 H 1.08998 * 109.47586 * 95.70565 * 1 2 3 33 33 H 1.09004 * 109.46861 * 215.70890 * 1 2 3 34 34 H 0.96999 * 119.81141 * 177.14106 * 6 4 2 35 35 H 1.08995 * 109.53620 * 48.61156 * 7 6 4 36 36 H 1.08998 * 109.54237 * 168.78264 * 7 6 4 37 37 H 1.08995 * 109.35243 * 208.88395 * 8 7 6 38 38 H 1.08994 * 109.35609 * 328.60413 * 8 7 6 39 39 H 1.08995 * 108.93828 * 176.89108 * 9 8 7 40 40 H 1.09006 * 108.95519 * 58.08355 * 9 8 7 41 41 H 0.96996 * 120.00531 * 355.26251 * 13 11 10 42 42 H 1.08998 * 109.47034 * 305.18374 * 16 14 13 43 43 H 1.09007 * 109.46597 * 65.18063 * 16 14 13 44 44 H 0.97000 * 120.00308 * 180.02562 * 20 19 17 45 45 H 1.08001 * 119.99739 * 0.27727 * 26 25 14 46 46 H 1.07995 * 120.00122 * 180.02562 * 27 26 25 47 47 H 1.08005 * 120.00062 * 180.10774 * 28 27 26 48 48 H 1.08000 * 120.00448 * 179.97438 * 29 28 27 49 49 H 1.08004 * 120.00000 * 359.70778 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0409 -0.7207 -1.2287 5 8 2.8597 -0.1942 -1.9520 6 7 1.5776 -1.9491 -1.5099 7 6 0.6347 -2.6120 -0.6025 8 6 1.3729 -3.0209 0.6742 9 6 1.3367 -1.8888 1.6873 10 7 2.0220 -0.6974 1.1927 11 6 3.1161 -0.2397 1.8329 12 8 3.5791 -0.8639 2.7679 13 7 3.6970 0.9101 1.4366 14 6 4.8222 1.4618 2.1954 15 1 4.7136 1.2004 3.2480 16 6 6.1325 0.8821 1.6586 17 6 7.2783 1.3495 2.5186 18 1 7.0836 1.9260 3.4109 19 6 8.5751 1.0412 2.1664 20 7 8.8123 0.3396 1.0796 21 14 9.9954 1.6199 3.2329 22 1 9.4658 2.3858 4.3896 23 1 10.7568 0.4435 3.7242 24 1 10.8927 2.4911 2.4321 25 6 4.8394 2.9616 2.0494 26 6 4.5599 3.5402 0.8255 27 6 4.5827 4.9157 0.6899 28 6 4.8825 5.7127 1.7788 29 6 5.1615 5.1341 3.0029 30 6 5.1401 3.7586 3.1381 31 1 -0.3633 0.9367 0.4229 32 1 -0.3634 -0.1022 -1.0225 33 1 -0.3633 -0.8345 0.5998 34 1 1.8684 -2.4009 -2.3175 35 1 -0.1740 -1.9254 -0.3520 36 1 0.2239 -3.4977 -1.0870 37 1 0.8958 -3.9034 1.1003 38 1 2.4104 -3.2520 0.4333 39 1 1.8188 -2.2212 2.6066 40 1 0.2976 -1.6386 1.9017 41 1 3.3701 1.3724 0.6490 42 1 6.0834 -0.2066 1.6789 43 1 6.2862 1.2198 0.6336 44 1 9.7246 0.1224 0.8319 45 1 4.3249 2.9175 -0.0250 46 1 4.3639 5.3677 -0.2662 47 1 4.8986 6.7874 1.6733 48 1 5.3962 5.7568 3.8535 49 1 5.3582 3.3066 4.0945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191508116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:32 Heat of formation + Delta-G solvation = -12.414785 kcal Electronic energy + Delta-G solvation = -31746.324500 eV Core-core repulsion = 27674.250853 eV Total energy + Delta-G solvation = -4072.073647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.17397 -39.42223 -38.58124 -37.04299 -35.11436 -34.84377 -32.86336 -32.26648 -31.12136 -30.42489 -30.07419 -28.48263 -26.16553 -25.09471 -24.55500 -22.34558 -22.13718 -21.69444 -20.80308 -19.94149 -19.10594 -18.74158 -17.42014 -16.99834 -16.30592 -15.99694 -15.74526 -15.23193 -14.96356 -14.74023 -14.59400 -14.37389 -14.29912 -14.04482 -13.66004 -13.44208 -13.36917 -13.04169 -12.88376 -12.70523 -12.53895 -12.46698 -12.17779 -12.10858 -12.04267 -11.43655 -11.25663 -11.07611 -10.87952 -10.80528 -10.65942 -10.54782 -10.20231 -9.92961 -9.89258 -9.74730 -9.23610 -9.05228 -8.73523 -8.40313 -8.38695 -8.26226 -7.94966 -5.90908 -3.92401 1.88185 1.92348 2.23921 2.95968 3.12197 3.37624 3.44414 3.48136 3.53813 4.08173 4.19718 4.36121 4.47014 4.52347 4.55440 4.67407 4.72692 4.99811 5.15120 5.21096 5.28075 5.32387 5.36216 5.39232 5.44318 5.46264 5.47345 5.60050 5.62627 5.80926 5.99343 6.03781 6.05429 6.20849 6.43926 6.48041 6.56931 6.64118 6.81385 6.90951 6.93148 6.96310 7.00726 7.05328 7.25443 7.50763 7.77181 7.81869 8.06075 8.08218 8.27456 8.44893 8.93928 9.12489 9.70001 11.20782 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003851 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.779393 B = 7269.757189 C = 8511.556505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 H 0.114 0.886 4 C 0.507 3.493 5 O -0.529 6.529 6 N -0.723 5.723 7 C 0.084 3.916 8 C -0.163 4.163 9 C 0.121 3.879 10 N -0.623 5.623 11 C 0.707 3.293 12 O -0.575 6.575 13 N -0.732 5.732 14 C 0.196 3.804 15 H 0.088 0.912 16 C 0.025 3.975 17 C -0.509 4.509 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.889 3.111 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.047 4.047 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.135 4.135 29 C -0.121 4.121 30 C -0.097 4.097 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.389 0.611 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.259 0.741 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.685 -0.622 -2.870 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 H 0.131 0.869 4 C 0.291 3.709 5 O -0.403 6.403 6 N -0.376 5.376 7 C -0.040 4.040 8 C -0.202 4.202 9 C -0.002 4.002 10 N -0.363 5.363 11 C 0.409 3.591 12 O -0.451 6.451 13 N -0.387 5.387 14 C 0.093 3.907 15 H 0.106 0.894 16 C -0.013 4.013 17 C -0.548 4.548 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.717 3.283 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.048 4.048 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.153 4.153 29 C -0.140 4.140 30 C -0.116 4.116 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.236 0.764 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.225 0.775 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.808 -0.741 -2.442 21.957 hybrid contribution 1.073 0.159 -0.428 1.166 sum -20.735 -0.581 -2.870 20.941 Atomic orbital electron populations 1.22462 0.92719 1.04307 1.03426 1.21437 0.96347 0.97153 0.83546 0.86872 1.21216 0.80924 0.81984 0.86784 1.90817 1.31665 1.66684 1.51156 1.45933 1.47683 1.17538 1.26469 1.22262 0.92481 0.98526 0.90750 1.22321 1.02825 0.98968 0.96135 1.21056 0.97041 0.83727 0.98408 1.47049 1.30283 1.30115 1.28851 1.15845 0.79366 0.81530 0.82375 1.90932 1.64445 1.58355 1.31389 1.45654 1.36395 1.24502 1.32194 1.20235 0.86696 0.87453 0.96308 0.89353 1.19433 0.88626 0.96466 0.96820 1.21090 0.90712 1.33829 1.09153 0.92341 1.24952 0.98839 0.95243 0.95143 1.69993 1.20055 1.38922 1.24292 0.86571 0.82649 0.78425 0.80610 1.19648 1.21109 1.21144 1.19933 0.96271 0.95193 0.93366 1.20861 1.01221 0.94757 0.96830 1.20969 1.00965 0.93685 0.98256 1.20967 1.01873 0.99092 0.93381 1.21024 1.00701 0.94851 0.97385 1.20953 0.98776 0.93185 0.98670 0.90642 0.90805 0.89327 0.76438 0.88572 0.89646 0.89288 0.90401 0.87957 0.91260 0.77457 0.95819 0.95880 0.93171 0.86786 0.86725 0.86915 0.86659 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 7.93 37.16 0.29 -0.87 16 2 C 0.12 1.41 2.85 -68.68 -0.20 1.21 16 3 H 0.11 1.36 5.85 -51.93 -0.30 1.05 16 4 C 0.51 6.80 6.83 -10.91 -0.07 6.73 16 5 O -0.53 -9.57 17.95 5.56 0.10 -9.47 16 6 N -0.72 -7.01 5.29 -60.04 -0.32 -7.33 16 7 C 0.08 0.52 6.32 -3.91 -0.02 0.50 16 8 C -0.16 -1.34 5.91 -27.23 -0.16 -1.50 16 9 C 0.12 1.25 5.53 -4.80 -0.03 1.22 16 10 N -0.62 -8.42 2.59 -173.62 -0.45 -8.87 16 11 C 0.71 13.29 8.25 -86.92 -0.72 12.57 16 12 O -0.57 -13.03 15.30 5.29 0.08 -12.94 16 13 N -0.73 -13.84 4.88 -59.81 -0.29 -14.13 16 14 C 0.20 4.30 2.22 -69.08 -0.15 4.15 16 15 H 0.09 2.05 7.39 -51.93 -0.38 1.66 16 16 C 0.02 0.67 4.75 -27.88 -0.13 0.54 16 17 C -0.51 -14.68 8.52 -34.44 -0.29 -14.97 16 18 H 0.06 1.62 6.75 -52.48 -0.35 1.26 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -28.01 13.29 55.43 0.74 -27.28 16 21 Si 0.89 22.51 29.54 -169.99 -5.02 17.48 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 C -0.05 -0.92 4.48 -104.63 -0.47 -1.39 16 26 C -0.12 -2.12 9.09 -39.58 -0.36 -2.48 16 27 C -0.12 -1.89 10.05 -39.59 -0.40 -2.29 16 28 C -0.13 -2.03 10.05 -39.59 -0.40 -2.43 16 29 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 30 C -0.10 -1.80 8.79 -39.58 -0.35 -2.15 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.43 7.51 -51.93 -0.39 0.04 16 33 H 0.09 0.48 3.61 -51.93 -0.19 0.29 16 34 H 0.40 3.58 8.93 -40.82 -0.36 3.22 16 35 H 0.10 0.46 3.66 -51.93 -0.19 0.27 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 39 H 0.10 1.30 6.86 -51.93 -0.36 0.94 16 40 H 0.07 0.49 6.28 -51.93 -0.33 0.17 16 41 H 0.39 6.57 4.42 -40.82 -0.18 6.39 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.11 1.97 6.88 -52.49 -0.36 1.61 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 48 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 49 H 0.12 2.18 7.85 -52.48 -0.41 1.77 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -38.11 384.46 -10.07 -48.18 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.74 Total: 10.42 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.95 Total: -1.85 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.32 Total: -57.61 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.18 Total: -22.41 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.11 -10.07 -48.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191508116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.764 kcal (2) G-P(sol) polarization free energy of solvation -38.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds