Wall clock time and date at job start Wed Apr 1 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.59931 * 2 1 4 4 C 1.51333 * 109.73121 * 239.60479 * 2 1 3 5 5 O 1.21278 * 120.35655 * 128.40278 * 4 2 1 6 6 N 1.34257 * 119.29504 * 308.43086 * 4 2 1 7 7 C 1.46697 * 120.37542 * 357.11291 * 6 4 2 8 8 C 1.53044 * 109.06948 * 288.73475 * 7 6 4 9 9 C 1.51965 * 110.21562 * 88.58538 * 8 7 6 10 10 N 1.46067 * 111.76257 * 297.48533 * 9 8 7 11 11 C 1.34776 * 119.80791 * 242.98192 * 10 9 8 12 12 O 1.21584 * 120.00173 * 4.59411 * 11 10 9 13 13 N 1.34776 * 119.99900 * 184.59764 * 11 10 9 14 14 C 1.46506 * 119.99971 * 175.26388 * 13 11 10 15 15 H 1.08999 * 109.47222 * 328.76710 * 14 13 11 16 16 C 1.53009 * 109.46904 * 88.76197 * 14 13 11 17 17 C 1.50700 * 109.47261 * 185.17772 * 16 14 13 18 18 H 1.08004 * 119.99634 * 5.16559 * 17 16 14 19 19 C 1.37867 * 120.00096 * 185.16755 * 17 16 14 20 20 N 1.31517 * 120.00189 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00197 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46892 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46857 * 119.99689 * 21 19 17 24 24 H 1.48499 * 109.46977 * 239.99950 * 21 19 17 25 25 C 1.50692 * 109.47319 * 208.76204 * 14 13 11 26 26 C 1.38234 * 120.00392 * 319.72788 * 25 14 13 27 27 C 1.38232 * 120.00383 * 180.34398 * 26 25 14 28 28 C 1.38231 * 119.99848 * 359.88468 * 27 26 25 29 29 C 1.38234 * 120.00227 * 0.09104 * 28 27 26 30 30 C 1.38234 * 120.00035 * 139.99953 * 25 14 13 31 31 H 1.09008 * 109.46942 * 335.70253 * 1 2 3 32 32 H 1.08998 * 109.47586 * 95.70565 * 1 2 3 33 33 H 1.09004 * 109.46861 * 215.70890 * 1 2 3 34 34 H 0.96999 * 119.81141 * 177.14106 * 6 4 2 35 35 H 1.08995 * 109.53620 * 48.61156 * 7 6 4 36 36 H 1.08998 * 109.54237 * 168.78264 * 7 6 4 37 37 H 1.08995 * 109.35243 * 208.88395 * 8 7 6 38 38 H 1.08994 * 109.35609 * 328.60413 * 8 7 6 39 39 H 1.08995 * 108.93828 * 176.89108 * 9 8 7 40 40 H 1.09006 * 108.95519 * 58.08355 * 9 8 7 41 41 H 0.96996 * 120.00531 * 355.26251 * 13 11 10 42 42 H 1.08998 * 109.47034 * 305.18374 * 16 14 13 43 43 H 1.09007 * 109.46597 * 65.18063 * 16 14 13 44 44 H 0.97000 * 120.00308 * 180.02562 * 20 19 17 45 45 H 1.08001 * 119.99739 * 0.27727 * 26 25 14 46 46 H 1.07995 * 120.00122 * 180.02562 * 27 26 25 47 47 H 1.08005 * 120.00062 * 180.10774 * 28 27 26 48 48 H 1.08000 * 120.00448 * 179.97438 * 29 28 27 49 49 H 1.08004 * 120.00000 * 359.70778 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0409 -0.7207 -1.2287 5 8 2.8597 -0.1942 -1.9520 6 7 1.5776 -1.9491 -1.5099 7 6 0.6347 -2.6120 -0.6025 8 6 1.3729 -3.0209 0.6742 9 6 1.3367 -1.8888 1.6873 10 7 2.0220 -0.6974 1.1927 11 6 3.1161 -0.2397 1.8329 12 8 3.5791 -0.8639 2.7679 13 7 3.6970 0.9101 1.4366 14 6 4.8222 1.4618 2.1954 15 1 4.7136 1.2004 3.2480 16 6 6.1325 0.8821 1.6586 17 6 7.2783 1.3495 2.5186 18 1 7.0836 1.9260 3.4109 19 6 8.5751 1.0412 2.1664 20 7 8.8123 0.3396 1.0796 21 14 9.9954 1.6199 3.2329 22 1 9.4658 2.3858 4.3896 23 1 10.7568 0.4435 3.7242 24 1 10.8927 2.4911 2.4321 25 6 4.8394 2.9616 2.0494 26 6 4.5599 3.5402 0.8255 27 6 4.5827 4.9157 0.6899 28 6 4.8825 5.7127 1.7788 29 6 5.1615 5.1341 3.0029 30 6 5.1401 3.7586 3.1381 31 1 -0.3633 0.9367 0.4229 32 1 -0.3634 -0.1022 -1.0225 33 1 -0.3633 -0.8345 0.5998 34 1 1.8684 -2.4009 -2.3175 35 1 -0.1740 -1.9254 -0.3520 36 1 0.2239 -3.4977 -1.0870 37 1 0.8958 -3.9034 1.1003 38 1 2.4104 -3.2520 0.4333 39 1 1.8188 -2.2212 2.6066 40 1 0.2976 -1.6386 1.9017 41 1 3.3701 1.3724 0.6490 42 1 6.0834 -0.2066 1.6789 43 1 6.2862 1.2198 0.6336 44 1 9.7246 0.1224 0.8319 45 1 4.3249 2.9175 -0.0250 46 1 4.3639 5.3677 -0.2662 47 1 4.8986 6.7874 1.6733 48 1 5.3962 5.7568 3.8535 49 1 5.3582 3.3066 4.0945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191508116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:31 Heat of formation + Delta-G solvation = -40.548564 kcal Electronic energy + Delta-G solvation = -31747.544472 eV Core-core repulsion = 27674.250853 eV Total energy + Delta-G solvation = -4073.293619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.29695 -40.78818 -39.92492 -38.17305 -36.74278 -35.93234 -34.88268 -33.35571 -32.50687 -31.70658 -31.11192 -30.36964 -27.32698 -26.20771 -25.92831 -24.01020 -23.64754 -22.83045 -21.74747 -21.40258 -20.40811 -19.97870 -18.73480 -18.29666 -17.88621 -17.33455 -17.00701 -16.67505 -16.36689 -16.14717 -15.97720 -15.83874 -15.47845 -15.13222 -14.88234 -14.67901 -14.47142 -14.30139 -14.20807 -14.16923 -13.91943 -13.80436 -13.18247 -13.15309 -13.10863 -12.97042 -12.93293 -12.63319 -12.58393 -12.06971 -11.99089 -11.89323 -11.74800 -11.64070 -11.47420 -11.21097 -11.09046 -10.61065 -10.21657 -10.10222 -9.72192 -9.66816 -9.45554 -8.21211 -6.31785 0.52972 0.59439 1.12388 1.35478 1.37304 1.50396 1.79083 1.97868 2.32413 2.38804 2.80454 3.01144 3.13040 3.31952 3.67105 3.81571 3.88760 3.93582 3.98762 4.02853 4.22706 4.33230 4.36536 4.39097 4.46636 4.58931 4.66130 4.71661 4.74698 4.78491 4.81118 4.85945 4.94648 5.11518 5.12715 5.19959 5.26790 5.33623 5.38368 5.47018 5.50923 5.61470 5.67401 5.71644 5.73219 5.85350 5.90151 6.14340 6.18134 6.21332 6.79730 6.81204 7.09964 7.35917 7.45507 8.92071 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003851 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.779393 B = 7269.757189 C = 8511.556505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 H 0.101 0.899 4 C 0.497 3.503 5 O -0.590 6.590 6 N -0.712 5.712 7 C 0.082 3.918 8 C -0.158 4.158 9 C 0.109 3.891 10 N -0.612 5.612 11 C 0.697 3.303 12 O -0.624 6.624 13 N -0.729 5.729 14 C 0.214 3.786 15 H 0.067 0.933 16 C 0.041 3.959 17 C -0.520 4.520 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.938 5.938 21 Si 0.965 3.035 22 H -0.255 1.255 23 H -0.281 1.281 24 H -0.277 1.277 25 C -0.073 4.073 26 C -0.133 4.133 27 C -0.119 4.119 28 C -0.125 4.125 29 C -0.119 4.119 30 C -0.117 4.117 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.403 0.597 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.399 0.601 42 H -0.030 1.030 43 H -0.010 1.010 44 H 0.261 0.739 45 H 0.107 0.893 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.147 0.853 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.274 1.257 -2.516 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.119 0.881 4 C 0.282 3.718 5 O -0.469 6.469 6 N -0.363 5.363 7 C -0.040 4.040 8 C -0.197 4.197 9 C -0.013 4.013 10 N -0.351 5.351 11 C 0.399 3.601 12 O -0.504 6.504 13 N -0.385 5.385 14 C 0.109 3.891 15 H 0.086 0.914 16 C 0.003 3.997 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.579 5.579 21 Si 0.789 3.211 22 H -0.178 1.178 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.073 4.073 26 C -0.151 4.151 27 C -0.136 4.136 28 C -0.143 4.143 29 C -0.137 4.137 30 C -0.136 4.136 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.239 0.761 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.237 0.763 42 H -0.011 1.011 43 H 0.009 0.991 44 H 0.070 0.930 45 H 0.125 0.875 46 H 0.164 0.836 47 H 0.172 0.828 48 H 0.165 0.835 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.498 1.097 -2.105 24.612 hybrid contribution 1.801 -0.488 -0.586 1.956 sum -22.697 0.609 -2.691 22.864 Atomic orbital electron populations 1.22491 0.88148 1.06118 1.05184 1.21637 0.99737 0.95890 0.81471 0.88143 1.21642 0.80339 0.82988 0.86847 1.90783 1.34410 1.68431 1.53318 1.46036 1.47142 1.16241 1.26851 1.22620 0.91705 1.00410 0.89285 1.22324 1.01079 0.99432 0.96856 1.21454 0.98652 0.83221 0.97934 1.47095 1.28482 1.30810 1.28687 1.16175 0.80446 0.81133 0.82361 1.90883 1.66214 1.59573 1.33733 1.45470 1.35738 1.24902 1.32386 1.19649 0.84959 0.89617 0.94865 0.91442 1.19155 0.92100 0.93165 0.95264 1.21456 0.91373 1.33575 1.09459 0.91339 1.25988 1.02145 0.95199 0.96541 1.70159 1.20870 1.40413 1.26426 0.85392 0.78530 0.78142 0.79025 1.17824 1.20677 1.20236 1.19760 0.99168 0.93352 0.95052 1.20946 1.01966 0.96274 0.95910 1.21349 0.99694 0.92466 1.00124 1.21457 0.99409 1.01085 0.92301 1.21395 0.99440 0.93745 0.99101 1.21075 0.99763 0.94693 0.98070 0.89175 0.88980 0.87166 0.76054 0.85994 0.85747 0.85595 0.94634 0.90890 0.86489 0.76316 1.01138 0.99149 0.92995 0.87459 0.83644 0.82849 0.83536 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.93 71.98 0.57 -1.12 16 2 C 0.12 2.73 2.85 44.41 0.13 2.86 16 3 H 0.10 2.53 5.85 -2.39 -0.01 2.51 16 4 C 0.50 13.70 6.83 87.94 0.60 14.31 16 5 O -0.59 -22.86 17.95 -3.02 -0.05 -22.91 16 6 N -0.71 -13.19 5.29 -462.54 -2.45 -15.63 16 7 C 0.08 0.76 6.32 86.36 0.55 1.30 16 8 C -0.16 -2.36 5.91 30.27 0.18 -2.18 16 9 C 0.11 2.17 5.53 86.12 0.48 2.65 16 10 N -0.61 -17.14 2.59 -821.46 -2.13 -19.27 16 11 C 0.70 28.47 8.25 179.05 1.48 29.95 16 12 O -0.62 -30.98 15.30 -3.98 -0.06 -31.04 16 13 N -0.73 -30.22 4.88 -461.40 -2.25 -32.47 16 14 C 0.21 10.21 2.22 44.24 0.10 10.31 16 15 H 0.07 3.44 7.39 -2.39 -0.02 3.42 16 16 C 0.04 2.47 4.75 29.85 0.14 2.61 16 17 C -0.52 -31.62 8.52 25.60 0.22 -31.40 16 18 H 0.07 3.93 6.75 -2.91 -0.02 3.91 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 20 N -0.94 -61.79 13.29 21.44 0.28 -61.50 16 21 Si 0.97 47.17 29.54 68.60 2.03 49.19 16 22 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 C -0.07 -2.99 4.48 -19.87 -0.09 -3.08 16 26 C -0.13 -4.86 9.09 22.27 0.20 -4.65 16 27 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 28 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 29 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 30 C -0.12 -4.37 8.79 22.27 0.20 -4.18 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.09 0.71 7.51 -2.39 -0.02 0.69 16 33 H 0.11 0.65 3.61 -2.38 -0.01 0.64 16 34 H 0.40 7.03 8.93 -92.71 -0.83 6.20 16 35 H 0.12 0.57 3.66 -2.39 -0.01 0.56 16 36 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.13 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.03 0.85 8.04 -2.39 -0.02 0.83 16 39 H 0.07 1.94 6.86 -2.39 -0.02 1.92 16 40 H 0.12 1.24 6.28 -2.38 -0.01 1.23 16 41 H 0.40 14.77 4.42 -92.71 -0.41 14.36 16 42 H -0.03 -2.04 8.14 -2.39 -0.02 -2.06 16 43 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 44 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 45 H 0.11 3.96 6.88 -2.91 -0.02 3.94 16 46 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 47 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 48 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 49 H 0.11 4.28 7.85 -2.91 -0.02 4.26 16 Total: -1.00 -93.98 384.46 1.01 -92.97 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.23 Total: 32.58 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.88 Total: 8.09 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -6.54 Total: -128.88 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.12 Total: -53.95 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -93.98 1.01 -92.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191508116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.419 kcal (2) G-P(sol) polarization free energy of solvation -93.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds