Wall clock time and date at job start Wed Apr 1 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35892 * 116.99925 * 2 1 4 4 C 1.38733 * 120.05767 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.94826 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05539 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94371 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47151 * 339.99331 * 7 6 5 9 9 C 1.52994 * 109.47391 * 99.99781 * 7 6 5 10 10 N 1.46906 * 109.46865 * 219.99778 * 7 6 5 11 11 C 1.46901 * 110.99793 * 155.00158 * 10 7 6 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 7 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47162 * 90.00410 * 15 14 12 17 17 H 1.07998 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00057 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47241 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47303 * 119.99759 * 20 18 16 23 23 H 1.48495 * 109.47340 * 239.99921 * 20 18 16 24 24 C 1.46490 * 120.00111 * 0.02562 * 14 12 11 25 25 C 1.53001 * 109.47305 * 89.99580 * 24 14 12 26 26 C 1.47208 * 109.47132 * 179.97438 * 25 24 14 27 27 N 9.05625 * 147.88945 * 191.19756 * 5 1 2 28 28 C 1.38267 * 120.10971 * 0.26686 * 6 5 4 29 29 C 1.38144 * 120.05531 * 359.46114 * 28 6 5 30 30 H 1.09008 * 109.47203 * 60.00315 * 1 2 3 31 31 H 1.09007 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47569 * 299.99601 * 1 2 3 33 33 H 1.08006 * 120.02296 * 359.96159 * 4 3 2 34 34 H 1.08004 * 119.97427 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47340 * 59.99666 * 9 7 6 36 36 H 1.08995 * 109.47731 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47268 * 300.00245 * 9 7 6 38 38 H 1.00899 * 110.99995 * 31.04556 * 10 7 6 39 39 H 1.09002 * 109.47401 * 59.99808 * 11 10 7 40 40 H 1.09001 * 109.46874 * 299.99821 * 11 10 7 41 41 H 1.09000 * 109.47018 * 209.99971 * 15 14 12 42 42 H 1.09000 * 109.47828 * 330.00266 * 15 14 12 43 43 H 0.97001 * 119.99961 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.47028 * 209.99878 * 24 14 12 45 45 H 1.09002 * 109.47109 * 329.99455 * 24 14 12 46 46 H 1.09001 * 109.47263 * 299.99631 * 25 24 14 47 47 H 1.08996 * 109.47107 * 60.00334 * 25 24 14 48 48 H 1.07997 * 119.97143 * 179.70292 * 28 6 5 49 49 H 1.08002 * 120.02919 * 180.26823 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0116 4.9040 0.3496 9 6 3.9940 5.5856 -1.4226 10 7 3.2633 5.9371 0.8882 11 6 4.1511 6.9973 1.3838 12 6 3.3761 7.9182 2.2907 13 8 2.2002 7.7114 2.5035 14 7 3.9902 8.9711 2.8660 15 6 3.2369 9.8660 3.7480 16 6 3.3225 9.3628 5.1661 17 1 3.8817 8.4659 5.3879 18 6 2.6869 10.0475 6.1800 19 7 2.0064 11.1400 5.9099 20 14 2.7936 9.4242 7.9377 21 1 3.6128 8.1861 7.9751 22 1 3.4240 10.4614 8.7933 23 1 1.4284 9.1292 8.4421 24 6 5.4107 9.2205 2.6094 25 6 5.5562 10.1297 1.3875 26 6 6.9837 10.3809 1.1300 27 7 8.0842 10.5739 0.9348 28 6 1.9211 3.6047 0.0050 29 6 1.2915 2.3751 -0.0001 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0208 0.3799 0.0016 34 1 5.1345 2.5750 0.0000 35 1 2.9685 5.7001 -1.7739 36 1 4.4885 6.5570 -1.4234 37 1 4.5302 4.9041 -2.0829 38 1 2.8347 5.4374 1.6528 39 1 4.5451 7.5650 0.5408 40 1 4.9763 6.5504 1.9384 41 1 3.6581 10.8698 3.6927 42 1 2.1934 9.8920 3.4341 43 1 1.5596 11.6219 6.6233 44 1 5.8572 9.7048 3.4779 45 1 5.9174 8.2742 2.4206 46 1 5.1098 9.6455 0.5190 47 1 5.0496 11.0761 1.5764 48 1 1.3342 4.5113 0.0095 49 1 0.2129 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271627578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:38 Heat of formation + Delta-G solvation = -16.938271 kcal Electronic energy + Delta-G solvation = -29373.742563 eV Core-core repulsion = 25301.472763 eV Total energy + Delta-G solvation = -4072.269800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.41645 -39.38183 -38.27859 -36.90442 -35.89453 -35.15394 -32.92702 -31.54526 -31.24720 -30.83377 -29.10529 -27.86397 -27.41146 -25.75927 -24.00384 -23.40639 -22.78376 -22.02105 -20.44870 -18.69439 -18.33722 -17.62483 -16.87114 -16.60027 -16.46927 -16.01146 -15.97043 -15.44471 -15.20298 -14.77667 -14.65988 -14.54484 -14.20729 -13.84750 -13.82554 -13.72311 -13.39943 -13.12136 -13.03211 -12.67755 -12.52791 -12.44518 -12.40815 -12.19440 -12.01578 -11.98999 -11.72963 -11.59057 -11.29257 -11.16001 -10.99890 -10.96171 -10.93592 -10.83814 -10.63828 -10.20168 -9.69648 -9.16033 -9.02393 -8.48508 -8.40087 -8.28858 -7.83695 -6.09776 -4.14309 1.16643 1.24195 2.73205 2.81631 3.02728 3.27030 3.30997 3.35714 3.39193 3.50803 3.61944 4.04069 4.34898 4.42798 4.55968 4.62594 4.70695 4.85808 4.87425 4.95658 5.06049 5.12296 5.13761 5.16340 5.21533 5.25499 5.27231 5.32897 5.35522 5.44482 5.50911 5.58188 5.67395 5.76280 5.82650 5.89288 6.06686 6.08140 6.17466 6.21996 6.41309 6.57022 6.83487 7.05156 7.16680 7.35189 7.40211 7.43828 7.56883 7.86616 8.16708 8.27214 8.84306 9.00266 9.51392 10.98349 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008753 B = 0.002642 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.999729 B =10594.311458 C =12999.370031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.123 3.877 4 C -0.155 4.155 5 C -0.074 4.074 6 C -0.126 4.126 7 C 0.129 3.871 8 H 0.051 0.949 9 C -0.135 4.135 10 N -0.666 5.666 11 C 0.037 3.963 12 C 0.507 3.493 13 O -0.519 6.519 14 N -0.599 5.599 15 C 0.245 3.755 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.118 3.882 25 C -0.051 4.051 26 C 0.218 3.782 27 N -0.446 5.446 28 C -0.056 4.056 29 C -0.208 4.208 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.354 0.646 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.047 0.953 43 H 0.263 0.737 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.117 0.883 48 H 0.138 0.862 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 -16.241 -15.023 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.174 4.174 5 C -0.093 4.093 6 C -0.127 4.127 7 C 0.019 3.981 8 H 0.069 0.931 9 C -0.193 4.193 10 N -0.300 5.300 11 C -0.096 4.096 12 C 0.293 3.707 13 O -0.394 6.394 14 N -0.332 5.332 15 C 0.126 3.874 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.009 4.009 25 C -0.093 4.093 26 C -0.100 4.100 27 N -0.123 5.123 28 C -0.074 4.074 29 C -0.227 4.227 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.175 0.825 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.125 0.875 47 H 0.135 0.865 48 H 0.156 0.844 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.836 -15.718 -15.601 22.327 hybrid contribution -0.078 -0.627 1.791 1.900 sum 2.758 -16.345 -13.810 21.575 Atomic orbital electron populations 1.23059 0.78339 1.03840 1.01567 1.86046 1.21452 1.27141 1.88788 1.19079 0.92404 0.84148 0.96551 1.20346 0.91353 0.98488 1.07174 1.20830 0.99678 0.91003 0.97754 1.19832 0.93949 0.94410 1.04504 1.20378 0.94923 0.88042 0.94741 0.93131 1.21793 1.02702 1.00337 0.94464 1.60289 1.31899 1.14016 1.23795 1.22002 0.94671 0.94476 0.98406 1.20212 0.87854 0.81823 0.80835 1.90695 1.15916 1.71523 1.61258 1.48208 1.09104 1.28585 1.47256 1.19338 0.92646 0.87731 0.87642 1.21447 1.32539 1.10663 0.91961 0.92421 1.24915 0.94968 0.94896 0.99225 1.69929 1.33278 1.17079 1.32927 0.86473 0.77927 0.78744 0.84451 1.19841 1.20994 1.20889 1.21290 0.84382 0.98700 0.96484 1.19919 0.83392 1.04406 1.01559 1.29050 0.95028 0.92975 0.92993 1.81131 1.12831 1.09235 1.09152 1.20964 0.94092 0.97462 0.94870 1.21295 1.00146 0.92327 1.08909 0.92613 0.88346 0.92461 0.85384 0.85490 0.91709 0.92442 0.92635 0.82499 0.88665 0.92706 0.94764 0.93528 0.92727 0.88804 0.90812 0.87531 0.86466 0.84391 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.26 10.50 -19.40 -0.20 -3.47 16 3 C 0.12 1.32 6.69 -39.21 -0.26 1.06 16 4 C -0.15 -1.56 9.99 -39.43 -0.39 -1.96 16 5 C -0.07 -0.71 9.66 -39.61 -0.38 -1.09 16 6 C -0.13 -1.32 4.72 -104.60 -0.49 -1.81 16 7 C 0.13 1.30 2.82 -68.87 -0.19 1.10 16 8 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 9 C -0.14 -1.23 9.39 37.15 0.35 -0.89 16 10 N -0.67 -8.42 5.31 -109.22 -0.58 -9.00 16 11 C 0.04 0.46 4.52 -4.97 -0.02 0.44 16 12 C 0.51 9.07 7.71 -10.98 -0.08 8.99 16 13 O -0.52 -11.79 15.78 5.56 0.09 -11.70 16 14 N -0.60 -10.68 2.46 -175.06 -0.43 -11.11 16 15 C 0.25 5.74 5.16 -5.19 -0.03 5.71 16 16 C -0.53 -13.94 9.39 -34.44 -0.32 -14.27 16 17 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.12 1.52 5.17 -4.05 -0.02 1.50 16 25 C -0.05 -0.52 6.03 -29.51 -0.18 -0.70 16 26 C 0.22 2.56 15.43 -20.82 -0.32 2.24 16 27 N -0.45 -6.44 18.53 42.08 0.78 -5.66 16 28 C -0.06 -0.61 8.99 -39.61 -0.36 -0.96 16 29 C -0.21 -2.16 9.04 -39.43 -0.36 -2.51 16 30 H 0.06 0.32 7.66 -51.92 -0.40 -0.08 16 31 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.13 0.95 8.03 -52.48 -0.42 0.53 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.35 5.01 7.68 -39.29 -0.30 4.71 16 39 H 0.10 0.97 6.48 -51.93 -0.34 0.63 16 40 H 0.06 0.62 7.31 -51.93 -0.38 0.24 16 41 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 45 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 46 H 0.11 0.87 7.22 -51.93 -0.38 0.50 16 47 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.14 1.56 7.70 -52.49 -0.40 1.16 16 49 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 414.60 15.07 6.25 6.25 Total: -1.00 -33.37 414.60 -7.90 -41.27 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.35 Total: 2.32 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.17 Total: -0.37 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.51 Total: -50.42 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.12 Total: -15.17 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.37 -7.90 -41.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271627578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.334 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds