Wall clock time and date at job start Wed Apr 1 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35892 * 116.99925 * 2 1 4 4 C 1.38733 * 120.05767 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.94826 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05539 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94371 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47151 * 339.99331 * 7 6 5 9 9 C 1.52994 * 109.47391 * 99.99781 * 7 6 5 10 10 N 1.46906 * 109.46865 * 219.99778 * 7 6 5 11 11 C 1.46901 * 110.99793 * 155.00158 * 10 7 6 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 7 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47162 * 90.00410 * 15 14 12 17 17 H 1.07998 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00057 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47241 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47303 * 119.99759 * 20 18 16 23 23 H 1.48495 * 109.47340 * 239.99921 * 20 18 16 24 24 C 1.46490 * 120.00111 * 0.02562 * 14 12 11 25 25 C 1.53001 * 109.47305 * 89.99580 * 24 14 12 26 26 C 1.47208 * 109.47132 * 179.97438 * 25 24 14 27 27 N 9.05625 * 147.88945 * 191.19756 * 5 1 2 28 28 C 1.38267 * 120.10971 * 0.26686 * 6 5 4 29 29 C 1.38144 * 120.05531 * 359.46114 * 28 6 5 30 30 H 1.09008 * 109.47203 * 60.00315 * 1 2 3 31 31 H 1.09007 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47569 * 299.99601 * 1 2 3 33 33 H 1.08006 * 120.02296 * 359.96159 * 4 3 2 34 34 H 1.08004 * 119.97427 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47340 * 59.99666 * 9 7 6 36 36 H 1.08995 * 109.47731 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47268 * 300.00245 * 9 7 6 38 38 H 1.00899 * 110.99995 * 31.04556 * 10 7 6 39 39 H 1.09002 * 109.47401 * 59.99808 * 11 10 7 40 40 H 1.09001 * 109.46874 * 299.99821 * 11 10 7 41 41 H 1.09000 * 109.47018 * 209.99971 * 15 14 12 42 42 H 1.09000 * 109.47828 * 330.00266 * 15 14 12 43 43 H 0.97001 * 119.99961 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.47028 * 209.99878 * 24 14 12 45 45 H 1.09002 * 109.47109 * 329.99455 * 24 14 12 46 46 H 1.09001 * 109.47263 * 299.99631 * 25 24 14 47 47 H 1.08996 * 109.47107 * 60.00334 * 25 24 14 48 48 H 1.07997 * 119.97143 * 179.70292 * 28 6 5 49 49 H 1.08002 * 120.02919 * 180.26823 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0116 4.9040 0.3496 9 6 3.9940 5.5856 -1.4226 10 7 3.2633 5.9371 0.8882 11 6 4.1511 6.9973 1.3838 12 6 3.3761 7.9182 2.2907 13 8 2.2002 7.7114 2.5035 14 7 3.9902 8.9711 2.8660 15 6 3.2369 9.8660 3.7480 16 6 3.3225 9.3628 5.1661 17 1 3.8817 8.4659 5.3879 18 6 2.6869 10.0475 6.1800 19 7 2.0064 11.1400 5.9099 20 14 2.7936 9.4242 7.9377 21 1 3.6128 8.1861 7.9751 22 1 3.4240 10.4614 8.7933 23 1 1.4284 9.1292 8.4421 24 6 5.4107 9.2205 2.6094 25 6 5.5562 10.1297 1.3875 26 6 6.9837 10.3809 1.1300 27 7 8.0842 10.5739 0.9348 28 6 1.9211 3.6047 0.0050 29 6 1.2915 2.3751 -0.0001 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0208 0.3799 0.0016 34 1 5.1345 2.5750 0.0000 35 1 2.9685 5.7001 -1.7739 36 1 4.4885 6.5570 -1.4234 37 1 4.5302 4.9041 -2.0829 38 1 2.8347 5.4374 1.6528 39 1 4.5451 7.5650 0.5408 40 1 4.9763 6.5504 1.9384 41 1 3.6581 10.8698 3.6927 42 1 2.1934 9.8920 3.4341 43 1 1.5596 11.6219 6.6233 44 1 5.8572 9.7048 3.4779 45 1 5.9174 8.2742 2.4206 46 1 5.1098 9.6455 0.5190 47 1 5.0496 11.0761 1.5764 48 1 1.3342 4.5113 0.0095 49 1 0.2129 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271627578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:37 Heat of formation + Delta-G solvation = -37.843455 kcal Electronic energy + Delta-G solvation = -29374.649080 eV Core-core repulsion = 25301.472763 eV Total energy + Delta-G solvation = -4073.176317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.17463 -40.69563 -39.08081 -37.98197 -36.86978 -36.46376 -34.84176 -32.51918 -32.07483 -31.99599 -29.91287 -29.36206 -28.05939 -27.04862 -25.27588 -24.43804 -23.96832 -22.97821 -21.22652 -19.99326 -19.09307 -18.78137 -18.31513 -18.00237 -17.46389 -17.13455 -16.71524 -16.63497 -16.32538 -16.01080 -15.66902 -15.59990 -15.27141 -14.93415 -14.73139 -14.50380 -14.39195 -14.31864 -14.17140 -13.80804 -13.61407 -13.51008 -13.40409 -13.27404 -13.05252 -12.95699 -12.79468 -12.73326 -12.67094 -12.52569 -12.46004 -12.15826 -11.85971 -11.82057 -11.69673 -11.66830 -11.62010 -10.57959 -10.48735 -9.91975 -9.42671 -9.30927 -9.04970 -8.16593 -6.28638 0.41472 0.45894 1.39345 1.42084 1.52166 1.72897 1.88178 1.97365 2.28111 2.39659 2.45270 2.80275 3.09532 3.15689 3.35885 3.77948 3.86124 3.91549 3.99726 4.08984 4.15946 4.29990 4.37320 4.37708 4.42601 4.46623 4.50647 4.57852 4.62719 4.68733 4.72430 4.78181 4.87730 4.96646 5.06368 5.09390 5.13071 5.16520 5.33174 5.37275 5.44050 5.48336 5.62222 5.64820 5.84493 5.90722 6.12357 6.15578 6.37260 6.45428 6.63705 6.79653 6.87085 7.37194 7.59779 8.90170 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008753 B = 0.002642 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.999729 B =10594.311458 C =12999.370031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.110 3.890 4 C -0.164 4.164 5 C -0.072 4.072 6 C -0.133 4.133 7 C 0.133 3.867 8 H 0.069 0.931 9 C -0.133 4.133 10 N -0.680 5.680 11 C 0.050 3.950 12 C 0.501 3.499 13 O -0.578 6.578 14 N -0.600 5.600 15 C 0.260 3.740 16 C -0.536 4.536 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.286 1.286 24 C 0.114 3.886 25 C -0.038 4.038 26 C 0.247 3.753 27 N -0.490 5.490 28 C -0.069 4.069 29 C -0.216 4.216 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.343 0.657 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.137 0.863 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -17.573 -15.800 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.065 3.935 4 C -0.183 4.183 5 C -0.090 4.090 6 C -0.133 4.133 7 C 0.024 3.976 8 H 0.087 0.913 9 C -0.190 4.190 10 N -0.313 5.313 11 C -0.082 4.082 12 C 0.289 3.711 13 O -0.457 6.457 14 N -0.331 5.331 15 C 0.139 3.861 16 C -0.575 4.575 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.011 4.011 25 C -0.080 4.080 26 C -0.070 4.070 27 N -0.168 5.168 28 C -0.088 4.088 29 C -0.235 4.235 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.155 0.845 47 H 0.136 0.864 48 H 0.144 0.856 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.837 -17.053 -16.408 24.155 hybrid contribution -0.743 -0.251 2.006 2.154 sum 4.094 -17.304 -14.402 22.883 Atomic orbital electron populations 1.23298 0.76769 1.05441 1.01987 1.86024 1.23182 1.26995 1.88773 1.19293 0.92981 0.84392 0.96805 1.20637 0.91370 0.99362 1.06893 1.21085 1.00859 0.90326 0.96772 1.19950 0.93720 0.95091 1.04575 1.20441 0.95305 0.87252 0.94618 0.91270 1.21787 1.02137 1.01162 0.93963 1.60310 1.32722 1.14639 1.23636 1.21989 0.94011 0.93708 0.98478 1.21204 0.87504 0.81746 0.80619 1.90670 1.18762 1.72869 1.63354 1.48079 1.10829 1.27894 1.46300 1.18774 0.91155 0.88779 0.87401 1.21777 1.31928 1.10224 0.93569 0.92891 1.25721 0.94821 0.95170 1.03187 1.70033 1.34279 1.18258 1.34096 0.85522 0.77702 0.78536 0.79972 1.19217 1.19945 1.21173 1.21512 0.81291 1.00955 0.97321 1.19843 0.82517 1.04201 1.01392 1.29068 0.94728 0.91630 0.91615 1.81177 1.14144 1.10709 1.10730 1.20970 0.94707 0.97228 0.95850 1.21430 1.00836 0.92234 1.08994 0.91876 0.86223 0.92356 0.84134 0.83048 0.93195 0.91471 0.91273 0.83847 0.85327 0.90323 0.94889 0.97937 0.92634 0.89974 0.87515 0.84487 0.86366 0.85574 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -6.61 10.50 -92.34 -0.97 -7.58 16 3 C 0.11 2.31 6.69 22.51 0.15 2.46 16 4 C -0.16 -3.08 9.99 22.36 0.22 -2.85 16 5 C -0.07 -1.22 9.66 22.25 0.22 -1.01 16 6 C -0.13 -2.57 4.72 -19.85 -0.09 -2.66 16 7 C 0.13 2.33 2.82 44.16 0.12 2.45 16 8 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 9 C -0.13 -2.06 9.39 71.98 0.68 -1.38 16 10 N -0.68 -16.11 5.31 -499.45 -2.65 -18.76 16 11 C 0.05 1.11 4.52 85.56 0.39 1.49 16 12 C 0.50 17.54 7.71 87.66 0.68 18.21 16 13 O -0.58 -26.97 15.78 -3.03 -0.05 -27.02 16 14 N -0.60 -20.90 2.46 -826.16 -2.03 -22.93 16 15 C 0.26 12.45 5.16 85.64 0.44 12.90 16 16 C -0.54 -28.74 9.39 25.60 0.24 -28.50 16 17 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.93 -53.74 13.29 21.45 0.28 -53.46 16 20 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 24 C 0.11 2.65 5.17 86.38 0.45 3.10 16 25 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 26 C 0.25 5.13 15.43 89.47 1.38 6.51 16 27 N -0.49 -13.13 18.53 19.99 0.37 -12.76 16 28 C -0.07 -1.51 8.99 22.25 0.20 -1.31 16 29 C -0.22 -4.48 9.04 22.37 0.20 -4.27 16 30 H 0.06 0.68 7.66 -2.38 -0.02 0.66 16 31 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 1.75 8.03 -2.91 -0.02 1.72 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.34 9.58 7.68 -89.69 -0.69 8.89 16 39 H 0.13 2.01 6.48 -2.39 -0.02 1.99 16 40 H 0.08 1.43 7.31 -2.39 -0.02 1.41 16 41 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 42 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 43 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.08 2.15 8.07 -2.38 -0.02 2.13 16 45 H 0.11 1.82 6.44 -2.39 -0.02 1.80 16 46 H 0.14 1.62 7.22 -2.39 -0.02 1.60 16 47 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.13 2.99 7.70 -2.91 -0.02 2.97 16 49 H 0.14 2.39 6.30 -2.91 -0.02 2.38 16 Total: -1.00 -75.62 414.60 4.28 -71.34 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.28 Total: 18.56 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 7.02 Total: 7.00 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.02 Total: -107.91 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.02 Total: -34.60 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -75.62 4.28 -71.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271627578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.497 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds