Wall clock time and date at job start Wed Apr 1 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47619 * 2 1 4 4 N 1.46497 * 109.47410 * 120.00693 * 2 1 3 5 5 C 1.34775 * 119.99965 * 275.00216 * 4 2 1 6 6 O 1.21588 * 119.99751 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00176 * 179.72333 * 5 4 2 8 8 C 1.46497 * 120.00068 * 180.27098 * 7 5 4 9 9 C 1.52999 * 109.47059 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47314 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99506 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00521 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99382 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00489 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47188 * 89.99720 * 14 12 10 16 16 H 1.48500 * 109.47243 * 210.00006 * 14 12 10 17 17 H 1.48504 * 109.46851 * 329.99969 * 14 12 10 18 18 C 1.50708 * 109.46989 * 240.00455 * 2 1 3 19 19 C 1.38309 * 119.96389 * 279.72700 * 18 2 1 20 20 C 1.38261 * 120.13882 * 179.76611 * 19 18 2 21 21 C 1.38129 * 120.07201 * 0.50506 * 20 19 18 22 22 C 1.38859 * 119.92562 * 359.75043 * 21 20 19 23 23 N 1.39928 * 120.06372 * 180.02562 * 22 21 20 24 24 C 1.46756 * 124.35400 * 353.96235 * 23 22 21 25 25 C 1.54661 * 105.38489 * 162.85556 * 24 23 22 26 26 C 1.54631 * 101.68194 * 25.76855 * 25 24 23 27 27 C 1.34420 * 124.34631 * 174.26735 * 23 22 21 28 28 O 1.21295 * 124.93847 * 0.38184 * 27 23 22 29 29 C 1.38083 * 119.96340 * 99.99761 * 18 2 1 30 30 H 1.09000 * 109.47238 * 59.99149 * 1 2 3 31 31 H 1.09001 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46805 * 299.99652 * 1 2 3 33 33 H 0.97002 * 120.00304 * 94.99404 * 4 2 1 34 34 H 0.97002 * 120.00036 * 0.27538 * 7 5 4 35 35 H 1.09004 * 109.47101 * 299.99963 * 8 7 5 36 36 H 1.08994 * 109.47390 * 59.99888 * 8 7 5 37 37 H 1.09004 * 109.47048 * 299.99890 * 9 8 7 38 38 H 1.08993 * 109.47625 * 59.99987 * 9 8 7 39 39 H 0.96998 * 119.99380 * 179.97438 * 13 12 10 40 40 H 1.08002 * 119.92556 * 0.02562 * 19 18 2 41 41 H 1.08002 * 119.96110 * 180.25431 * 20 19 18 42 42 H 1.07997 * 120.03654 * 179.72300 * 21 20 19 43 43 H 1.08998 * 110.24857 * 281.98820 * 24 23 22 44 44 H 1.09000 * 110.24326 * 43.98722 * 24 23 22 45 45 H 1.08997 * 111.19746 * 267.59564 * 25 24 23 46 46 H 1.09000 * 110.82220 * 143.77485 * 25 24 23 47 47 H 1.09003 * 110.48670 * 216.30632 * 26 25 24 48 48 H 1.09001 * 110.48781 * 93.66400 * 26 25 24 49 49 H 1.07997 * 120.03848 * 0.02562 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1470 -0.0185 2.3571 6 8 1.8582 1.1613 2.4117 7 7 2.5911 -0.6553 3.4588 8 6 2.7253 0.0739 4.7223 9 6 3.2451 -0.8736 5.8053 10 6 3.3838 -0.1233 7.1049 11 1 3.1273 0.9247 7.1534 12 6 3.8381 -0.7746 8.2320 13 7 4.1509 -2.0507 8.1727 14 14 4.0094 0.1552 9.8430 15 1 2.7382 0.0633 10.6051 16 1 5.1102 -0.4392 10.6430 17 1 4.3159 1.5807 9.5615 18 6 2.0323 -0.7104 -1.2306 19 6 2.0717 -2.0925 -1.2627 20 6 2.5273 -2.7480 -2.3915 21 6 2.9545 -2.0237 -3.4874 22 6 2.9212 -0.6359 -3.4563 23 7 3.3528 0.1007 -4.5650 24 6 3.9751 -0.4859 -5.7576 25 6 3.8721 0.6025 -6.8516 26 6 3.8100 1.8940 -6.0035 27 6 3.2560 1.4371 -4.6720 28 8 2.7915 2.1700 -3.8244 29 6 2.4579 0.0195 -2.3227 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2490 -1.6319 1.1524 34 1 2.8218 -1.5965 3.4152 35 1 3.4273 0.8979 4.5935 36 1 1.7535 0.4678 5.0195 37 1 2.5434 -1.6978 5.9343 38 1 4.2170 -1.2671 5.5079 39 1 4.4709 -2.5089 8.9655 40 1 1.7418 -2.6610 -0.4056 41 1 2.5529 -3.8275 -2.4150 42 1 3.3145 -2.5363 -4.3672 43 1 5.0193 -0.7268 -5.5585 44 1 3.4329 -1.3802 -6.0648 45 1 2.9654 0.4811 -7.4442 46 1 4.7565 0.5964 -7.4887 47 1 3.1425 2.6218 -6.4650 48 1 4.8071 2.3158 -5.8772 49 1 2.4315 1.0988 -2.2953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273126314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:43 Heat of formation + Delta-G solvation = -41.628883 kcal Electronic energy + Delta-G solvation = -29073.261727 eV Core-core repulsion = 24999.921262 eV Total energy + Delta-G solvation = -4073.340465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50529 -39.93924 -38.88341 -37.11675 -35.77178 -34.56635 -33.36927 -32.83711 -31.69316 -29.91975 -29.24472 -28.81875 -28.18179 -24.85959 -24.11183 -23.55142 -22.65173 -21.15265 -20.90549 -20.47447 -19.60645 -18.35304 -17.63657 -17.26237 -16.64062 -16.36569 -16.13186 -15.59695 -15.15373 -15.05687 -14.57010 -14.47778 -14.27794 -14.18503 -14.10003 -13.82980 -13.61928 -13.56413 -13.39039 -13.22798 -12.92831 -12.49825 -12.33273 -12.23712 -12.09168 -12.00852 -11.69891 -11.57935 -11.14053 -11.00844 -10.96930 -10.59452 -10.58389 -10.26605 -10.01163 -9.85875 -9.50952 -9.22526 -9.13477 -8.90895 -8.44246 -8.26501 -8.18640 -6.05452 -4.07694 0.91972 1.10211 2.15483 2.31359 3.10451 3.32666 3.38556 3.43590 3.54147 3.68118 3.69129 3.78818 4.16244 4.33197 4.42078 4.43435 4.62863 4.73958 4.75303 4.85089 4.89728 4.99676 5.05947 5.10858 5.15776 5.23619 5.31416 5.31676 5.35907 5.40846 5.62328 5.74602 5.86025 5.90950 6.10167 6.14751 6.24908 6.32204 6.39872 6.46354 6.64103 6.73861 6.77612 6.84202 7.07791 7.31605 7.59722 7.62194 7.68514 7.94230 8.30890 8.51200 8.97527 9.08295 9.56782 11.06253 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.001732 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.716599 B =16160.905719 C =16429.552618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.202 3.798 3 H 0.097 0.903 4 N -0.747 5.747 5 C 0.700 3.300 6 O -0.596 6.596 7 N -0.739 5.739 8 C 0.140 3.860 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.056 4.056 19 C -0.137 4.137 20 C -0.088 4.088 21 C -0.160 4.160 22 C 0.165 3.835 23 N -0.561 5.561 24 C 0.095 3.905 25 C -0.131 4.131 26 C -0.154 4.154 27 C 0.512 3.488 28 O -0.504 6.504 29 C -0.144 4.144 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.392 0.608 34 H 0.392 0.608 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -2.650 -35.907 36.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.097 3.903 3 H 0.115 0.885 4 N -0.405 5.405 5 C 0.400 3.600 6 O -0.475 6.475 7 N -0.392 5.392 8 C 0.018 3.982 9 C -0.025 4.025 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.058 4.058 19 C -0.156 4.156 20 C -0.106 4.106 21 C -0.181 4.181 22 C 0.072 3.928 23 N -0.285 5.285 24 C -0.028 4.028 25 C -0.169 4.169 26 C -0.194 4.194 27 C 0.302 3.698 28 O -0.379 6.379 29 C -0.164 4.164 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.225 0.775 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.764 -1.252 -35.262 35.328 hybrid contribution 0.442 -0.742 0.810 1.184 sum -1.322 -1.994 -34.452 34.535 Atomic orbital electron populations 1.22172 0.94348 1.02206 1.02800 1.19533 0.93933 0.96583 0.80291 0.88488 1.45275 1.72831 1.13474 1.08882 1.16046 0.78525 0.85181 0.80293 1.90888 1.57452 1.14444 1.84701 1.45525 1.70075 1.13885 1.09750 1.21579 1.00395 0.95606 0.80660 1.19329 0.96597 0.94629 0.91952 1.21065 1.44253 0.96651 0.93848 0.92213 1.24997 0.95234 0.94936 0.99187 1.69964 1.44792 1.09151 1.29486 0.86506 0.77725 0.80073 0.83215 1.20583 1.21214 1.19726 1.19877 0.97270 0.93669 0.94965 1.20941 1.02132 0.93766 0.98773 1.20891 0.97468 0.99778 0.92495 1.20733 1.05782 0.91410 1.00172 1.17701 0.97806 0.90761 0.86542 1.45806 1.57953 1.07721 1.16990 1.22307 0.98952 0.97731 0.83766 1.22656 1.04514 0.92859 0.96860 1.22357 1.04303 0.99383 0.93320 1.21146 0.77991 0.81373 0.89338 1.90686 1.44214 1.57775 1.45181 1.21428 1.00973 1.02581 0.91451 0.91758 0.92439 0.91224 0.77291 0.77468 0.92819 0.92788 0.95969 0.95975 0.92919 0.85794 0.85393 0.85810 0.89959 0.89463 0.89519 0.88530 0.87396 0.87195 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.46 37.15 0.35 -1.58 16 2 C 0.20 2.71 2.78 -69.08 -0.19 2.51 16 3 H 0.10 1.54 7.43 -51.93 -0.39 1.15 16 4 N -0.75 -10.50 5.03 -59.82 -0.30 -10.80 16 5 C 0.70 13.02 8.53 -86.92 -0.74 12.28 16 6 O -0.60 -13.47 16.01 5.29 0.08 -13.39 16 7 N -0.74 -13.75 5.56 -65.23 -0.36 -14.11 16 8 C 0.14 3.14 5.61 -4.04 -0.02 3.12 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 10 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 11 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.06 -0.65 4.95 -104.65 -0.52 -1.17 16 19 C -0.14 -1.30 9.06 -39.55 -0.36 -1.66 16 20 C -0.09 -0.71 10.04 -39.61 -0.40 -1.10 16 21 C -0.16 -1.29 9.42 -39.39 -0.37 -1.66 16 22 C 0.17 1.67 6.60 -83.69 -0.55 1.12 16 23 N -0.56 -4.60 3.14 -112.16 -0.35 -4.95 16 24 C 0.09 0.35 6.52 -3.03 -0.02 0.33 16 25 C -0.13 -0.25 7.19 -25.00 -0.18 -0.43 16 26 C -0.15 -0.68 6.86 -26.74 -0.18 -0.86 16 27 C 0.51 4.83 7.92 -10.86 -0.09 4.74 16 28 O -0.50 -6.90 14.81 5.54 0.08 -6.81 16 29 C -0.14 -1.76 8.91 -39.40 -0.35 -2.11 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.39 4.43 6.86 -40.82 -0.28 4.15 16 34 H 0.39 6.27 8.49 -40.82 -0.35 5.92 16 35 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.12 1.00 6.89 -52.49 -0.36 0.64 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.66 6.74 -52.49 -0.35 0.31 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.21 7.23 -51.93 -0.38 -0.17 16 45 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 47 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.16 2.22 5.23 -52.49 -0.27 1.95 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -36.49 402.88 -10.65 -47.14 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.42 Total: 5.65 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.17 Total: 0.21 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.28 Total: -55.60 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.49 -10.65 -47.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273126314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.511 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds