Wall clock time and date at job start Wed Apr 1 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47619 * 2 1 4 4 N 1.46497 * 109.47410 * 120.00693 * 2 1 3 5 5 C 1.34775 * 119.99965 * 275.00216 * 4 2 1 6 6 O 1.21588 * 119.99751 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00176 * 179.72333 * 5 4 2 8 8 C 1.46497 * 120.00068 * 180.27098 * 7 5 4 9 9 C 1.52999 * 109.47059 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47314 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99506 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00521 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99382 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00489 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47188 * 89.99720 * 14 12 10 16 16 H 1.48500 * 109.47243 * 210.00006 * 14 12 10 17 17 H 1.48504 * 109.46851 * 329.99969 * 14 12 10 18 18 C 1.50708 * 109.46989 * 240.00455 * 2 1 3 19 19 C 1.38309 * 119.96389 * 279.72700 * 18 2 1 20 20 C 1.38261 * 120.13882 * 179.76611 * 19 18 2 21 21 C 1.38129 * 120.07201 * 0.50506 * 20 19 18 22 22 C 1.38859 * 119.92562 * 359.75043 * 21 20 19 23 23 N 1.39928 * 120.06372 * 180.02562 * 22 21 20 24 24 C 1.46756 * 124.35400 * 353.96235 * 23 22 21 25 25 C 1.54661 * 105.38489 * 162.85556 * 24 23 22 26 26 C 1.54631 * 101.68194 * 25.76855 * 25 24 23 27 27 C 1.34420 * 124.34631 * 174.26735 * 23 22 21 28 28 O 1.21295 * 124.93847 * 0.38184 * 27 23 22 29 29 C 1.38083 * 119.96340 * 99.99761 * 18 2 1 30 30 H 1.09000 * 109.47238 * 59.99149 * 1 2 3 31 31 H 1.09001 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46805 * 299.99652 * 1 2 3 33 33 H 0.97002 * 120.00304 * 94.99404 * 4 2 1 34 34 H 0.97002 * 120.00036 * 0.27538 * 7 5 4 35 35 H 1.09004 * 109.47101 * 299.99963 * 8 7 5 36 36 H 1.08994 * 109.47390 * 59.99888 * 8 7 5 37 37 H 1.09004 * 109.47048 * 299.99890 * 9 8 7 38 38 H 1.08993 * 109.47625 * 59.99987 * 9 8 7 39 39 H 0.96998 * 119.99380 * 179.97438 * 13 12 10 40 40 H 1.08002 * 119.92556 * 0.02562 * 19 18 2 41 41 H 1.08002 * 119.96110 * 180.25431 * 20 19 18 42 42 H 1.07997 * 120.03654 * 179.72300 * 21 20 19 43 43 H 1.08998 * 110.24857 * 281.98820 * 24 23 22 44 44 H 1.09000 * 110.24326 * 43.98722 * 24 23 22 45 45 H 1.08997 * 111.19746 * 267.59564 * 25 24 23 46 46 H 1.09000 * 110.82220 * 143.77485 * 25 24 23 47 47 H 1.09003 * 110.48670 * 216.30632 * 26 25 24 48 48 H 1.09001 * 110.48781 * 93.66400 * 26 25 24 49 49 H 1.07997 * 120.03848 * 0.02562 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1470 -0.0185 2.3571 6 8 1.8582 1.1613 2.4117 7 7 2.5911 -0.6553 3.4588 8 6 2.7253 0.0739 4.7223 9 6 3.2451 -0.8736 5.8053 10 6 3.3838 -0.1233 7.1049 11 1 3.1273 0.9247 7.1534 12 6 3.8381 -0.7746 8.2320 13 7 4.1509 -2.0507 8.1727 14 14 4.0094 0.1552 9.8430 15 1 2.7382 0.0633 10.6051 16 1 5.1102 -0.4392 10.6430 17 1 4.3159 1.5807 9.5615 18 6 2.0323 -0.7104 -1.2306 19 6 2.0717 -2.0925 -1.2627 20 6 2.5273 -2.7480 -2.3915 21 6 2.9545 -2.0237 -3.4874 22 6 2.9212 -0.6359 -3.4563 23 7 3.3528 0.1007 -4.5650 24 6 3.9751 -0.4859 -5.7576 25 6 3.8721 0.6025 -6.8516 26 6 3.8100 1.8940 -6.0035 27 6 3.2560 1.4371 -4.6720 28 8 2.7915 2.1700 -3.8244 29 6 2.4579 0.0195 -2.3227 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2490 -1.6319 1.1524 34 1 2.8218 -1.5965 3.4152 35 1 3.4273 0.8979 4.5935 36 1 1.7535 0.4678 5.0195 37 1 2.5434 -1.6978 5.9343 38 1 4.2170 -1.2671 5.5079 39 1 4.4709 -2.5089 8.9655 40 1 1.7418 -2.6610 -0.4056 41 1 2.5529 -3.8275 -2.4150 42 1 3.3145 -2.5363 -4.3672 43 1 5.0193 -0.7268 -5.5585 44 1 3.4329 -1.3802 -6.0648 45 1 2.9654 0.4811 -7.4442 46 1 4.7565 0.5964 -7.4887 47 1 3.1425 2.6218 -6.4650 48 1 4.8071 2.3158 -5.8772 49 1 2.4315 1.0988 -2.2953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273126314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:41 Heat of formation + Delta-G solvation = -66.262430 kcal Electronic energy + Delta-G solvation = -29074.329918 eV Core-core repulsion = 24999.921262 eV Total energy + Delta-G solvation = -4074.408656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.13022 -41.23836 -39.86505 -37.85246 -37.00559 -36.22920 -34.84819 -33.94598 -32.90942 -31.31238 -30.25487 -29.85020 -28.61056 -26.75381 -25.06058 -24.31054 -23.39846 -22.79578 -21.92409 -21.68715 -20.43797 -19.64110 -18.51219 -18.44239 -17.75423 -17.33465 -17.24302 -16.66752 -16.52439 -16.45841 -15.93521 -15.69011 -15.22641 -15.15602 -14.93086 -14.77318 -14.71325 -14.50996 -14.30204 -14.28078 -14.11512 -13.61173 -13.38490 -13.21672 -13.20852 -12.94701 -12.80231 -12.56435 -12.51625 -12.27800 -12.22678 -12.01108 -11.92502 -11.68968 -11.51438 -11.24348 -11.12365 -10.73313 -10.60558 -10.42661 -9.89121 -9.74772 -8.95355 -8.23941 -6.34038 0.17965 0.33180 1.41558 1.42390 1.48311 1.53751 1.69060 1.82587 2.13343 2.41378 2.79503 3.10699 3.23109 3.34974 3.47753 3.58945 3.92406 3.98824 4.09827 4.15977 4.18874 4.21598 4.33798 4.45742 4.46962 4.51254 4.54566 4.60297 4.64404 4.70947 4.81290 4.84950 4.87582 4.99951 5.06897 5.15089 5.16984 5.18315 5.29766 5.38001 5.40423 5.50160 5.52096 5.59293 5.65993 5.78715 5.99121 6.03512 6.07549 6.17326 6.78562 6.93969 7.10073 7.34977 7.56850 8.87971 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.001732 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.716599 B =16160.905719 C =16429.552618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.204 3.796 3 H 0.061 0.939 4 N -0.725 5.725 5 C 0.699 3.301 6 O -0.639 6.639 7 N -0.731 5.731 8 C 0.160 3.840 9 C 0.024 3.976 10 C -0.547 4.547 11 H 0.057 0.943 12 C 0.008 3.992 13 N -0.925 5.925 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.268 1.268 18 C -0.068 4.068 19 C -0.141 4.141 20 C -0.080 4.080 21 C -0.149 4.149 22 C 0.152 3.848 23 N -0.563 5.563 24 C 0.085 3.915 25 C -0.117 4.117 26 C -0.148 4.148 27 C 0.492 3.508 28 O -0.563 6.563 29 C -0.173 4.173 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.410 0.590 34 H 0.408 0.592 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.011 0.989 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.113 0.887 48 H 0.122 0.878 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -5.080 -38.194 38.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.099 3.901 3 H 0.079 0.921 4 N -0.382 5.382 5 C 0.399 3.601 6 O -0.521 6.521 7 N -0.386 5.386 8 C 0.036 3.964 9 C -0.013 4.013 10 C -0.586 4.586 11 H 0.076 0.924 12 C -0.191 4.191 13 N -0.565 5.565 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.193 1.193 18 C -0.069 4.069 19 C -0.160 4.160 20 C -0.099 4.099 21 C -0.169 4.169 22 C 0.058 3.942 23 N -0.286 5.286 24 C -0.035 4.035 25 C -0.154 4.154 26 C -0.188 4.188 27 C 0.284 3.716 28 O -0.442 6.442 29 C -0.194 4.194 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.114 0.886 46 H 0.144 0.856 47 H 0.132 0.868 48 H 0.140 0.860 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.004 -3.760 -37.625 37.826 hybrid contribution 0.232 -0.035 1.410 1.430 sum -0.771 -3.795 -36.215 36.422 Atomic orbital electron populations 1.22085 0.93425 1.03249 1.01935 1.19476 0.94644 0.95119 0.80890 0.92103 1.45061 1.71518 1.14084 1.07567 1.16149 0.78174 0.84701 0.81101 1.90863 1.59206 1.16545 1.85474 1.45193 1.70265 1.14422 1.08721 1.21083 0.99187 0.94687 0.81438 1.19130 0.95602 0.94457 0.92133 1.21459 1.44775 0.96958 0.95382 0.92433 1.25862 0.94634 0.95846 1.02786 1.70060 1.45189 1.10502 1.30711 0.85436 0.78077 0.78776 0.78698 1.19695 1.20374 1.19262 1.19636 0.98869 0.94679 0.93744 1.21152 1.02084 0.92558 1.00208 1.21323 0.95620 1.01470 0.91455 1.21141 1.04189 0.90254 1.01365 1.17916 0.97716 0.91986 0.86553 1.46113 1.57281 1.07582 1.17624 1.22711 0.99631 0.98810 0.82364 1.22715 1.06420 0.90126 0.96160 1.22428 1.04516 1.01006 0.90814 1.22188 0.77220 0.81746 0.90466 1.90657 1.46850 1.59274 1.47461 1.21290 1.03321 1.01380 0.93372 0.91052 0.90306 0.93618 0.75236 0.75693 0.94124 0.93796 0.97057 0.97242 0.92529 0.84174 0.81925 0.82298 0.88595 0.87442 0.88616 0.85573 0.86847 0.86008 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.46 71.98 0.68 -3.13 16 2 C 0.20 5.79 2.78 44.25 0.12 5.91 16 3 H 0.06 2.17 7.43 -2.39 -0.02 2.15 16 4 N -0.72 -20.66 5.03 -461.42 -2.32 -22.98 16 5 C 0.70 26.77 8.53 179.05 1.53 28.30 16 6 O -0.64 -30.35 16.01 -3.99 -0.06 -30.41 16 7 N -0.73 -27.59 5.56 -478.54 -2.66 -30.25 16 8 C 0.16 7.37 5.61 86.38 0.48 7.85 16 9 C 0.02 1.27 5.09 29.85 0.15 1.42 16 10 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 11 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 14 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 C -0.07 -1.61 4.95 -19.88 -0.10 -1.71 16 19 C -0.14 -2.40 9.06 22.29 0.20 -2.20 16 20 C -0.08 -1.01 10.04 22.25 0.22 -0.78 16 21 C -0.15 -1.93 9.42 22.39 0.21 -1.72 16 22 C 0.15 3.00 6.60 38.15 0.25 3.25 16 23 N -0.56 -8.82 3.14 -627.36 -1.97 -10.79 16 24 C 0.09 0.36 6.52 86.90 0.57 0.93 16 25 C -0.12 -0.07 7.19 31.72 0.23 0.16 16 26 C -0.15 -1.15 6.86 30.59 0.21 -0.94 16 27 C 0.49 9.73 7.92 87.90 0.70 10.43 16 28 O -0.56 -17.27 14.81 -3.08 -0.05 -17.32 16 29 C -0.17 -4.53 8.91 22.39 0.20 -4.33 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.41 8.82 6.86 -92.71 -0.64 8.18 16 34 H 0.41 12.88 8.49 -92.71 -0.79 12.09 16 35 H 0.04 1.96 8.14 -2.38 -0.02 1.95 16 36 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.14 1.86 6.89 -2.91 -0.02 1.84 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.16 0.90 6.74 -2.91 -0.02 0.88 16 43 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.11 0.04 7.23 -2.39 -0.02 0.02 16 45 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.12 4.07 5.23 -2.91 -0.02 4.05 16 Total: -1.00 -84.28 402.88 1.16 -83.11 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.44 Total: 23.49 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.35 Total: 13.14 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.66 Total: -118.56 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.11 Total: -47.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -84.28 1.16 -83.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273126314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.851 kcal (2) G-P(sol) polarization free energy of solvation -84.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds