Wall clock time and date at job start Wed Apr 1 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.20765 * 2 1 4 4 C 1.52983 * 109.21358 * 240.62777 * 2 1 3 5 5 N 1.47269 * 108.18754 * 192.93868 * 4 2 1 6 6 C 1.34778 * 121.35365 * 241.48408 * 5 4 2 7 7 O 1.21591 * 120.00006 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00318 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00067 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.47336 * 35.00314 * 9 8 6 11 11 C 1.53001 * 109.46801 * 154.99972 * 9 8 6 12 12 C 1.50701 * 109.47248 * 295.00082 * 11 9 8 13 13 H 1.07995 * 119.99909 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00030 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00276 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00065 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47435 * 89.99788 * 16 14 12 18 18 H 1.48500 * 109.47246 * 209.99954 * 16 14 12 19 19 H 1.48496 * 109.47148 * 329.99954 * 16 14 12 20 20 C 1.50699 * 109.47116 * 274.99791 * 9 8 6 21 21 C 1.38229 * 120.00230 * 320.27858 * 20 9 8 22 22 C 1.38238 * 120.00124 * 180.28369 * 21 20 9 23 23 C 1.38234 * 119.99675 * 359.45911 * 22 21 20 24 24 C 1.38234 * 120.00240 * 0.26327 * 23 22 21 25 25 C 1.38234 * 119.99755 * 140.00223 * 20 9 8 26 26 C 1.47048 * 117.29569 * 61.74730 * 5 4 2 27 27 C 1.50807 * 108.68771 * 316.91453 * 26 5 4 28 28 O 1.21280 * 118.47933 * 192.85855 * 27 26 5 29 29 N 1.33378 * 123.03140 * 13.07459 * 27 26 5 30 30 C 1.46504 * 117.70484 * 175.46208 * 29 27 26 31 31 H 1.09000 * 109.46556 * 179.38171 * 1 2 3 32 32 H 1.09000 * 109.46591 * 299.37153 * 1 2 3 33 33 H 1.08994 * 109.47204 * 59.37745 * 1 2 3 34 34 H 1.08999 * 109.72443 * 73.26556 * 4 2 1 35 35 H 1.09001 * 109.75756 * 312.63001 * 4 2 1 36 36 H 0.97003 * 119.99498 * 359.97438 * 8 6 5 37 37 H 1.09007 * 109.47410 * 55.00465 * 11 9 8 38 38 H 1.09000 * 109.47278 * 174.99992 * 11 9 8 39 39 H 0.96999 * 120.00231 * 179.97438 * 15 14 12 40 40 H 1.08004 * 120.00244 * 0.02562 * 21 20 9 41 41 H 1.08002 * 120.00519 * 179.74530 * 22 21 20 42 42 H 1.07999 * 120.00009 * 180.28390 * 23 22 21 43 43 H 1.07997 * 120.00460 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00274 * 0.02562 * 25 20 9 45 45 H 1.09004 * 109.55952 * 76.83638 * 26 5 4 46 46 H 1.08998 * 109.57152 * 197.18929 * 26 5 4 47 47 H 1.08994 * 109.47523 * 269.98320 * 30 29 27 48 48 H 1.09004 * 109.47033 * 29.97942 * 30 29 27 49 49 H 1.09001 * 109.47327 * 149.97788 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0335 -0.7086 -1.2589 5 7 3.4724 -0.9744 -1.0925 6 6 4.3854 -0.4407 -1.9281 7 8 4.0270 0.2762 -2.8424 8 7 5.6956 -0.7017 -1.7502 9 6 6.6879 -0.1221 -2.6588 10 1 6.3645 0.8734 -2.9628 11 6 8.0374 -0.0239 -1.9446 12 6 7.9298 0.9489 -0.7987 13 1 6.9927 1.4476 -0.6000 14 6 9.0276 1.2022 -0.0040 15 7 8.9339 2.0516 0.9957 16 14 10.6487 0.3401 -0.3482 17 1 11.4536 1.1574 -1.2913 18 1 11.3979 0.1691 0.9225 19 1 10.3833 -0.9915 -0.9493 20 6 6.8266 -0.9989 -3.8766 21 6 6.8110 -2.3747 -3.7431 22 6 6.9441 -3.1790 -4.8595 23 6 7.0817 -2.6075 -6.1106 24 6 7.0916 -1.2317 -6.2448 25 6 6.9638 -0.4274 -5.1278 26 6 3.8722 -1.8504 0.0188 27 6 3.0787 -1.4701 1.2435 28 8 3.4265 -1.9116 2.3182 29 7 2.0095 -0.6739 1.1988 30 6 1.2655 -0.4620 2.4429 31 1 -0.3632 -1.0276 -0.0111 32 1 -0.3632 0.5041 0.8956 33 1 -0.3633 0.5234 -0.8843 34 1 1.8756 -0.0704 -2.1283 35 1 1.4987 -1.6491 -1.3912 36 1 5.9816 -1.2734 -1.0205 37 1 8.3188 -1.0054 -1.5628 38 1 8.7955 0.3237 -2.6464 39 1 9.7062 2.2295 1.5550 40 1 6.6989 -2.8213 -2.7662 41 1 6.9361 -4.2539 -4.7548 42 1 7.1811 -3.2358 -6.9834 43 1 7.1986 -0.7852 -7.2223 44 1 6.9720 0.6475 -5.2325 45 1 3.6693 -2.8887 -0.2438 46 1 4.9362 -1.7239 0.2190 47 1 0.4868 -1.2191 2.5341 48 1 1.9464 -0.5373 3.2908 49 1 0.8099 0.5282 2.4297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281817673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:19 Heat of formation + Delta-G solvation = -18.997027 kcal Electronic energy + Delta-G solvation = -31270.920776 eV Core-core repulsion = 27198.561702 eV Total energy + Delta-G solvation = -4072.359074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94391 -39.65843 -38.66212 -36.98896 -35.42401 -34.95798 -32.69282 -31.88167 -31.00601 -30.53957 -29.33060 -28.54528 -27.55885 -25.46418 -24.44011 -22.75131 -22.33047 -21.77592 -20.61904 -19.87692 -18.79381 -18.03422 -17.48416 -17.07043 -16.38913 -16.12247 -15.94511 -15.79278 -15.13500 -14.92626 -14.68902 -14.35739 -14.28939 -13.78824 -13.56881 -13.41216 -13.33684 -13.11489 -12.95365 -12.73701 -12.58827 -12.45829 -12.40155 -12.18670 -12.03480 -11.82287 -11.62339 -11.48759 -11.32274 -11.10030 -10.74023 -10.65731 -10.31539 -10.16554 -9.85521 -9.73174 -9.33865 -8.93762 -8.75255 -8.63596 -8.60294 -8.40052 -8.29590 -6.10533 -4.10725 1.66712 1.70375 2.50791 2.56302 2.94440 3.26533 3.35050 3.36568 3.50441 4.02282 4.24105 4.24581 4.38463 4.49485 4.72820 4.86606 5.03174 5.13828 5.16256 5.17678 5.21915 5.23716 5.26596 5.28395 5.34553 5.43040 5.45640 5.58532 5.60610 5.79396 5.80762 5.82756 5.85044 5.98225 6.12739 6.22068 6.28668 6.36828 6.41674 6.72045 6.75556 6.77551 6.90924 6.96074 7.08725 7.28686 7.29900 7.36373 7.64749 8.01104 8.25425 8.43926 8.89969 8.95007 9.50012 11.02195 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008166 B = 0.004329 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.863857 B = 6465.829251 C = 8802.606176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.081 0.919 4 C 0.123 3.877 5 N -0.639 5.639 6 C 0.715 3.285 7 O -0.587 6.587 8 N -0.714 5.714 9 C 0.212 3.788 10 H 0.093 0.907 11 C -0.014 4.014 12 C -0.521 4.521 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.076 4.076 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.106 4.106 26 C 0.102 3.898 27 C 0.512 3.488 28 O -0.543 6.543 29 N -0.599 5.599 30 C 0.076 3.924 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.396 0.604 37 H 0.023 0.977 38 H 0.031 0.969 39 H 0.264 0.736 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.907 -9.158 -6.466 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.099 0.901 4 C -0.001 4.001 5 N -0.379 5.379 6 C 0.417 3.583 7 O -0.466 6.466 8 N -0.367 5.367 9 C 0.107 3.893 10 H 0.111 0.889 11 C -0.052 4.052 12 C -0.559 4.559 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.078 4.078 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.025 4.025 27 C 0.299 3.701 28 O -0.420 6.420 29 N -0.333 5.333 30 C -0.067 4.067 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.232 0.768 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.136 0.864 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.814 -8.752 -6.454 18.377 hybrid contribution 1.082 -0.608 0.364 1.293 sum -13.732 -9.359 -6.090 17.699 Atomic orbital electron populations 1.22168 0.93411 1.03005 1.03373 1.21466 0.95018 0.97277 0.84441 0.90070 1.21815 0.79410 1.01053 0.97773 1.47295 1.06416 1.52747 1.31417 1.15730 0.81122 0.79893 0.81534 1.90880 1.79618 1.42132 1.33919 1.45216 1.03789 1.53811 1.33898 1.19866 0.89588 0.94644 0.85240 0.88898 1.19887 0.90820 0.98097 0.96386 1.20986 0.99047 1.24394 1.11484 0.90689 1.24984 0.98653 0.94674 0.94737 1.69903 1.30765 1.34649 1.18158 0.86861 0.84271 0.80856 0.77804 1.20194 1.21346 1.18948 1.20596 0.97053 0.94504 0.95609 1.20906 1.00058 0.93292 0.98359 1.21047 1.01119 0.99270 0.92890 1.21014 1.02026 0.95009 0.97113 1.21060 1.00902 0.93783 0.98317 1.21038 0.99494 1.00050 0.91886 1.21852 1.01104 0.95755 0.83754 1.20342 0.80351 0.78474 0.90900 1.90753 1.67853 1.53937 1.29489 1.47215 1.28251 1.47417 1.10370 1.21715 0.96657 1.01025 0.87302 0.91768 0.91367 0.90570 0.86824 0.90762 0.76751 0.95876 0.95064 0.92623 0.86639 0.86717 0.86799 0.86519 0.85991 0.88055 0.86388 0.92651 0.90067 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.68 37.16 0.32 -0.75 16 2 C 0.12 1.24 3.50 -68.40 -0.24 1.00 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.35 5.83 -3.63 -0.02 1.33 16 5 N -0.64 -8.88 2.98 -179.67 -0.53 -9.42 16 6 C 0.72 12.59 8.30 -86.92 -0.72 11.87 16 7 O -0.59 -12.02 15.49 5.29 0.08 -11.94 16 8 N -0.71 -12.71 3.93 -59.82 -0.23 -12.94 16 9 C 0.21 4.12 2.12 -69.08 -0.15 3.98 16 10 H 0.09 2.01 7.44 -51.93 -0.39 1.63 16 11 C -0.01 -0.32 3.56 -27.88 -0.10 -0.41 16 12 C -0.52 -13.96 9.39 -34.44 -0.32 -14.29 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 16 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 20 C -0.08 -1.32 4.91 -104.63 -0.51 -1.84 16 21 C -0.11 -1.68 9.33 -39.58 -0.37 -2.05 16 22 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 23 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.11 -1.72 9.67 -39.58 -0.38 -2.10 16 26 C 0.10 1.31 6.46 -4.84 -0.03 1.28 16 27 C 0.51 7.42 7.59 -11.55 -0.09 7.33 16 28 O -0.54 -9.62 16.18 5.56 0.09 -9.53 16 29 N -0.60 -7.21 3.12 -174.93 -0.55 -7.76 16 30 C 0.08 0.76 9.03 59.85 0.54 1.31 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.41 6.48 -51.93 -0.34 0.08 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.11 1.33 7.06 -51.93 -0.37 0.96 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.40 6.58 6.23 -40.82 -0.25 6.33 16 37 H 0.02 0.50 7.20 -51.92 -0.37 0.13 16 38 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.12 1.67 7.71 -52.48 -0.40 1.27 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.12 1.62 5.94 -51.93 -0.31 1.31 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.99 7.10 -51.93 -0.37 0.62 16 49 H 0.07 0.57 6.91 -51.93 -0.36 0.21 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -34.72 394.78 -9.81 -44.53 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.36 Total: 8.83 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -3.36 Total: 2.17 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.54 Total: -56.31 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.17 Total: -21.47 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.72 -9.81 -44.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281817673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.537 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds