Wall clock time and date at job start Wed Apr 1 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.20765 * 2 1 4 4 C 1.52983 * 109.21358 * 240.62777 * 2 1 3 5 5 N 1.47269 * 108.18754 * 192.93868 * 4 2 1 6 6 C 1.34778 * 121.35365 * 241.48408 * 5 4 2 7 7 O 1.21591 * 120.00006 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00318 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00067 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.47336 * 35.00314 * 9 8 6 11 11 C 1.53001 * 109.46801 * 154.99972 * 9 8 6 12 12 C 1.50701 * 109.47248 * 295.00082 * 11 9 8 13 13 H 1.07995 * 119.99909 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00030 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00276 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00065 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47435 * 89.99788 * 16 14 12 18 18 H 1.48500 * 109.47246 * 209.99954 * 16 14 12 19 19 H 1.48496 * 109.47148 * 329.99954 * 16 14 12 20 20 C 1.50699 * 109.47116 * 274.99791 * 9 8 6 21 21 C 1.38229 * 120.00230 * 320.27858 * 20 9 8 22 22 C 1.38238 * 120.00124 * 180.28369 * 21 20 9 23 23 C 1.38234 * 119.99675 * 359.45911 * 22 21 20 24 24 C 1.38234 * 120.00240 * 0.26327 * 23 22 21 25 25 C 1.38234 * 119.99755 * 140.00223 * 20 9 8 26 26 C 1.47048 * 117.29569 * 61.74730 * 5 4 2 27 27 C 1.50807 * 108.68771 * 316.91453 * 26 5 4 28 28 O 1.21280 * 118.47933 * 192.85855 * 27 26 5 29 29 N 1.33378 * 123.03140 * 13.07459 * 27 26 5 30 30 C 1.46504 * 117.70484 * 175.46208 * 29 27 26 31 31 H 1.09000 * 109.46556 * 179.38171 * 1 2 3 32 32 H 1.09000 * 109.46591 * 299.37153 * 1 2 3 33 33 H 1.08994 * 109.47204 * 59.37745 * 1 2 3 34 34 H 1.08999 * 109.72443 * 73.26556 * 4 2 1 35 35 H 1.09001 * 109.75756 * 312.63001 * 4 2 1 36 36 H 0.97003 * 119.99498 * 359.97438 * 8 6 5 37 37 H 1.09007 * 109.47410 * 55.00465 * 11 9 8 38 38 H 1.09000 * 109.47278 * 174.99992 * 11 9 8 39 39 H 0.96999 * 120.00231 * 179.97438 * 15 14 12 40 40 H 1.08004 * 120.00244 * 0.02562 * 21 20 9 41 41 H 1.08002 * 120.00519 * 179.74530 * 22 21 20 42 42 H 1.07999 * 120.00009 * 180.28390 * 23 22 21 43 43 H 1.07997 * 120.00460 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00274 * 0.02562 * 25 20 9 45 45 H 1.09004 * 109.55952 * 76.83638 * 26 5 4 46 46 H 1.08998 * 109.57152 * 197.18929 * 26 5 4 47 47 H 1.08994 * 109.47523 * 269.98320 * 30 29 27 48 48 H 1.09004 * 109.47033 * 29.97942 * 30 29 27 49 49 H 1.09001 * 109.47327 * 149.97788 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0335 -0.7086 -1.2589 5 7 3.4724 -0.9744 -1.0925 6 6 4.3854 -0.4407 -1.9281 7 8 4.0270 0.2762 -2.8424 8 7 5.6956 -0.7017 -1.7502 9 6 6.6879 -0.1221 -2.6588 10 1 6.3645 0.8734 -2.9628 11 6 8.0374 -0.0239 -1.9446 12 6 7.9298 0.9489 -0.7987 13 1 6.9927 1.4476 -0.6000 14 6 9.0276 1.2022 -0.0040 15 7 8.9339 2.0516 0.9957 16 14 10.6487 0.3401 -0.3482 17 1 11.4536 1.1574 -1.2913 18 1 11.3979 0.1691 0.9225 19 1 10.3833 -0.9915 -0.9493 20 6 6.8266 -0.9989 -3.8766 21 6 6.8110 -2.3747 -3.7431 22 6 6.9441 -3.1790 -4.8595 23 6 7.0817 -2.6075 -6.1106 24 6 7.0916 -1.2317 -6.2448 25 6 6.9638 -0.4274 -5.1278 26 6 3.8722 -1.8504 0.0188 27 6 3.0787 -1.4701 1.2435 28 8 3.4265 -1.9116 2.3182 29 7 2.0095 -0.6739 1.1988 30 6 1.2655 -0.4620 2.4429 31 1 -0.3632 -1.0276 -0.0111 32 1 -0.3632 0.5041 0.8956 33 1 -0.3633 0.5234 -0.8843 34 1 1.8756 -0.0704 -2.1283 35 1 1.4987 -1.6491 -1.3912 36 1 5.9816 -1.2734 -1.0205 37 1 8.3188 -1.0054 -1.5628 38 1 8.7955 0.3237 -2.6464 39 1 9.7062 2.2295 1.5550 40 1 6.6989 -2.8213 -2.7662 41 1 6.9361 -4.2539 -4.7548 42 1 7.1811 -3.2358 -6.9834 43 1 7.1986 -0.7852 -7.2223 44 1 6.9720 0.6475 -5.2325 45 1 3.6693 -2.8887 -0.2438 46 1 4.9362 -1.7239 0.2190 47 1 0.4868 -1.2191 2.5341 48 1 1.9464 -0.5373 3.2908 49 1 0.8099 0.5282 2.4297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281817673.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:18 Heat of formation + Delta-G solvation = -41.304076 kcal Electronic energy + Delta-G solvation = -31271.888082 eV Core-core repulsion = 27198.561702 eV Total energy + Delta-G solvation = -4073.326381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.09195 -40.93435 -39.86127 -38.09027 -36.85721 -36.20453 -34.70126 -32.99150 -32.19035 -31.65997 -30.96787 -29.63407 -28.45316 -26.89013 -25.67223 -23.67142 -23.57976 -23.24721 -21.96019 -21.24194 -19.96431 -19.22833 -19.02816 -18.56249 -17.62453 -17.20336 -17.08545 -17.01613 -16.44077 -16.23679 -16.07262 -15.81007 -15.51896 -15.10403 -14.75110 -14.72917 -14.40956 -14.26030 -14.14582 -14.12800 -13.79558 -13.66608 -13.53791 -13.23957 -13.13513 -12.99952 -12.86122 -12.56669 -12.44519 -12.39538 -12.29718 -11.91729 -11.75432 -11.72504 -11.59709 -11.42981 -11.11926 -10.78532 -10.20118 -9.89297 -9.73542 -9.62141 -9.50445 -8.28897 -6.33807 0.51545 0.58604 1.36107 1.37216 1.37741 1.43012 1.49055 1.89227 2.14838 2.34958 2.78995 3.01966 3.08999 3.24160 3.62504 3.89382 3.92985 3.97978 4.05150 4.11068 4.23089 4.25051 4.33871 4.36189 4.41366 4.51857 4.55923 4.59440 4.68642 4.75045 4.78428 4.83130 4.85511 5.00483 5.01938 5.14998 5.16227 5.20174 5.21486 5.26429 5.41503 5.54026 5.57617 5.67153 5.67256 5.71542 5.93105 6.20306 6.24659 6.25736 6.72826 6.84109 6.95866 7.30411 7.50914 8.87528 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008166 B = 0.004329 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.863857 B = 6465.829251 C = 8802.606176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.061 0.939 4 C 0.120 3.880 5 N -0.633 5.633 6 C 0.712 3.288 7 O -0.621 6.621 8 N -0.714 5.714 9 C 0.223 3.777 10 H 0.057 0.943 11 C -0.005 4.005 12 C -0.518 4.518 13 H 0.028 0.972 14 C 0.010 3.990 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.241 1.241 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.128 4.128 26 C 0.104 3.896 27 C 0.504 3.496 28 O -0.584 6.584 29 N -0.597 5.597 30 C 0.072 3.928 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.401 0.599 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -12.127 -8.524 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.079 0.921 4 C -0.003 4.003 5 N -0.372 5.372 6 C 0.414 3.586 7 O -0.502 6.502 8 N -0.368 5.368 9 C 0.117 3.883 10 H 0.076 0.924 11 C -0.043 4.043 12 C -0.556 4.556 13 H 0.047 0.953 14 C -0.187 4.187 15 N -0.589 5.589 16 Si 0.768 3.232 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.164 1.164 20 C -0.100 4.100 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.021 4.021 27 C 0.292 3.708 28 O -0.464 6.464 29 N -0.328 5.328 30 C -0.069 4.069 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.238 0.762 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.132 0.868 45 H 0.154 0.846 46 H 0.123 0.877 47 H 0.096 0.904 48 H 0.074 0.926 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.505 -11.728 -8.520 21.226 hybrid contribution 1.151 0.388 0.982 1.562 sum -14.353 -11.339 -7.538 19.785 Atomic orbital electron populations 1.22126 0.89966 1.04233 1.04610 1.21563 0.97587 0.95710 0.83322 0.92086 1.22089 0.77726 1.02602 0.97866 1.47312 1.07122 1.52178 1.30627 1.15844 0.81307 0.79736 0.81750 1.90846 1.80142 1.43642 1.35594 1.45122 1.03955 1.53806 1.33929 1.19441 0.88300 0.94089 0.86444 0.92446 1.19749 0.92750 0.97014 0.94805 1.21171 0.97123 1.24523 1.12742 0.95340 1.25917 1.02872 0.95498 0.94393 1.70071 1.32063 1.36976 1.19818 0.85742 0.79008 0.80679 0.77734 1.19504 1.21344 1.16377 1.20369 0.99784 0.95109 0.94712 1.21055 1.00352 0.92572 0.99669 1.21420 0.99673 1.00687 0.92339 1.21469 0.99905 0.94927 0.98200 1.21377 0.99835 0.94328 0.98541 1.21168 1.00708 1.00248 0.92588 1.21931 1.00166 0.97199 0.82845 1.20602 0.80877 0.78674 0.90692 1.90732 1.69086 1.55860 1.30749 1.47380 1.27592 1.46187 1.11680 1.21863 0.96383 1.03159 0.85543 0.90484 0.90349 0.89156 0.87612 0.87595 0.76202 0.94605 0.94875 0.92615 0.86065 0.83666 0.83289 0.83955 0.86809 0.84588 0.87736 0.90360 0.92584 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.68 71.98 0.62 -1.00 16 2 C 0.12 2.36 3.50 45.15 0.16 2.52 16 3 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.12 2.50 5.83 86.23 0.50 3.01 16 5 N -0.63 -17.67 2.98 -840.62 -2.50 -20.17 16 6 C 0.71 25.95 8.30 179.05 1.49 27.44 16 7 O -0.62 -26.56 15.49 -4.00 -0.06 -26.62 16 8 N -0.71 -26.49 3.93 -461.42 -1.81 -28.30 16 9 C 0.22 9.06 2.12 44.25 0.09 9.16 16 10 H 0.06 2.70 7.44 -2.39 -0.02 2.68 16 11 C -0.01 -0.24 3.56 29.85 0.11 -0.14 16 12 C -0.52 -29.03 9.39 25.60 0.24 -28.79 16 13 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 14 C 0.01 0.60 5.47 84.65 0.46 1.06 16 15 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 16 Si 0.94 43.48 27.47 68.60 1.88 45.36 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 20 C -0.10 -3.41 4.91 -19.87 -0.10 -3.51 16 21 C -0.12 -3.49 9.33 22.27 0.21 -3.28 16 22 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 23 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 24 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 25 C -0.13 -4.14 9.67 22.27 0.22 -3.92 16 26 C 0.10 2.67 6.46 85.56 0.55 3.22 16 27 C 0.50 14.68 7.59 87.91 0.67 15.35 16 28 O -0.58 -21.21 16.18 -3.03 -0.05 -21.26 16 29 N -0.60 -14.03 3.12 -826.54 -2.58 -16.60 16 30 C 0.07 1.40 9.03 127.77 1.15 2.55 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.72 6.48 -2.39 -0.02 0.70 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 2.44 7.06 -2.39 -0.02 2.42 16 35 H 0.11 1.59 8.09 -2.39 -0.02 1.57 16 36 H 0.40 13.81 6.23 -92.71 -0.58 13.23 16 37 H 0.04 1.54 7.20 -2.38 -0.02 1.52 16 38 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.12 3.32 7.71 -2.91 -0.02 3.30 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.11 3.69 8.04 -2.91 -0.02 3.66 16 45 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 46 H 0.10 2.97 5.94 -2.39 -0.01 2.96 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 1.39 7.10 -2.38 -0.02 1.38 16 49 H 0.09 1.35 6.91 -2.39 -0.02 1.33 16 Total: -1.00 -80.23 394.78 2.56 -77.68 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.33 Total: 33.65 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.05 Total: 15.44 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.59 Total: -124.25 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.11 Total: -47.88 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -80.23 2.56 -77.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281817673.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.372 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds