Wall clock time and date at job start Wed Apr 1 2020 03:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.21155 * 2 1 4 4 C 1.52509 * 109.29647 * 240.75440 * 2 1 3 5 5 N 1.47271 * 108.44153 * 193.05589 * 4 2 1 6 6 C 1.34776 * 121.35494 * 241.51741 * 5 4 2 7 7 O 1.21581 * 119.99811 * 359.71799 * 6 5 4 8 8 N 1.34778 * 120.00118 * 179.71699 * 6 5 4 9 9 C 1.46496 * 119.99890 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.47401 * 324.99797 * 9 8 6 11 11 C 1.53006 * 109.47070 * 204.99752 * 9 8 6 12 12 C 1.50699 * 109.46866 * 65.00087 * 11 9 8 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 9 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47325 * 59.99531 * 16 14 12 18 18 H 1.48496 * 109.47425 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47183 * 299.99726 * 16 14 12 20 20 C 1.50699 * 109.47405 * 85.00237 * 9 8 6 21 21 C 1.38239 * 120.00015 * 39.71846 * 20 9 8 22 22 C 1.38236 * 119.99909 * 179.81232 * 21 20 9 23 23 C 1.38228 * 120.00012 * 0.42506 * 22 21 20 24 24 C 1.38242 * 120.00167 * 359.81195 * 23 22 21 25 25 C 1.38228 * 120.00085 * 220.00223 * 20 9 8 26 26 C 1.47052 * 117.29005 * 61.24657 * 5 4 2 27 27 C 1.50439 * 108.89236 * 317.51238 * 26 5 4 28 28 O 1.21281 * 118.48819 * 192.68792 * 27 26 5 29 29 N 1.33380 * 123.01969 * 12.70576 * 27 26 5 30 30 C 1.46501 * 117.70241 * 175.65747 * 29 27 26 31 31 H 1.09000 * 109.47153 * 300.62109 * 1 2 3 32 32 H 1.09000 * 109.47222 * 60.61690 * 1 2 3 33 33 H 1.08997 * 109.47152 * 180.61822 * 1 2 3 34 34 H 1.08998 * 109.60090 * 73.30084 * 4 2 1 35 35 H 1.09002 * 109.59198 * 312.80519 * 4 2 1 36 36 H 0.97001 * 119.99750 * 0.02562 * 8 6 5 37 37 H 1.08993 * 109.46955 * 185.00306 * 11 9 8 38 38 H 1.09000 * 109.47050 * 305.00134 * 11 9 8 39 39 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.99847 * 0.02562 * 21 20 9 41 41 H 1.08001 * 119.99787 * 180.21446 * 22 21 20 42 42 H 1.08003 * 120.00241 * 179.78933 * 23 22 21 43 43 H 1.07997 * 119.99803 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00201 * 359.96987 * 25 20 9 45 45 H 1.09004 * 109.56735 * 77.33909 * 26 5 4 46 46 H 1.09002 * 109.56708 * 197.68504 * 26 5 4 47 47 H 1.09002 * 109.47423 * 0.02562 * 30 29 27 48 48 H 1.09007 * 109.46955 * 120.00018 * 30 29 27 49 49 H 1.08994 * 109.47610 * 240.00101 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0339 -0.7032 -1.2559 5 7 3.4724 -0.9737 -1.0930 6 6 4.3855 -0.4389 -1.9277 7 8 4.0272 0.2792 -2.8410 8 7 5.6957 -0.7001 -1.7499 9 6 6.6882 -0.1184 -2.6569 10 1 6.2728 -0.0632 -3.6630 11 6 7.9424 -0.9947 -2.6704 12 6 7.6075 -2.3419 -3.2569 13 1 6.6008 -2.5521 -3.5867 14 6 8.5860 -3.3064 -3.3717 15 7 9.8119 -3.0505 -2.9696 16 14 8.1712 -4.9759 -4.0994 17 1 7.6751 -4.8012 -5.4881 18 1 9.3883 -5.8266 -4.1124 19 1 7.1203 -5.6273 -3.2767 20 6 7.0486 1.2669 -2.1855 21 6 7.1926 1.5216 -0.8344 22 6 7.5269 2.7914 -0.4022 23 6 7.7087 3.8085 -1.3205 24 6 7.5599 3.5550 -2.6713 25 6 7.2294 2.2842 -3.1036 26 6 3.8724 -1.8461 0.0212 27 6 3.0782 -1.4714 1.2426 28 8 3.4256 -1.9143 2.3169 29 7 2.0094 -0.6747 1.1984 30 6 1.2650 -0.4641 2.4425 31 1 -0.3633 0.5234 0.8844 32 1 -0.3634 0.5042 -0.8955 33 1 -0.3633 -1.0276 0.0111 34 1 1.8763 -0.0613 -2.1226 35 1 1.4961 -1.6418 -1.3900 36 1 5.9815 -1.2733 -1.0214 37 1 8.7132 -0.5166 -3.2748 38 1 8.3072 -1.1227 -1.6512 39 1 10.5003 -3.7289 -3.0507 40 1 7.0472 0.7277 -0.1168 41 1 7.6428 2.9895 0.6531 42 1 7.9665 4.8014 -0.9827 43 1 7.7014 4.3497 -3.3886 44 1 7.1129 2.0862 -4.1590 45 1 3.6730 -2.8856 -0.2393 46 1 4.9357 -1.7161 0.2230 47 1 1.7366 -1.0271 3.2480 48 1 1.2671 0.5971 2.6920 49 1 0.2378 -0.8049 2.3136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281817676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:23 Heat of formation + Delta-G solvation = -22.892346 kcal Electronic energy + Delta-G solvation = -31296.594962 eV Core-core repulsion = 27224.066974 eV Total energy + Delta-G solvation = -4072.527988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03488 -39.63989 -38.60572 -37.08223 -35.35838 -34.96634 -32.77091 -31.93207 -30.92736 -30.43425 -28.91260 -28.55618 -27.57810 -25.37535 -24.45668 -22.83619 -22.28580 -21.94896 -20.66663 -19.83454 -18.82093 -18.05856 -17.55889 -16.80048 -16.20775 -16.15130 -16.02357 -15.71783 -15.21419 -14.81811 -14.67679 -14.55818 -14.27824 -13.77534 -13.57355 -13.50601 -13.39685 -13.00605 -12.86527 -12.71280 -12.54745 -12.41559 -12.28233 -12.10391 -12.09723 -11.75212 -11.54796 -11.48832 -11.12608 -10.92106 -10.72262 -10.63991 -10.48541 -10.36486 -9.78027 -9.73111 -9.31785 -9.01921 -8.77363 -8.52686 -8.45627 -8.34945 -8.17541 -6.08803 -4.12487 1.78245 1.81468 2.38205 2.51962 2.88933 3.28629 3.34216 3.36492 3.50087 4.08376 4.17522 4.29781 4.39751 4.45495 4.65653 4.79843 4.96253 5.14384 5.17983 5.22240 5.27044 5.27771 5.28308 5.32003 5.35661 5.38070 5.51350 5.53945 5.58725 5.68697 5.78187 5.91485 5.94694 6.04180 6.11033 6.28614 6.36925 6.44368 6.58217 6.85581 6.86015 6.88733 6.98503 7.14864 7.16982 7.41465 7.49810 7.63730 7.87587 7.89494 8.24519 8.29832 8.91750 8.93066 9.52561 11.01675 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007802 B = 0.004285 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.149343 B = 6532.245302 C = 8700.473683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.079 0.921 4 C 0.122 3.878 5 N -0.639 5.639 6 C 0.713 3.287 7 O -0.588 6.588 8 N -0.713 5.713 9 C 0.201 3.799 10 H 0.088 0.912 11 C 0.023 3.977 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.071 4.071 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.107 4.107 26 C 0.102 3.898 27 C 0.512 3.488 28 O -0.546 6.546 29 N -0.599 5.599 30 C 0.067 3.933 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.036 0.964 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 8.703 7.386 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.097 0.903 4 C -0.002 4.002 5 N -0.380 5.380 6 C 0.415 3.585 7 O -0.466 6.466 8 N -0.367 5.367 9 C 0.097 3.903 10 H 0.106 0.894 11 C -0.014 4.014 12 C -0.559 4.559 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.073 4.073 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.025 4.025 27 C 0.300 3.700 28 O -0.424 6.424 29 N -0.333 5.333 30 C -0.076 4.076 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.124 0.876 46 H 0.134 0.866 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.760 8.911 7.230 19.495 hybrid contribution 0.030 -1.225 0.019 1.226 sum -15.730 7.686 7.249 18.949 Atomic orbital electron populations 1.22139 0.93414 1.03078 1.03345 1.21348 0.95107 0.97072 0.84460 0.90308 1.21725 0.79606 1.01258 0.97656 1.47301 1.06395 1.52724 1.31534 1.15780 0.81196 0.79934 0.81592 1.90876 1.79652 1.42460 1.33644 1.45324 1.03755 1.52861 1.34735 1.20174 0.90207 0.87803 0.92165 0.89366 1.19403 0.90063 0.93573 0.98348 1.21080 0.95897 0.97458 1.41461 0.92431 1.24980 0.94972 0.98700 0.95410 1.69947 1.01526 1.34567 1.46961 0.86657 0.77649 0.83858 0.79834 1.20236 1.21319 1.20283 1.20579 0.96791 0.96422 0.93490 1.20884 0.99692 0.96452 0.95469 1.21033 1.00793 0.93448 0.99043 1.20987 1.02133 0.98693 0.93483 1.21038 1.00681 0.96753 0.95626 1.21007 0.99471 0.92448 0.99614 1.21765 1.00646 0.96499 0.83573 1.20355 0.80624 0.78080 0.90956 1.90739 1.67941 1.54109 1.29569 1.47227 1.28266 1.47338 1.10453 1.21797 0.96374 1.01896 0.87509 0.91433 0.90509 0.91651 0.86772 0.90668 0.76759 0.94561 0.95755 0.92793 0.86821 0.86834 0.86889 0.86622 0.86140 0.87588 0.86609 0.89082 0.92269 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.25 37.16 0.31 -0.66 16 2 C 0.12 1.13 3.54 -68.64 -0.24 0.89 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.12 1.30 5.81 -3.87 -0.02 1.28 16 5 N -0.64 -8.76 2.99 -180.17 -0.54 -9.30 16 6 C 0.71 12.49 8.30 -86.92 -0.72 11.77 16 7 O -0.59 -12.00 15.49 5.29 0.08 -11.91 16 8 N -0.71 -12.85 3.93 -59.82 -0.23 -13.08 16 9 C 0.20 4.05 2.12 -69.08 -0.15 3.91 16 10 H 0.09 1.94 7.44 -51.93 -0.39 1.55 16 11 C 0.02 0.56 4.50 -27.88 -0.13 0.43 16 12 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 16 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.07 -1.32 4.91 -104.63 -0.51 -1.84 16 21 C -0.11 -1.83 9.33 -39.58 -0.37 -2.19 16 22 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 23 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 24 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 25 C -0.11 -1.85 9.67 -39.59 -0.38 -2.23 16 26 C 0.10 1.28 6.44 -5.02 -0.03 1.25 16 27 C 0.51 6.74 7.58 -11.73 -0.09 6.65 16 28 O -0.55 -8.79 15.97 5.56 0.09 -8.70 16 29 N -0.60 -6.38 3.12 -175.37 -0.55 -6.93 16 30 C 0.07 0.58 9.36 59.85 0.56 1.14 16 31 H 0.07 0.35 6.90 -51.93 -0.36 -0.01 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.11 1.31 7.06 -51.93 -0.37 0.95 16 35 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.40 6.72 6.24 -40.82 -0.25 6.46 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.11 1.87 7.71 -52.49 -0.40 1.46 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 44 H 0.12 1.98 8.04 -52.48 -0.42 1.56 16 45 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.12 1.49 5.95 -51.93 -0.31 1.18 16 47 H 0.09 0.95 6.59 -51.93 -0.34 0.61 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.42 6.90 -51.93 -0.36 0.06 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -33.01 397.98 -10.20 -43.21 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.39 Total: 8.31 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -3.37 Total: 1.19 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.58 Total: -53.99 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.01 -10.20 -43.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281817676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.321 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds