Wall clock time and date at job start Wed Apr 1 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.21155 * 2 1 4 4 C 1.52509 * 109.29647 * 240.75440 * 2 1 3 5 5 N 1.47271 * 108.44153 * 193.05589 * 4 2 1 6 6 C 1.34776 * 121.35494 * 241.51741 * 5 4 2 7 7 O 1.21581 * 119.99811 * 359.71799 * 6 5 4 8 8 N 1.34778 * 120.00118 * 179.71699 * 6 5 4 9 9 C 1.46496 * 119.99890 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.47401 * 324.99797 * 9 8 6 11 11 C 1.53006 * 109.47070 * 204.99752 * 9 8 6 12 12 C 1.50699 * 109.46866 * 65.00087 * 11 9 8 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 9 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47325 * 59.99531 * 16 14 12 18 18 H 1.48496 * 109.47425 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47183 * 299.99726 * 16 14 12 20 20 C 1.50699 * 109.47405 * 85.00237 * 9 8 6 21 21 C 1.38239 * 120.00015 * 39.71846 * 20 9 8 22 22 C 1.38236 * 119.99909 * 179.81232 * 21 20 9 23 23 C 1.38228 * 120.00012 * 0.42506 * 22 21 20 24 24 C 1.38242 * 120.00167 * 359.81195 * 23 22 21 25 25 C 1.38228 * 120.00085 * 220.00223 * 20 9 8 26 26 C 1.47052 * 117.29005 * 61.24657 * 5 4 2 27 27 C 1.50439 * 108.89236 * 317.51238 * 26 5 4 28 28 O 1.21281 * 118.48819 * 192.68792 * 27 26 5 29 29 N 1.33380 * 123.01969 * 12.70576 * 27 26 5 30 30 C 1.46501 * 117.70241 * 175.65747 * 29 27 26 31 31 H 1.09000 * 109.47153 * 300.62109 * 1 2 3 32 32 H 1.09000 * 109.47222 * 60.61690 * 1 2 3 33 33 H 1.08997 * 109.47152 * 180.61822 * 1 2 3 34 34 H 1.08998 * 109.60090 * 73.30084 * 4 2 1 35 35 H 1.09002 * 109.59198 * 312.80519 * 4 2 1 36 36 H 0.97001 * 119.99750 * 0.02562 * 8 6 5 37 37 H 1.08993 * 109.46955 * 185.00306 * 11 9 8 38 38 H 1.09000 * 109.47050 * 305.00134 * 11 9 8 39 39 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.99847 * 0.02562 * 21 20 9 41 41 H 1.08001 * 119.99787 * 180.21446 * 22 21 20 42 42 H 1.08003 * 120.00241 * 179.78933 * 23 22 21 43 43 H 1.07997 * 119.99803 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00201 * 359.96987 * 25 20 9 45 45 H 1.09004 * 109.56735 * 77.33909 * 26 5 4 46 46 H 1.09002 * 109.56708 * 197.68504 * 26 5 4 47 47 H 1.09002 * 109.47423 * 0.02562 * 30 29 27 48 48 H 1.09007 * 109.46955 * 120.00018 * 30 29 27 49 49 H 1.08994 * 109.47610 * 240.00101 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0339 -0.7032 -1.2559 5 7 3.4724 -0.9737 -1.0930 6 6 4.3855 -0.4389 -1.9277 7 8 4.0272 0.2792 -2.8410 8 7 5.6957 -0.7001 -1.7499 9 6 6.6882 -0.1184 -2.6569 10 1 6.2728 -0.0632 -3.6630 11 6 7.9424 -0.9947 -2.6704 12 6 7.6075 -2.3419 -3.2569 13 1 6.6008 -2.5521 -3.5867 14 6 8.5860 -3.3064 -3.3717 15 7 9.8119 -3.0505 -2.9696 16 14 8.1712 -4.9759 -4.0994 17 1 7.6751 -4.8012 -5.4881 18 1 9.3883 -5.8266 -4.1124 19 1 7.1203 -5.6273 -3.2767 20 6 7.0486 1.2669 -2.1855 21 6 7.1926 1.5216 -0.8344 22 6 7.5269 2.7914 -0.4022 23 6 7.7087 3.8085 -1.3205 24 6 7.5599 3.5550 -2.6713 25 6 7.2294 2.2842 -3.1036 26 6 3.8724 -1.8461 0.0212 27 6 3.0782 -1.4714 1.2426 28 8 3.4256 -1.9143 2.3169 29 7 2.0094 -0.6747 1.1984 30 6 1.2650 -0.4641 2.4425 31 1 -0.3633 0.5234 0.8844 32 1 -0.3634 0.5042 -0.8955 33 1 -0.3633 -1.0276 0.0111 34 1 1.8763 -0.0613 -2.1226 35 1 1.4961 -1.6418 -1.3900 36 1 5.9815 -1.2733 -1.0214 37 1 8.7132 -0.5166 -3.2748 38 1 8.3072 -1.1227 -1.6512 39 1 10.5003 -3.7289 -3.0507 40 1 7.0472 0.7277 -0.1168 41 1 7.6428 2.9895 0.6531 42 1 7.9665 4.8014 -0.9827 43 1 7.7014 4.3497 -3.3886 44 1 7.1129 2.0862 -4.1590 45 1 3.6730 -2.8856 -0.2393 46 1 4.9357 -1.7161 0.2230 47 1 1.7366 -1.0271 3.2480 48 1 1.2671 0.5971 2.6920 49 1 0.2378 -0.8049 2.3136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281817676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:22 Heat of formation + Delta-G solvation = -42.451911 kcal Electronic energy + Delta-G solvation = -31297.443128 eV Core-core repulsion = 27224.066974 eV Total energy + Delta-G solvation = -4073.376154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.11445 -40.93332 -39.86979 -38.10202 -36.81940 -36.19736 -34.71659 -32.93892 -32.15300 -31.67906 -30.54966 -29.63293 -28.42752 -26.83364 -25.71198 -23.82547 -23.64436 -23.35636 -21.97826 -21.22131 -19.95570 -19.19530 -18.70054 -18.45475 -17.64887 -17.19301 -17.10043 -16.90091 -16.54901 -16.40446 -15.99336 -15.87594 -15.50913 -14.96759 -14.76501 -14.62798 -14.29918 -14.19873 -14.17011 -14.09386 -13.71574 -13.63422 -13.43589 -13.25720 -13.04080 -12.90354 -12.82518 -12.64832 -12.45020 -12.43176 -12.29271 -12.15448 -11.87802 -11.61313 -11.56806 -11.33525 -11.11131 -10.57342 -10.17742 -9.87333 -9.76282 -9.62793 -9.50428 -8.18778 -6.28935 0.50698 0.55728 1.34967 1.41056 1.42152 1.43262 1.50364 1.90617 2.12986 2.40964 2.79116 3.01890 3.16325 3.24429 3.63271 3.88201 3.97445 3.99410 4.03312 4.10265 4.20161 4.28613 4.31566 4.41112 4.47740 4.52245 4.59977 4.65101 4.70025 4.75649 4.79083 4.85179 4.87945 5.00599 5.12308 5.15284 5.19337 5.22387 5.26439 5.40764 5.44310 5.60634 5.61309 5.64104 5.71269 5.79419 5.95534 6.16230 6.21040 6.24255 6.83372 6.84568 6.95694 7.39885 7.51685 8.91785 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007802 B = 0.004285 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.149343 B = 6532.245302 C = 8700.473683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.071 0.929 4 C 0.116 3.884 5 N -0.633 5.633 6 C 0.713 3.287 7 O -0.620 6.620 8 N -0.713 5.713 9 C 0.218 3.782 10 H 0.063 0.937 11 C 0.037 3.963 12 C -0.528 4.528 13 H 0.055 0.945 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.097 4.097 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.129 4.129 26 C 0.101 3.899 27 C 0.511 3.489 28 O -0.581 6.581 29 N -0.595 5.595 30 C 0.065 3.935 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.263 0.737 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.959 9.667 8.139 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.089 0.911 4 C -0.007 4.007 5 N -0.372 5.372 6 C 0.414 3.586 7 O -0.501 6.501 8 N -0.367 5.367 9 C 0.113 3.887 10 H 0.082 0.918 11 C 0.000 4.000 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.098 4.098 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.025 4.025 27 C 0.299 3.701 28 O -0.462 6.462 29 N -0.326 5.326 30 C -0.077 4.077 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.237 0.763 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.127 0.873 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.845 9.883 8.001 21.912 hybrid contribution 0.630 -1.428 -0.200 1.573 sum -17.215 8.455 7.800 20.705 Atomic orbital electron populations 1.22114 0.90338 1.03979 1.04723 1.21407 0.97331 0.95955 0.82897 0.91057 1.22009 0.77778 1.02462 0.98437 1.47293 1.07091 1.52008 1.30781 1.15828 0.81180 0.79823 0.81744 1.90845 1.80109 1.43940 1.35173 1.45156 1.04010 1.53100 1.34450 1.19635 0.88769 0.88632 0.91672 0.91843 1.19141 0.91095 0.93356 0.96424 1.21349 0.95714 0.98450 1.41046 0.92693 1.25769 0.94796 1.02345 0.95807 1.70067 1.02481 1.35774 1.48289 0.85648 0.77623 0.79543 0.79108 1.19926 1.21040 1.19139 1.20472 0.99025 0.95674 0.94628 1.20986 1.00559 0.97725 0.94765 1.21391 0.99652 0.92608 1.00811 1.21448 1.00182 1.00087 0.92882 1.21399 0.99321 0.96289 0.96926 1.21180 1.00546 0.93600 0.99422 1.21820 1.00420 0.97013 0.83232 1.20306 0.81149 0.78399 0.90279 1.90727 1.69093 1.55851 1.30525 1.47345 1.27441 1.46095 1.11760 1.21951 0.97197 1.02660 0.85909 0.90011 0.89230 0.90949 0.87506 0.88534 0.76328 0.97466 0.97344 0.92770 0.87094 0.84132 0.83147 0.83633 0.86542 0.86113 0.87325 0.91022 0.90783 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.25 71.98 0.59 -0.73 16 2 C 0.13 2.07 3.54 44.99 0.16 2.23 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.12 2.33 5.81 86.07 0.50 2.83 16 5 N -0.63 -17.25 2.99 -842.21 -2.52 -19.76 16 6 C 0.71 25.60 8.30 179.05 1.49 27.09 16 7 O -0.62 -26.00 15.49 -3.97 -0.06 -26.06 16 8 N -0.71 -26.87 3.93 -461.42 -1.81 -28.69 16 9 C 0.22 9.33 2.12 44.25 0.09 9.42 16 10 H 0.06 2.98 7.44 -2.39 -0.02 2.97 16 11 C 0.04 1.88 4.50 29.85 0.13 2.01 16 12 C -0.53 -28.50 8.84 25.60 0.23 -28.27 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 14 C 0.01 0.64 5.46 84.65 0.46 1.10 16 15 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 16 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C -0.10 -3.72 4.91 -19.87 -0.10 -3.82 16 21 C -0.12 -4.23 9.33 22.27 0.21 -4.02 16 22 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 23 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 24 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 25 C -0.13 -4.55 9.67 22.27 0.22 -4.33 16 26 C 0.10 2.55 6.44 85.45 0.55 3.10 16 27 C 0.51 13.17 7.58 87.79 0.67 13.84 16 28 O -0.58 -18.78 15.97 -3.03 -0.05 -18.83 16 29 N -0.59 -11.71 3.12 -827.93 -2.58 -14.29 16 30 C 0.06 0.98 9.36 127.77 1.20 2.18 16 31 H 0.08 0.53 6.90 -2.39 -0.02 0.51 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 2.37 7.06 -2.39 -0.02 2.36 16 35 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.40 14.26 6.24 -92.71 -0.58 13.68 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.11 3.78 7.71 -2.91 -0.02 3.76 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 42 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.12 4.04 8.04 -2.91 -0.02 4.02 16 45 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 46 H 0.11 2.89 5.95 -2.39 -0.01 2.88 16 47 H 0.07 1.42 6.59 -2.39 -0.02 1.41 16 48 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.09 0.89 6.90 -2.39 -0.02 0.88 16 Total: -1.00 -73.77 397.98 2.74 -71.04 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.38 Total: 32.29 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.06 Total: 12.87 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -6.62 Total: -116.68 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.11 Total: -44.89 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.77 2.74 -71.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281817676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.587 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds