Wall clock time and date at job start Wed Apr 1 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.21705 * 2 1 4 4 C 1.52990 * 109.21827 * 119.38011 * 2 1 3 5 5 N 1.47274 * 108.18823 * 167.01139 * 4 2 1 6 6 C 1.34784 * 121.35023 * 118.47169 * 5 4 2 7 7 O 1.21582 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99551 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99649 * 175.40589 * 8 6 5 10 10 H 1.08997 * 109.47283 * 328.01560 * 9 8 6 11 11 C 1.53001 * 109.47043 * 88.01001 * 9 8 6 12 12 C 1.50699 * 109.47401 * 185.68459 * 11 9 8 13 13 H 1.07999 * 119.99644 * 355.32015 * 12 11 9 14 14 C 1.37873 * 120.00039 * 175.04838 * 12 11 9 15 15 N 1.31518 * 119.99958 * 0.27636 * 14 12 11 16 16 Si 1.86799 * 120.00018 * 180.27220 * 14 12 11 17 17 H 1.48504 * 109.46939 * 90.00002 * 16 14 12 18 18 H 1.48494 * 109.47441 * 209.99983 * 16 14 12 19 19 H 1.48496 * 109.47449 * 330.00297 * 16 14 12 20 20 C 1.50699 * 109.47333 * 208.00896 * 9 8 6 21 21 C 1.38234 * 119.99958 * 319.73062 * 20 9 8 22 22 C 1.38237 * 119.99898 * 179.80892 * 21 20 9 23 23 C 1.38232 * 120.00039 * 0.39619 * 22 21 20 24 24 C 1.38236 * 120.00044 * 359.85669 * 23 22 21 25 25 C 1.38235 * 119.99980 * 359.95617 * 24 23 22 26 26 C 1.47049 * 117.29499 * 298.74748 * 5 4 2 27 27 C 1.50073 * 109.09062 * 42.37967 * 26 5 4 28 28 O 1.21280 * 118.49725 * 167.44396 * 27 26 5 29 29 N 1.33384 * 123.01172 * 347.66784 * 27 26 5 30 30 C 1.46505 * 117.70129 * 184.09804 * 29 27 26 31 31 H 1.09003 * 109.46984 * 304.39865 * 1 2 3 32 32 H 1.08992 * 109.47252 * 64.39618 * 1 2 3 33 33 H 1.08995 * 109.46925 * 184.40134 * 1 2 3 34 34 H 1.08996 * 109.71805 * 47.34098 * 4 2 1 35 35 H 1.08995 * 109.71729 * 286.68481 * 4 2 1 36 36 H 0.96999 * 120.00477 * 355.41399 * 8 6 5 37 37 H 1.09000 * 109.47123 * 65.68194 * 11 9 8 38 38 H 1.08997 * 109.47237 * 305.68953 * 11 9 8 39 39 H 0.97008 * 119.99828 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.00054 * 359.97438 * 21 20 9 41 41 H 1.07997 * 119.99681 * 180.23462 * 22 21 20 42 42 H 1.08001 * 120.00102 * 179.83676 * 23 22 21 43 43 H 1.08005 * 120.00268 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00284 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.56391 * 162.30559 * 26 5 4 46 46 H 1.08994 * 109.56329 * 282.66805 * 26 5 4 47 47 H 1.08998 * 109.46343 * 214.74339 * 30 29 27 48 48 H 1.08996 * 109.46965 * 334.74451 * 30 29 27 49 49 H 1.08995 * 109.46858 * 94.74850 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0335 -0.7087 1.2588 5 7 3.4722 -0.9756 1.0918 6 6 4.3860 -0.4416 1.9264 7 8 4.0285 0.2762 2.8402 8 7 5.6958 -0.7045 1.7485 9 6 6.6962 -0.0453 2.5918 10 1 6.3430 0.9490 2.8649 11 6 6.9200 -0.8728 3.8591 12 6 7.8422 -0.1277 4.7894 13 1 8.2899 0.8033 4.4745 14 6 8.1099 -0.6317 6.0445 15 7 7.5647 -1.7655 6.4278 16 14 9.2470 0.2958 7.2003 17 1 8.4519 1.2432 8.0222 18 1 9.9423 -0.6685 8.0902 19 1 10.2508 1.0502 6.4076 20 6 7.9932 0.0729 1.8336 21 6 8.4273 -0.9721 1.0395 22 6 9.6151 -0.8621 0.3409 23 6 10.3728 0.2896 0.4428 24 6 9.9413 1.3325 1.2410 25 6 8.7516 1.2240 1.9366 26 6 3.8718 -1.8431 -0.0263 27 6 3.0766 -1.4721 -1.2438 28 8 3.4233 -1.9147 -2.3184 29 7 2.0085 -0.6745 -1.1989 30 6 1.2642 -0.4623 -2.4429 31 1 -0.3633 0.5806 0.8480 32 1 -0.3633 0.4441 -0.9267 33 1 -0.3633 -1.0246 0.0789 34 1 1.4980 -1.6489 1.3907 35 1 1.8764 -0.0702 2.1281 36 1 5.9763 -1.3299 1.0622 37 1 7.3679 -1.8304 3.5935 38 1 5.9644 -1.0439 4.3548 39 1 7.7534 -2.1203 7.3108 40 1 7.8371 -1.8734 0.9628 41 1 9.9523 -1.6770 -0.2824 42 1 11.3020 0.3745 -0.1009 43 1 10.5335 2.2321 1.3210 44 1 8.4142 2.0389 2.5599 45 1 4.9342 -1.7099 -0.2300 46 1 3.6751 -2.8838 0.2308 47 1 0.8803 0.5576 -2.4669 48 1 1.9261 -0.6216 -3.2940 49 1 0.4324 -1.1649 -2.4928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281817680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:26 Heat of formation + Delta-G solvation = -19.247907 kcal Electronic energy + Delta-G solvation = -30974.524675 eV Core-core repulsion = 26902.154721 eV Total energy + Delta-G solvation = -4072.369953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09884 -39.67757 -38.68631 -37.12780 -35.35162 -34.97018 -32.83770 -31.93409 -30.95648 -30.42497 -28.83243 -28.51968 -27.63975 -25.48336 -24.30965 -22.87383 -22.37806 -22.06112 -20.66298 -19.74845 -18.93818 -18.27106 -17.60069 -16.74668 -16.30324 -16.10576 -15.98091 -15.68975 -15.11497 -14.77538 -14.76430 -14.48612 -14.26426 -13.84675 -13.55891 -13.53336 -13.47616 -12.98597 -12.90171 -12.74918 -12.62118 -12.47906 -12.28572 -12.14808 -12.11850 -11.72297 -11.60386 -11.49078 -11.12941 -10.84419 -10.73375 -10.63554 -10.47792 -10.08994 -9.88409 -9.79467 -9.13410 -9.08565 -8.79865 -8.48412 -8.46952 -8.31851 -8.03607 -5.97756 -3.99097 1.80554 1.84822 2.30185 2.45178 2.82171 3.34666 3.40579 3.42980 3.46336 4.00709 4.11263 4.28271 4.39299 4.50398 4.62408 4.74522 4.86222 5.01645 5.14315 5.17621 5.19012 5.25982 5.27773 5.35670 5.37489 5.40392 5.47794 5.51738 5.54975 5.64397 5.75570 5.90551 5.97805 5.98658 6.11509 6.25443 6.38859 6.49444 6.71658 6.81847 6.83968 6.89016 6.93638 7.10828 7.16217 7.43182 7.66650 7.74447 7.82054 8.00923 8.17721 8.37971 8.85345 9.05685 9.63854 11.13926 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.003305 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.683517 B = 8470.323617 C =10100.066198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 H 0.081 0.919 4 C 0.121 3.879 5 N -0.640 5.640 6 C 0.713 3.287 7 O -0.572 6.572 8 N -0.735 5.735 9 C 0.197 3.803 10 H 0.090 0.910 11 C 0.025 3.975 12 C -0.512 4.512 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.050 4.050 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.098 4.098 26 C 0.101 3.899 27 C 0.513 3.487 28 O -0.548 6.548 29 N -0.599 5.599 30 C 0.073 3.927 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.387 0.613 37 H 0.015 0.985 38 H 0.033 0.967 39 H 0.260 0.740 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 2.174 -16.778 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.414 3.586 7 O -0.448 6.448 8 N -0.390 5.390 9 C 0.094 3.906 10 H 0.108 0.892 11 C -0.013 4.013 12 C -0.551 4.551 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.050 4.050 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.026 4.026 27 C 0.300 3.700 28 O -0.425 6.425 29 N -0.332 5.332 30 C -0.069 4.069 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.223 0.777 37 H 0.033 0.967 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.122 0.878 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.508 2.386 -16.457 19.671 hybrid contribution 0.823 -0.029 0.497 0.962 sum -9.685 2.357 -15.959 18.817 Atomic orbital electron populations 1.22176 0.93266 1.03246 1.03410 1.21487 0.95218 0.97051 0.84359 0.90137 1.21858 0.79320 1.01357 0.97730 1.47359 1.06535 1.53166 1.31068 1.15705 0.80948 0.80309 0.81603 1.90952 1.79234 1.42001 1.32641 1.45611 1.04474 1.48835 1.40031 1.20253 0.82093 0.98369 0.89900 0.89240 1.19435 0.97971 0.94458 0.89444 1.21074 1.27403 1.07688 0.98918 0.92294 1.24948 0.96158 0.95007 0.98019 1.69971 1.44046 1.19481 1.19790 0.86622 0.80975 0.79662 0.80959 1.20654 1.21333 1.19810 1.19955 0.96758 0.93585 0.94736 1.20817 0.96963 0.98037 0.97959 1.20981 0.95161 0.97680 1.00044 1.20984 0.99682 0.94285 1.00295 1.21046 0.96510 0.98759 0.97545 1.20976 0.94854 0.97627 0.98220 1.21666 1.00453 0.96572 0.83896 1.20203 0.80586 0.78375 0.90857 1.90744 1.68357 1.53920 1.29503 1.47272 1.28269 1.47164 1.10491 1.21733 0.96723 1.01150 0.87314 0.90420 0.91373 0.91644 0.90538 0.86523 0.77735 0.96688 0.94909 0.93072 0.86882 0.86667 0.86847 0.86599 0.85986 0.86954 0.87773 0.91283 0.89872 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.79 37.15 0.33 -0.60 16 2 C 0.12 1.06 3.51 -68.40 -0.24 0.82 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.12 1.27 5.84 -3.62 -0.02 1.25 16 5 N -0.64 -8.40 2.99 -180.10 -0.54 -8.94 16 6 C 0.71 12.49 8.32 -86.92 -0.72 11.77 16 7 O -0.57 -12.33 15.48 5.29 0.08 -12.25 16 8 N -0.73 -12.62 4.89 -59.81 -0.29 -12.91 16 9 C 0.20 4.04 2.21 -69.08 -0.15 3.88 16 10 H 0.09 1.99 7.41 -51.93 -0.38 1.60 16 11 C 0.02 0.63 4.74 -27.88 -0.13 0.50 16 12 C -0.51 -14.16 8.64 -34.44 -0.30 -14.45 16 13 H 0.06 1.56 6.43 -52.49 -0.34 1.23 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.05 -0.92 4.49 -104.62 -0.47 -1.39 16 21 C -0.12 -1.97 9.07 -39.58 -0.36 -2.32 16 22 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.10 -1.74 8.62 -39.58 -0.34 -2.08 16 26 C 0.10 1.13 6.38 -5.20 -0.03 1.09 16 27 C 0.51 6.20 7.57 -11.91 -0.09 6.11 16 28 O -0.55 -8.18 16.11 5.56 0.09 -8.09 16 29 N -0.60 -5.94 3.12 -175.25 -0.55 -6.49 16 30 C 0.07 0.58 8.89 59.85 0.53 1.12 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.33 6.43 -51.93 -0.33 -0.01 16 33 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 34 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 35 H 0.12 1.35 7.06 -51.93 -0.37 0.99 16 36 H 0.39 5.59 4.59 -40.82 -0.19 5.40 16 37 H 0.01 0.40 8.13 -51.93 -0.42 -0.02 16 38 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.11 1.68 6.90 -52.48 -0.36 1.31 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.12 2.12 7.83 -52.49 -0.41 1.71 16 45 H 0.11 1.22 6.02 -51.93 -0.31 0.91 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.07 0.41 7.20 -51.93 -0.37 0.04 16 48 H 0.08 0.80 6.95 -51.93 -0.36 0.44 16 49 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -35.49 393.68 -10.06 -45.55 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.21 Total: 6.03 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.29 Total: 0.54 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.64 Total: -54.49 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.34 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.49 -10.06 -45.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281817680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.298 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds