Wall clock time and date at job start Wed Apr 1 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.21705 * 2 1 4 4 C 1.52990 * 109.21827 * 119.38011 * 2 1 3 5 5 N 1.47274 * 108.18823 * 167.01139 * 4 2 1 6 6 C 1.34784 * 121.35023 * 118.47169 * 5 4 2 7 7 O 1.21582 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99551 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99649 * 175.40589 * 8 6 5 10 10 H 1.08997 * 109.47283 * 328.01560 * 9 8 6 11 11 C 1.53001 * 109.47043 * 88.01001 * 9 8 6 12 12 C 1.50699 * 109.47401 * 185.68459 * 11 9 8 13 13 H 1.07999 * 119.99644 * 355.32015 * 12 11 9 14 14 C 1.37873 * 120.00039 * 175.04838 * 12 11 9 15 15 N 1.31518 * 119.99958 * 0.27636 * 14 12 11 16 16 Si 1.86799 * 120.00018 * 180.27220 * 14 12 11 17 17 H 1.48504 * 109.46939 * 90.00002 * 16 14 12 18 18 H 1.48494 * 109.47441 * 209.99983 * 16 14 12 19 19 H 1.48496 * 109.47449 * 330.00297 * 16 14 12 20 20 C 1.50699 * 109.47333 * 208.00896 * 9 8 6 21 21 C 1.38234 * 119.99958 * 319.73062 * 20 9 8 22 22 C 1.38237 * 119.99898 * 179.80892 * 21 20 9 23 23 C 1.38232 * 120.00039 * 0.39619 * 22 21 20 24 24 C 1.38236 * 120.00044 * 359.85669 * 23 22 21 25 25 C 1.38235 * 119.99980 * 359.95617 * 24 23 22 26 26 C 1.47049 * 117.29499 * 298.74748 * 5 4 2 27 27 C 1.50073 * 109.09062 * 42.37967 * 26 5 4 28 28 O 1.21280 * 118.49725 * 167.44396 * 27 26 5 29 29 N 1.33384 * 123.01172 * 347.66784 * 27 26 5 30 30 C 1.46505 * 117.70129 * 184.09804 * 29 27 26 31 31 H 1.09003 * 109.46984 * 304.39865 * 1 2 3 32 32 H 1.08992 * 109.47252 * 64.39618 * 1 2 3 33 33 H 1.08995 * 109.46925 * 184.40134 * 1 2 3 34 34 H 1.08996 * 109.71805 * 47.34098 * 4 2 1 35 35 H 1.08995 * 109.71729 * 286.68481 * 4 2 1 36 36 H 0.96999 * 120.00477 * 355.41399 * 8 6 5 37 37 H 1.09000 * 109.47123 * 65.68194 * 11 9 8 38 38 H 1.08997 * 109.47237 * 305.68953 * 11 9 8 39 39 H 0.97008 * 119.99828 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.00054 * 359.97438 * 21 20 9 41 41 H 1.07997 * 119.99681 * 180.23462 * 22 21 20 42 42 H 1.08001 * 120.00102 * 179.83676 * 23 22 21 43 43 H 1.08005 * 120.00268 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00284 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.56391 * 162.30559 * 26 5 4 46 46 H 1.08994 * 109.56329 * 282.66805 * 26 5 4 47 47 H 1.08998 * 109.46343 * 214.74339 * 30 29 27 48 48 H 1.08996 * 109.46965 * 334.74451 * 30 29 27 49 49 H 1.08995 * 109.46858 * 94.74850 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0335 -0.7087 1.2588 5 7 3.4722 -0.9756 1.0918 6 6 4.3860 -0.4416 1.9264 7 8 4.0285 0.2762 2.8402 8 7 5.6958 -0.7045 1.7485 9 6 6.6962 -0.0453 2.5918 10 1 6.3430 0.9490 2.8649 11 6 6.9200 -0.8728 3.8591 12 6 7.8422 -0.1277 4.7894 13 1 8.2899 0.8033 4.4745 14 6 8.1099 -0.6317 6.0445 15 7 7.5647 -1.7655 6.4278 16 14 9.2470 0.2958 7.2003 17 1 8.4519 1.2432 8.0222 18 1 9.9423 -0.6685 8.0902 19 1 10.2508 1.0502 6.4076 20 6 7.9932 0.0729 1.8336 21 6 8.4273 -0.9721 1.0395 22 6 9.6151 -0.8621 0.3409 23 6 10.3728 0.2896 0.4428 24 6 9.9413 1.3325 1.2410 25 6 8.7516 1.2240 1.9366 26 6 3.8718 -1.8431 -0.0263 27 6 3.0766 -1.4721 -1.2438 28 8 3.4233 -1.9147 -2.3184 29 7 2.0085 -0.6745 -1.1989 30 6 1.2642 -0.4623 -2.4429 31 1 -0.3633 0.5806 0.8480 32 1 -0.3633 0.4441 -0.9267 33 1 -0.3633 -1.0246 0.0789 34 1 1.4980 -1.6489 1.3907 35 1 1.8764 -0.0702 2.1281 36 1 5.9763 -1.3299 1.0622 37 1 7.3679 -1.8304 3.5935 38 1 5.9644 -1.0439 4.3548 39 1 7.7534 -2.1203 7.3108 40 1 7.8371 -1.8734 0.9628 41 1 9.9523 -1.6770 -0.2824 42 1 11.3020 0.3745 -0.1009 43 1 10.5335 2.2321 1.3210 44 1 8.4142 2.0389 2.5599 45 1 4.9342 -1.7099 -0.2300 46 1 3.6751 -2.8838 0.2308 47 1 0.8803 0.5576 -2.4669 48 1 1.9261 -0.6216 -3.2940 49 1 0.4324 -1.1649 -2.4928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281817680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:25 Heat of formation + Delta-G solvation = -42.104375 kcal Electronic energy + Delta-G solvation = -30975.515806 eV Core-core repulsion = 26902.154721 eV Total energy + Delta-G solvation = -4073.361084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.14392 -40.95999 -39.95261 -38.10021 -36.73807 -36.25947 -34.83155 -32.95360 -32.22057 -31.65579 -30.36458 -29.67388 -28.47409 -26.87161 -25.64916 -23.94156 -23.65868 -23.47752 -21.92953 -21.20426 -20.08973 -19.31642 -18.75841 -18.36646 -17.55447 -17.10237 -17.05628 -16.94249 -16.64736 -16.20008 -16.03048 -15.91080 -15.50674 -15.02417 -14.88309 -14.55575 -14.48428 -14.18668 -14.13707 -14.10168 -13.85548 -13.69231 -13.23726 -13.15352 -13.10502 -12.91170 -12.84792 -12.64464 -12.51690 -12.44763 -12.31702 -12.00544 -11.87894 -11.70572 -11.59294 -11.30766 -11.09850 -10.54640 -10.22703 -9.89580 -9.70893 -9.66374 -9.44589 -8.17403 -6.25887 0.53758 0.60415 1.33749 1.37085 1.40252 1.40969 1.51322 1.89248 2.07389 2.41723 2.77147 3.01918 3.18001 3.23606 3.59830 3.81151 3.90609 3.96848 4.04417 4.08342 4.23637 4.25280 4.34626 4.44113 4.45736 4.52392 4.58304 4.68955 4.72242 4.80136 4.83555 4.84086 4.87765 5.00623 5.12039 5.15790 5.21405 5.22067 5.29651 5.38482 5.47849 5.55347 5.61989 5.68768 5.74881 5.77343 5.92321 6.21774 6.24222 6.24588 6.78580 6.87125 6.93564 7.41167 7.46960 8.95131 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.003305 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.683517 B = 8470.323617 C =10100.066198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.073 0.927 4 C 0.114 3.886 5 N -0.632 5.632 6 C 0.709 3.291 7 O -0.619 6.619 8 N -0.728 5.728 9 C 0.216 3.784 10 H 0.064 0.936 11 C 0.039 3.961 12 C -0.523 4.523 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.958 3.042 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.075 4.075 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.121 4.121 26 C 0.099 3.901 27 C 0.511 3.489 28 O -0.579 6.579 29 N -0.596 5.596 30 C 0.071 3.929 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.401 0.599 37 H -0.004 1.004 38 H -0.014 1.014 39 H 0.261 0.739 40 H 0.122 0.878 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 2.564 -18.629 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.091 0.909 4 C -0.008 4.008 5 N -0.372 5.372 6 C 0.410 3.590 7 O -0.499 6.499 8 N -0.384 5.384 9 C 0.111 3.889 10 H 0.082 0.918 11 C 0.001 3.999 12 C -0.562 4.562 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.075 4.075 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.026 4.026 27 C 0.298 3.702 28 O -0.460 6.460 29 N -0.327 5.327 30 C -0.071 4.071 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.240 0.760 37 H 0.014 0.986 38 H 0.004 0.996 39 H 0.070 0.930 40 H 0.140 0.860 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.143 0.857 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.836 2.772 -18.361 21.013 hybrid contribution 0.555 -0.159 0.999 1.154 sum -9.281 2.613 -17.362 19.859 Atomic orbital electron populations 1.22147 0.90373 1.04084 1.04686 1.21497 0.97298 0.95953 0.82832 0.90883 1.22121 0.77794 1.02492 0.98436 1.47327 1.06956 1.52445 1.30448 1.15891 0.81342 0.80105 0.81650 1.90912 1.80012 1.44151 1.34856 1.45357 1.04173 1.49009 1.39836 1.19635 0.84212 0.96009 0.89021 0.91830 1.19177 0.94920 0.94323 0.91448 1.21482 1.27303 1.07900 0.99473 0.91575 1.25876 0.97868 0.95897 0.99922 1.70113 1.45723 1.21243 1.20336 0.85546 0.79062 0.78395 0.78711 1.20200 1.20855 1.18363 1.19813 0.96055 0.95265 0.96407 1.21025 0.98138 0.97738 0.97948 1.21389 0.94066 0.98838 0.99423 1.21455 1.00566 0.93335 0.99253 1.21373 0.95600 1.00236 0.96834 1.21090 0.96180 0.97383 0.99340 1.21821 1.00673 0.97168 0.82968 1.20210 0.81041 0.78590 0.90344 1.90734 1.69393 1.55505 1.30360 1.47389 1.27652 1.46055 1.11628 1.21889 0.96519 1.03108 0.85580 0.89476 0.89827 0.90967 0.88357 0.87952 0.76048 0.98556 0.99564 0.93023 0.85991 0.83464 0.83237 0.84018 0.86927 0.86743 0.85667 0.88954 0.91639 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.79 71.98 0.63 -0.74 16 2 C 0.13 2.04 3.51 45.15 0.16 2.20 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.11 2.36 5.84 86.23 0.50 2.86 16 5 N -0.63 -16.86 2.99 -841.98 -2.51 -19.37 16 6 C 0.71 26.14 8.32 179.05 1.49 27.63 16 7 O -0.62 -28.53 15.48 -3.97 -0.06 -28.59 16 8 N -0.73 -26.30 4.89 -461.42 -2.26 -28.55 16 9 C 0.22 9.38 2.21 44.24 0.10 9.47 16 10 H 0.06 3.05 7.41 -2.39 -0.02 3.04 16 11 C 0.04 2.14 4.74 29.85 0.14 2.28 16 12 C -0.52 -29.99 8.64 25.60 0.22 -29.77 16 13 H 0.07 3.61 6.43 -2.91 -0.02 3.59 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 16 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 20 C -0.07 -2.82 4.49 -19.87 -0.09 -2.91 16 21 C -0.13 -4.20 9.07 22.27 0.20 -3.99 16 22 C -0.12 -3.19 10.05 22.27 0.22 -2.96 16 23 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 24 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 25 C -0.12 -4.32 8.62 22.27 0.19 -4.13 16 26 C 0.10 2.18 6.38 85.33 0.54 2.72 16 27 C 0.51 11.96 7.57 87.68 0.66 12.62 16 28 O -0.58 -17.02 16.11 -3.03 -0.05 -17.07 16 29 N -0.60 -10.98 3.12 -827.53 -2.58 -13.56 16 30 C 0.07 0.99 8.89 127.77 1.14 2.12 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.53 6.43 -2.39 -0.02 0.51 16 33 H 0.07 0.59 8.11 -2.39 -0.02 0.57 16 34 H 0.10 1.61 8.06 -2.39 -0.02 1.59 16 35 H 0.10 2.47 7.06 -2.39 -0.02 2.45 16 36 H 0.40 11.93 4.59 -92.71 -0.43 11.50 16 37 H 0.00 -0.22 8.13 -2.39 -0.02 -0.24 16 38 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 40 H 0.12 3.57 6.90 -2.91 -0.02 3.55 16 41 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 44 H 0.11 4.07 7.83 -2.91 -0.02 4.05 16 45 H 0.11 2.46 6.02 -2.39 -0.01 2.44 16 46 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.09 0.85 7.20 -2.39 -0.02 0.84 16 48 H 0.06 1.19 6.95 -2.39 -0.02 1.17 16 49 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 Total: -1.00 -81.20 393.68 2.42 -78.78 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.54 Total: 27.15 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 7.03 Total: 11.65 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -7.06 Total: -119.29 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.11 Total: -45.66 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -81.20 2.42 -78.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281817680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.676 kcal (2) G-P(sol) polarization free energy of solvation -81.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds