Wall clock time and date at job start Wed Apr 1 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47236 * 2 1 4 4 N 1.46500 * 109.47068 * 239.99771 * 2 1 3 5 5 C 1.34773 * 120.00007 * 85.00333 * 4 2 1 6 6 O 1.21289 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00009 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.46936 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99943 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99846 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99835 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47309 * 59.99831 * 13 11 9 15 15 H 1.48494 * 109.47338 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47047 * 299.99903 * 13 11 9 17 17 C 1.50699 * 109.46869 * 119.99721 * 2 1 3 18 18 C 1.38284 * 119.92998 * 260.00284 * 17 2 1 19 19 C 1.38115 * 120.06655 * 180.02562 * 18 17 2 20 20 C 1.38869 * 119.93159 * 359.97438 * 19 18 17 21 21 N 1.39948 * 120.06789 * 179.97438 * 20 19 18 22 22 C 1.46419 * 119.23711 * 90.46140 * 21 20 19 23 23 C 1.53240 * 109.14711 * 208.88437 * 22 21 20 24 24 C 1.53240 * 108.71857 * 304.83965 * 23 22 21 25 25 N 1.46380 * 109.15341 * 55.39109 * 24 23 22 26 26 C 1.34136 * 119.32685 * 270.68708 * 21 20 19 27 27 O 1.21590 * 118.69769 * 359.41073 * 26 21 20 28 28 C 1.38862 * 119.86206 * 0.25833 * 20 19 18 29 29 C 1.38122 * 119.92466 * 359.48848 * 28 20 19 30 30 H 1.09004 * 109.46899 * 300.00102 * 1 2 3 31 31 H 1.08995 * 109.46551 * 59.99852 * 1 2 3 32 32 H 1.08997 * 109.47236 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99730 * 265.00208 * 4 2 1 34 34 H 1.09003 * 109.47170 * 299.99453 * 7 5 4 35 35 H 1.08997 * 109.47191 * 59.99984 * 7 5 4 36 36 H 1.08995 * 109.47152 * 299.99709 * 8 7 5 37 37 H 1.09004 * 109.47368 * 59.99740 * 8 7 5 38 38 H 0.97008 * 120.00308 * 179.97438 * 12 11 9 39 39 H 1.07996 * 119.96846 * 0.04214 * 18 17 2 40 40 H 1.08001 * 120.03227 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.33564 * 89.09495 * 22 21 20 42 42 H 1.09004 * 109.71052 * 328.89662 * 22 21 20 43 43 H 1.09002 * 109.62100 * 185.02281 * 23 22 21 44 44 H 1.09001 * 109.62709 * 64.65754 * 23 22 21 45 45 H 1.09005 * 109.52679 * 175.29156 * 24 23 22 46 46 H 1.08999 * 109.52806 * 295.42180 * 24 23 22 47 47 H 0.97000 * 119.33389 * 150.93995 * 25 24 23 48 48 H 1.07997 * 120.03884 * 179.72380 * 28 20 19 49 49 H 1.07994 * 119.96120 * 180.25428 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 6 2.7000 0.2541 -4.7590 9 6 3.2024 -0.4564 -5.9894 10 1 3.4591 -1.5043 -5.9409 11 6 3.3332 0.2312 -7.1773 12 7 3.0191 1.5069 -7.2368 13 14 3.9552 -0.6496 -8.7027 14 1 3.0390 -1.7699 -9.0357 15 1 4.0037 0.3041 -9.8398 16 1 5.3168 -1.1834 -8.4453 17 6 2.0324 -0.7104 1.2305 18 6 2.4585 0.0212 2.3239 19 6 2.9198 -0.6269 3.4529 20 6 2.9550 -2.0147 3.4895 21 7 3.4225 -2.6743 4.6318 22 6 2.4738 -3.0380 5.6861 23 6 3.2025 -3.0548 7.0341 24 6 4.4075 -3.9957 6.9300 25 7 5.2500 -3.5750 5.8094 26 6 4.7296 -2.9556 4.7394 27 8 5.4721 -2.6367 3.8309 28 6 2.5310 -2.7464 2.3881 29 6 2.0658 -2.0923 1.2640 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 3.6481 -1.1215 -3.3985 35 1 1.9760 -1.5507 -3.8325 36 1 1.7007 0.6462 -4.9480 37 1 3.3727 1.0762 -4.5144 38 1 3.1115 1.9907 -8.0724 39 1 2.4302 1.1004 2.2951 40 1 3.2529 -0.0550 4.3064 41 1 2.0668 -4.0278 5.4797 42 1 1.6636 -2.3095 5.7190 43 1 2.5262 -3.4106 7.8114 44 1 3.5437 -2.0488 7.2784 45 1 4.9834 -3.9538 7.8545 46 1 4.0602 -5.0154 6.7632 47 1 6.2039 -3.7479 5.8409 48 1 2.5613 -3.8256 2.4118 49 1 1.7320 -2.6609 0.4086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291459611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:10 Heat of formation + Delta-G solvation = -41.573549 kcal Electronic energy + Delta-G solvation = -29234.669497 eV Core-core repulsion = 25161.331432 eV Total energy + Delta-G solvation = -4073.338066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39903 -39.86497 -38.71528 -36.87544 -36.08177 -34.43822 -33.38726 -31.82612 -31.34283 -31.18199 -30.32251 -28.76658 -26.34515 -25.70367 -24.36720 -23.22642 -23.13405 -21.88389 -20.63286 -19.66425 -19.57334 -18.08524 -17.77389 -17.13636 -16.66210 -16.46036 -16.00710 -15.76569 -15.21738 -14.87556 -14.82468 -14.63826 -14.38220 -14.30084 -14.14654 -13.93595 -13.71264 -13.54968 -13.14348 -12.87234 -12.62717 -12.46613 -12.16392 -12.01654 -11.98473 -11.96010 -11.71158 -11.39585 -11.10719 -10.99181 -10.86467 -10.57628 -10.46759 -9.89246 -9.60976 -9.58546 -9.25037 -9.17044 -9.14132 -9.03363 -8.84674 -8.70082 -8.26900 -5.91214 -3.95388 0.95525 1.17977 2.22049 2.77224 3.25598 3.31563 3.38254 3.42017 3.43253 3.45417 3.68418 4.03196 4.14706 4.43920 4.51067 4.51931 4.65342 4.68830 4.73953 4.86386 4.91002 5.02614 5.14512 5.23571 5.26444 5.36443 5.39025 5.41900 5.43540 5.57263 5.72874 5.76849 5.77716 5.96222 6.01429 6.22385 6.24709 6.28874 6.32196 6.34611 6.38426 6.59801 6.82183 6.83188 6.95860 7.33015 7.79337 7.92296 7.94360 8.12564 8.21454 8.44149 8.84276 9.13077 9.67774 11.19672 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.001824 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.574386 B =15350.192814 C =16252.147136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.180 3.820 3 H 0.095 0.905 4 N -0.739 5.739 5 C 0.512 3.488 6 O -0.534 6.534 7 C -0.131 4.131 8 C 0.037 3.963 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.077 4.077 18 C -0.100 4.100 19 C -0.103 4.103 20 C 0.148 3.852 21 N -0.583 5.583 22 C 0.114 3.886 23 C -0.153 4.153 24 C 0.109 3.891 25 N -0.738 5.738 26 C 0.710 3.290 27 O -0.580 6.580 28 C -0.102 4.102 29 C -0.105 4.105 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.396 0.604 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.416 0.584 48 H 0.123 0.877 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 -12.770 35.770 38.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.075 3.925 3 H 0.113 0.887 4 N -0.394 5.394 5 C 0.301 3.699 6 O -0.409 6.409 7 C -0.171 4.171 8 C 0.000 4.000 9 C -0.565 4.565 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.078 4.078 18 C -0.119 4.119 19 C -0.123 4.123 20 C 0.058 3.942 21 N -0.318 5.318 22 C -0.008 4.008 23 C -0.192 4.192 24 C -0.016 4.016 25 N -0.396 5.396 26 C 0.412 3.588 27 O -0.457 6.457 28 C -0.121 4.121 29 C -0.124 4.124 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.254 0.746 48 H 0.141 0.859 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.552 -11.549 35.117 37.138 hybrid contribution 0.798 -1.118 -0.535 1.474 sum -2.754 -12.667 34.582 36.932 Atomic orbital electron populations 1.22159 0.94375 1.02223 1.02711 1.19724 0.94081 0.96971 0.81755 0.88671 1.46375 1.69514 1.13954 1.09519 1.21556 0.76283 0.87619 0.84456 1.90662 1.49030 1.16361 1.84895 1.21874 1.00968 1.01039 0.93195 1.18891 0.98338 0.93340 0.89436 1.21200 1.44398 0.96323 0.94623 0.92667 1.25021 0.95583 0.94853 0.98928 1.69988 1.48127 1.08146 1.26593 0.86653 0.79366 0.79342 0.82558 1.20289 1.21312 1.20259 1.20095 0.98269 0.93882 0.95531 1.20903 0.98478 1.00173 0.92388 1.21225 0.99173 0.93280 0.98605 1.17190 0.99896 0.90415 0.86705 1.44235 1.05928 1.62119 1.19516 1.21669 0.91976 1.01486 0.85714 1.22217 0.97947 1.01441 0.97569 1.21537 0.92366 0.97870 0.89814 1.44950 1.11883 1.64046 1.18769 1.15446 0.81886 0.78852 0.82649 1.91036 1.57440 1.58300 1.38905 1.21219 0.98456 0.99948 0.92500 1.20822 0.99961 0.93779 0.97848 0.91878 0.91279 0.92436 0.76911 0.90221 0.90262 0.95815 0.95817 0.92939 0.85210 0.85963 0.91351 0.89559 0.88248 0.90285 0.89731 0.91599 0.74625 0.85912 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.46 37.16 0.35 -1.49 16 2 C 0.18 2.35 2.77 -69.08 -0.19 2.16 16 3 H 0.10 1.42 7.44 -51.93 -0.39 1.03 16 4 N -0.74 -10.90 5.03 -54.93 -0.28 -11.17 16 5 C 0.51 10.12 7.79 -10.99 -0.09 10.03 16 6 O -0.53 -12.73 15.65 5.55 0.09 -12.64 16 7 C -0.13 -2.74 5.64 -27.89 -0.16 -2.90 16 8 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 9 C -0.53 -15.29 9.11 -34.44 -0.31 -15.60 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -27.88 13.29 55.43 0.74 -27.14 16 13 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.08 -0.87 4.96 -104.59 -0.52 -1.39 16 18 C -0.10 -1.06 9.66 -39.61 -0.38 -1.44 16 19 C -0.10 -1.07 9.97 -39.39 -0.39 -1.46 16 20 C 0.15 1.56 4.26 -83.69 -0.36 1.20 16 21 N -0.58 -5.20 2.85 -119.11 -0.34 -5.54 16 22 C 0.11 0.54 6.50 -3.96 -0.03 0.51 16 23 C -0.15 -0.39 6.19 -26.48 -0.16 -0.56 16 24 C 0.11 0.32 7.21 -3.98 -0.03 0.29 16 25 N -0.74 -5.00 5.58 -65.53 -0.37 -5.37 16 26 C 0.71 7.78 8.15 -88.06 -0.72 7.07 16 27 O -0.58 -9.29 16.94 5.29 0.09 -9.20 16 28 C -0.10 -1.05 9.97 -39.39 -0.39 -1.44 16 29 C -0.11 -1.08 9.04 -39.61 -0.36 -1.44 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 4.83 6.86 -40.82 -0.28 4.55 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.13 1.19 8.03 -52.49 -0.42 0.77 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.34 8.05 -51.93 -0.42 -0.08 16 43 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 46 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.42 2.45 8.88 -40.82 -0.36 2.08 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.13 1.12 6.91 -52.49 -0.36 0.75 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -39.10 406.56 -10.60 -49.70 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.69 Total: 2.10 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.95 Total: -3.93 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.24 Total: -49.23 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.18 Total: -21.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -39.10 -10.60 -49.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.128 kcal (2) G-P(sol) polarization free energy of solvation -39.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds