Wall clock time and date at job start Wed Apr 1 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47236 * 2 1 4 4 N 1.46500 * 109.47068 * 239.99771 * 2 1 3 5 5 C 1.34773 * 120.00007 * 85.00333 * 4 2 1 6 6 O 1.21289 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00009 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.46936 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99943 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99846 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99835 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47309 * 59.99831 * 13 11 9 15 15 H 1.48494 * 109.47338 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47047 * 299.99903 * 13 11 9 17 17 C 1.50699 * 109.46869 * 119.99721 * 2 1 3 18 18 C 1.38284 * 119.92998 * 260.00284 * 17 2 1 19 19 C 1.38115 * 120.06655 * 180.02562 * 18 17 2 20 20 C 1.38869 * 119.93159 * 359.97438 * 19 18 17 21 21 N 1.39948 * 120.06789 * 179.97438 * 20 19 18 22 22 C 1.46419 * 119.23711 * 90.46140 * 21 20 19 23 23 C 1.53240 * 109.14711 * 208.88437 * 22 21 20 24 24 C 1.53240 * 108.71857 * 304.83965 * 23 22 21 25 25 N 1.46380 * 109.15341 * 55.39109 * 24 23 22 26 26 C 1.34136 * 119.32685 * 270.68708 * 21 20 19 27 27 O 1.21590 * 118.69769 * 359.41073 * 26 21 20 28 28 C 1.38862 * 119.86206 * 0.25833 * 20 19 18 29 29 C 1.38122 * 119.92466 * 359.48848 * 28 20 19 30 30 H 1.09004 * 109.46899 * 300.00102 * 1 2 3 31 31 H 1.08995 * 109.46551 * 59.99852 * 1 2 3 32 32 H 1.08997 * 109.47236 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99730 * 265.00208 * 4 2 1 34 34 H 1.09003 * 109.47170 * 299.99453 * 7 5 4 35 35 H 1.08997 * 109.47191 * 59.99984 * 7 5 4 36 36 H 1.08995 * 109.47152 * 299.99709 * 8 7 5 37 37 H 1.09004 * 109.47368 * 59.99740 * 8 7 5 38 38 H 0.97008 * 120.00308 * 179.97438 * 12 11 9 39 39 H 1.07996 * 119.96846 * 0.04214 * 18 17 2 40 40 H 1.08001 * 120.03227 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.33564 * 89.09495 * 22 21 20 42 42 H 1.09004 * 109.71052 * 328.89662 * 22 21 20 43 43 H 1.09002 * 109.62100 * 185.02281 * 23 22 21 44 44 H 1.09001 * 109.62709 * 64.65754 * 23 22 21 45 45 H 1.09005 * 109.52679 * 175.29156 * 24 23 22 46 46 H 1.08999 * 109.52806 * 295.42180 * 24 23 22 47 47 H 0.97000 * 119.33389 * 150.93995 * 25 24 23 48 48 H 1.07997 * 120.03884 * 179.72380 * 28 20 19 49 49 H 1.07994 * 119.96120 * 180.25428 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 6 2.7000 0.2541 -4.7590 9 6 3.2024 -0.4564 -5.9894 10 1 3.4591 -1.5043 -5.9409 11 6 3.3332 0.2312 -7.1773 12 7 3.0191 1.5069 -7.2368 13 14 3.9552 -0.6496 -8.7027 14 1 3.0390 -1.7699 -9.0357 15 1 4.0037 0.3041 -9.8398 16 1 5.3168 -1.1834 -8.4453 17 6 2.0324 -0.7104 1.2305 18 6 2.4585 0.0212 2.3239 19 6 2.9198 -0.6269 3.4529 20 6 2.9550 -2.0147 3.4895 21 7 3.4225 -2.6743 4.6318 22 6 2.4738 -3.0380 5.6861 23 6 3.2025 -3.0548 7.0341 24 6 4.4075 -3.9957 6.9300 25 7 5.2500 -3.5750 5.8094 26 6 4.7296 -2.9556 4.7394 27 8 5.4721 -2.6367 3.8309 28 6 2.5310 -2.7464 2.3881 29 6 2.0658 -2.0923 1.2640 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 3.6481 -1.1215 -3.3985 35 1 1.9760 -1.5507 -3.8325 36 1 1.7007 0.6462 -4.9480 37 1 3.3727 1.0762 -4.5144 38 1 3.1115 1.9907 -8.0724 39 1 2.4302 1.1004 2.2951 40 1 3.2529 -0.0550 4.3064 41 1 2.0668 -4.0278 5.4797 42 1 1.6636 -2.3095 5.7190 43 1 2.5262 -3.4106 7.8114 44 1 3.5437 -2.0488 7.2784 45 1 4.9834 -3.9538 7.8545 46 1 4.0602 -5.0154 6.7632 47 1 6.2039 -3.7479 5.8409 48 1 2.5613 -3.8256 2.4118 49 1 1.7320 -2.6609 0.4086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291459611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:09 Heat of formation + Delta-G solvation = -68.969088 kcal Electronic energy + Delta-G solvation = -29235.857457 eV Core-core repulsion = 25161.331432 eV Total energy + Delta-G solvation = -4074.526026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08549 -41.05596 -39.88385 -37.58318 -37.03327 -35.57835 -35.31027 -33.25831 -32.33584 -31.99752 -31.62729 -29.61426 -27.71084 -26.76959 -25.22230 -24.26292 -23.93352 -23.27947 -21.78801 -21.11517 -20.22552 -18.92102 -18.66940 -18.39348 -17.86621 -17.53609 -17.01474 -16.78427 -16.49574 -16.38538 -16.14220 -15.68263 -15.30770 -15.07627 -14.87719 -14.71370 -14.58436 -14.46484 -14.35375 -14.20885 -14.13104 -13.46469 -13.36461 -13.22640 -13.08977 -12.78204 -12.65840 -12.51490 -12.43129 -12.33336 -12.13782 -11.97217 -11.89290 -11.63007 -11.31558 -11.27210 -10.74020 -10.55657 -10.23147 -10.15501 -9.96072 -9.80487 -9.66051 -8.17158 -6.31261 0.12360 0.37936 1.41915 1.46730 1.54373 1.61441 1.72866 2.01179 2.22516 2.44817 2.67112 2.87286 3.15442 3.53784 3.77222 3.82840 3.91854 3.96557 4.04909 4.21224 4.28222 4.28542 4.38294 4.41627 4.51448 4.53955 4.57000 4.59179 4.65316 4.72643 4.78027 4.84289 4.90576 5.01211 5.09390 5.13677 5.18147 5.25947 5.36526 5.39410 5.46579 5.50194 5.60710 5.64274 5.65079 5.86192 6.03900 6.06561 6.18587 6.59262 6.71314 6.86731 7.34490 7.38866 7.49373 8.95217 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.001824 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.574386 B =15350.192814 C =16252.147136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.181 3.819 3 H 0.073 0.927 4 N -0.716 5.716 5 C 0.514 3.486 6 O -0.585 6.585 7 C -0.121 4.121 8 C 0.043 3.957 9 C -0.545 4.545 10 H 0.075 0.925 11 C -0.007 4.007 12 N -0.937 5.937 13 Si 0.975 3.025 14 H -0.262 1.262 15 H -0.287 1.287 16 H -0.264 1.264 17 C -0.087 4.087 18 C -0.104 4.104 19 C -0.111 4.111 20 C 0.142 3.858 21 N -0.582 5.582 22 C 0.105 3.895 23 C -0.147 4.147 24 C 0.103 3.897 25 N -0.730 5.730 26 C 0.702 3.298 27 O -0.643 6.643 28 C -0.108 4.108 29 C -0.103 4.103 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.100 0.900 35 H 0.106 0.894 36 H -0.015 1.015 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.133 0.867 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.418 0.582 48 H 0.134 0.866 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -16.059 37.800 41.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.076 3.924 3 H 0.091 0.909 4 N -0.370 5.370 5 C 0.303 3.697 6 O -0.464 6.464 7 C -0.161 4.161 8 C 0.005 3.995 9 C -0.583 4.583 10 H 0.093 0.907 11 C -0.205 4.205 12 N -0.577 5.577 13 Si 0.798 3.202 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.087 4.087 18 C -0.123 4.123 19 C -0.130 4.130 20 C 0.051 3.949 21 N -0.316 5.316 22 C -0.016 4.016 23 C -0.185 4.185 24 C -0.020 4.020 25 N -0.387 5.387 26 C 0.403 3.597 27 O -0.525 6.525 28 C -0.128 4.128 29 C -0.122 4.122 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.003 0.997 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.151 0.849 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.256 0.744 48 H 0.152 0.848 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.806 -14.923 37.257 40.315 hybrid contribution 0.850 -0.113 -0.997 1.315 sum -2.957 -15.036 36.260 39.365 Atomic orbital electron populations 1.22095 0.93092 1.03265 1.02325 1.19763 0.95057 0.95929 0.81608 0.90904 1.46108 1.67746 1.14526 1.08601 1.21284 0.76034 0.86875 0.85503 1.90650 1.51551 1.18471 1.85762 1.21653 1.03038 0.99910 0.91482 1.18679 0.94877 0.93628 0.92296 1.21694 1.44111 0.97312 0.95173 0.90689 1.26142 0.95618 0.95597 1.03101 1.70172 1.49512 1.10282 1.27695 0.85367 0.79301 0.78135 0.77387 1.18609 1.21246 1.18872 1.19899 0.99716 0.94320 0.94783 1.21043 0.98183 1.00744 0.92379 1.21349 0.99277 0.93554 0.98831 1.17439 0.99160 0.90728 0.87542 1.44338 1.05919 1.61436 1.19901 1.21998 0.91647 1.02329 0.85585 1.22247 0.98150 1.01064 0.97062 1.21873 0.92422 0.98475 0.89263 1.45010 1.12542 1.62622 1.18553 1.15747 0.82120 0.78965 0.82869 1.90982 1.59089 1.61007 1.41401 1.21385 0.98427 1.00594 0.92365 1.20979 0.99424 0.93333 0.98441 0.89829 0.94080 0.90620 0.74989 0.88185 0.87555 0.99688 1.00069 0.92863 0.84452 0.85171 0.90028 0.88771 0.84920 0.91190 0.87163 0.90240 0.74378 0.84788 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.46 71.99 0.68 -2.74 16 2 C 0.18 4.70 2.77 44.25 0.12 4.82 16 3 H 0.07 2.25 7.44 -2.39 -0.02 2.24 16 4 N -0.72 -20.68 5.03 -446.09 -2.24 -22.92 16 5 C 0.51 20.71 7.79 87.66 0.68 21.39 16 6 O -0.58 -29.37 15.65 -3.06 -0.05 -29.42 16 7 C -0.12 -5.07 5.64 29.85 0.17 -4.91 16 8 C 0.04 2.46 4.26 29.85 0.13 2.59 16 9 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 10 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 11 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 12 N -0.94 -60.58 13.29 21.45 0.28 -60.29 16 13 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 14 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 C -0.09 -1.87 4.96 -19.84 -0.10 -1.97 16 18 C -0.10 -2.17 9.66 22.25 0.21 -1.95 16 19 C -0.11 -2.22 9.97 22.39 0.22 -2.00 16 20 C 0.14 2.85 4.26 38.15 0.16 3.01 16 21 N -0.58 -9.63 2.85 -649.38 -1.85 -11.48 16 22 C 0.10 0.72 6.50 86.47 0.56 1.29 16 23 C -0.15 -0.28 6.19 30.75 0.19 -0.09 16 24 C 0.10 0.28 7.21 86.48 0.62 0.91 16 25 N -0.73 -8.87 5.58 -479.85 -2.68 -11.55 16 26 C 0.70 14.97 8.15 179.45 1.46 16.43 16 27 O -0.64 -21.00 16.94 -4.00 -0.07 -21.07 16 28 C -0.11 -2.07 9.97 22.39 0.22 -1.84 16 29 C -0.10 -1.95 9.04 22.25 0.20 -1.75 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.41 9.25 6.86 -92.71 -0.64 8.61 16 34 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 35 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 36 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 37 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 38 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 39 H 0.14 2.53 8.03 -2.91 -0.02 2.50 16 40 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.09 0.52 8.05 -2.38 -0.02 0.50 16 43 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.11 -0.20 8.14 -2.38 -0.02 -0.22 16 46 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.42 4.55 8.88 -92.71 -0.82 3.73 16 48 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 49 H 0.14 2.15 6.91 -2.91 -0.02 2.13 16 Total: -1.00 -90.49 406.56 1.18 -89.32 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.49 Total: 18.48 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 6.24 Total: 1.59 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -6.49 Total: -106.25 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -90.49 1.18 -89.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291459611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.346 kcal (2) G-P(sol) polarization free energy of solvation -90.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds