Wall clock time and date at job start Wed Apr 1 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.50802 * 2 1 4 4 C 1.53103 * 109.50393 * 120.08660 * 2 1 3 5 5 N 1.47015 * 109.25674 * 63.13029 * 4 2 1 6 6 C 1.38473 * 110.99647 * 182.39061 * 5 4 2 7 7 C 1.39406 * 119.52788 * 180.02562 * 6 5 4 8 8 C 1.36845 * 119.38387 * 179.97438 * 7 6 5 9 9 C 1.40406 * 118.48813 * 359.74535 * 8 7 6 10 10 C 1.47435 * 120.48375 * 180.24930 * 9 8 7 11 11 O 1.21627 * 120.00037 * 318.80719 * 10 9 8 12 12 N 1.34777 * 120.00002 * 138.80689 * 10 9 8 13 13 C 1.36908 * 119.99960 * 183.00689 * 12 10 9 14 14 H 1.08004 * 120.00252 * 16.88516 * 13 12 10 15 15 C 1.39021 * 120.00086 * 196.88313 * 13 12 10 16 16 N 1.31390 * 119.99799 * 17.37495 * 15 13 12 17 17 Si 1.86801 * 120.00062 * 197.37476 * 15 13 12 18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47107 * 120.00151 * 17 15 13 20 20 H 1.48499 * 109.46954 * 240.00137 * 17 15 13 21 21 C 1.46502 * 120.00058 * 3.00769 * 12 10 9 22 22 C 1.52994 * 117.49872 * 310.51836 * 21 12 10 23 23 C 1.52998 * 117.50293 * 241.85474 * 21 12 10 24 24 C 1.39633 * 119.03618 * 0.49396 * 9 8 7 25 25 N 1.31670 * 120.50562 * 359.50145 * 24 9 8 26 26 C 1.47014 * 110.75255 * 58.61254 * 5 4 2 27 27 C 1.53093 * 109.25922 * 301.38138 * 26 5 4 28 28 H 1.08996 * 109.51044 * 296.91882 * 27 26 5 29 29 C 1.53006 * 109.54159 * 176.80553 * 27 26 5 30 30 O 1.43017 * 109.25948 * 56.85389 * 27 26 5 31 31 H 1.09006 * 109.46692 * 299.91734 * 1 2 3 32 32 H 1.08999 * 109.47091 * 59.91159 * 1 2 3 33 33 H 1.09002 * 109.47174 * 179.91392 * 1 2 3 34 34 H 1.08993 * 109.50647 * 303.19357 * 4 2 1 35 35 H 1.09003 * 109.50126 * 183.05978 * 4 2 1 36 36 H 1.08004 * 120.31047 * 359.97438 * 7 6 5 37 37 H 1.07999 * 120.75839 * 180.02562 * 8 7 6 38 38 H 0.97002 * 119.99478 * 184.94054 * 16 15 13 39 39 H 1.09005 * 115.54743 * 96.18844 * 21 12 10 40 40 H 1.09000 * 117.50247 * 359.97438 * 22 21 12 41 41 H 1.09006 * 117.50220 * 145.02256 * 22 21 12 42 42 H 1.08992 * 117.50144 * 214.97909 * 23 21 12 43 43 H 1.09004 * 117.49131 * 0.02562 * 23 21 12 44 44 H 1.07992 * 119.74583 * 179.77234 * 24 9 8 45 45 H 1.08999 * 109.50371 * 61.32065 * 26 5 4 46 46 H 1.08998 * 109.50215 * 181.44634 * 26 5 4 47 47 H 1.08998 * 109.47092 * 300.19649 * 29 27 26 48 48 H 1.09004 * 109.46676 * 60.19768 * 29 27 26 49 49 H 1.08998 * 109.46760 * 180.19737 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 1.6118 -2.1288 1.2048 6 6 2.0102 -2.8053 2.3455 7 6 1.6949 -4.1556 2.4889 8 6 2.0904 -4.8214 3.6171 9 6 2.8099 -4.1148 4.5941 10 6 3.2625 -4.7900 5.8241 11 8 2.5265 -5.5729 6.3940 12 7 4.4917 -4.5398 6.3170 13 6 4.9353 -5.2124 7.4238 14 1 4.4387 -6.1176 7.7409 15 6 6.0251 -4.7303 8.1398 16 7 6.4160 -3.4858 7.9823 17 14 6.9338 -5.8518 9.3255 18 1 6.3000 -7.1948 9.3208 19 1 8.3527 -5.9720 8.9043 20 1 6.8705 -5.2800 10.6946 21 6 5.3530 -3.5481 5.6683 22 6 5.5320 -3.6515 4.1524 23 6 6.6810 -4.0378 5.0872 24 6 3.0862 -2.7619 4.3862 25 7 2.6866 -2.1596 3.2856 26 6 2.1202 -2.7912 -0.0052 27 6 1.6082 -2.0471 -1.2413 28 1 0.5205 -2.1072 -1.2777 29 6 2.1976 -2.6828 -2.5020 30 8 2.0084 -0.6761 -1.1660 31 1 -0.3633 0.5126 0.8908 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6326 -0.2457 2.1391 35 1 3.1299 -0.6762 1.2766 36 1 1.1435 -4.6716 1.7167 37 1 1.8585 -5.8676 3.7510 38 1 7.2184 -3.1696 8.4264 39 1 5.3328 -2.5499 6.1058 40 1 5.0093 -4.4576 3.6377 41 1 5.6300 -2.7213 3.5925 42 1 7.5341 -3.3617 5.1420 43 1 6.9134 -5.0980 5.1872 44 1 3.6355 -2.2065 5.1318 45 1 3.2101 -2.7770 0.0028 46 1 1.7692 -3.8229 -0.0301 47 1 3.2853 -2.6237 -2.4642 48 1 1.8922 -3.7276 -2.5589 49 1 1.8351 -2.1499 -3.3811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299278734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:30 Heat of formation + Delta-G solvation = 18.391144 kcal Electronic energy + Delta-G solvation = -31407.145268 eV Core-core repulsion = 27336.407466 eV Total energy + Delta-G solvation = -4070.737802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.97847 -39.76613 -38.37904 -36.17724 -35.69323 -33.72171 -33.21242 -32.16678 -31.33414 -30.86029 -29.48785 -27.21256 -26.01621 -24.78079 -23.65796 -22.84320 -22.18837 -21.58419 -21.35833 -19.73035 -19.33753 -17.67293 -17.09759 -16.90402 -16.52017 -15.97718 -15.54045 -15.35531 -15.24022 -14.99208 -14.61511 -14.25644 -14.09934 -14.02096 -13.63768 -13.35902 -13.22464 -12.80699 -12.77148 -12.63849 -12.48805 -12.28549 -12.14760 -12.08284 -11.87253 -11.62699 -11.33357 -11.24768 -11.15314 -10.87060 -10.58383 -10.49767 -10.38384 -10.21772 -9.98942 -9.66515 -9.56469 -9.44977 -9.17860 -8.94615 -8.48600 -7.89896 -7.82774 -6.42589 -3.93207 1.21221 1.62068 3.09155 3.21691 3.27755 3.31234 3.50210 3.74378 4.01546 4.25587 4.39075 4.55867 4.59618 4.63214 4.74382 4.80557 4.90737 4.93541 5.07552 5.10324 5.16365 5.20827 5.29297 5.32205 5.34620 5.40634 5.47857 5.57052 5.59395 5.67297 5.68045 5.82527 5.83825 5.85804 5.89564 5.98148 6.07308 6.09037 6.18777 6.22796 6.47818 6.59620 6.65513 6.69887 6.81094 6.98580 7.07652 7.23076 7.46774 7.96771 8.20368 8.36559 9.06564 9.28954 9.85281 10.60103 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.002707 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.443003 B =10342.457302 C =10576.012556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.086 3.914 3 H 0.108 0.892 4 C 0.037 3.963 5 N -0.472 5.472 6 C 0.302 3.698 7 C -0.191 4.191 8 C -0.023 4.023 9 C -0.161 4.161 10 C 0.483 3.517 11 O -0.585 6.585 12 N -0.405 5.405 13 C -0.307 4.307 14 H 0.105 0.895 15 C 0.040 3.960 16 N -0.861 5.861 17 Si 0.919 3.081 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.128 3.872 22 C -0.214 4.214 23 C -0.155 4.155 24 C 0.160 3.840 25 N -0.520 5.520 26 C 0.028 3.972 27 C 0.087 3.913 28 H 0.071 0.929 29 C -0.145 4.145 30 O -0.377 6.377 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.163 0.837 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 5.619 -18.296 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.028 3.972 3 H 0.126 0.874 4 C -0.090 4.090 5 N -0.190 5.190 6 C 0.070 3.930 7 C -0.214 4.214 8 C -0.049 4.049 9 C -0.167 4.167 10 C 0.272 3.728 11 O -0.471 6.471 12 N -0.122 5.122 13 C -0.434 4.434 14 H 0.122 0.878 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.746 3.254 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.207 1.207 21 C 0.022 3.978 22 C -0.252 4.252 23 C -0.193 4.193 24 C 0.002 3.998 25 N -0.234 5.234 26 C -0.099 4.099 27 C 0.029 3.971 28 H 0.089 0.911 29 C -0.202 4.202 30 O -0.296 6.296 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.180 0.820 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.914 6.359 -18.184 20.151 hybrid contribution 1.081 -1.361 1.092 2.053 sum -4.834 4.998 -17.092 18.452 Atomic orbital electron populations 1.22303 0.95607 1.03340 1.02141 1.22392 0.94351 0.96215 0.84219 0.87400 1.22650 1.00157 0.87020 0.99160 1.59221 1.55577 1.03553 1.00675 1.19726 0.91850 0.90041 0.91374 1.21066 1.05921 0.94025 1.00372 1.21178 0.92444 1.00326 0.90984 1.21097 1.02290 0.95868 0.97477 1.17550 0.82386 0.86877 0.85954 1.90635 1.54206 1.40035 1.62221 1.43116 1.10681 1.34006 1.24349 1.19733 1.13928 1.06807 1.02955 0.87767 1.25223 0.98328 0.95478 0.97504 1.69954 1.23569 1.13161 1.43118 0.85976 0.79147 0.80562 0.79763 1.19164 1.20532 1.20675 1.21344 0.93970 0.94314 0.88134 1.23605 1.04878 1.02567 0.94190 1.22931 0.92715 1.01511 1.02129 1.22964 0.92639 0.91380 0.92861 1.67605 1.12841 1.39380 1.03584 1.22997 0.99175 0.99150 0.88537 1.22161 0.99130 0.81933 0.93892 0.91072 1.21750 1.02004 1.00340 0.96141 1.88047 1.75593 1.22888 1.43094 0.91516 0.92369 0.91197 0.88513 0.92210 0.85101 0.84547 0.92082 0.86187 0.89841 0.89141 0.89458 0.89422 0.81976 0.92723 0.88930 0.91721 0.90822 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.89 37.16 0.33 -1.23 16 2 C 0.09 0.85 3.92 -26.67 -0.10 0.74 16 3 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.04 0.44 4.22 -3.71 -0.02 0.43 16 5 N -0.47 -5.83 4.11 -172.92 -0.71 -6.54 16 6 C 0.30 4.49 6.40 -155.26 -0.99 3.49 16 7 C -0.19 -2.76 9.14 -39.65 -0.36 -3.13 16 8 C -0.02 -0.39 9.75 -39.27 -0.38 -0.77 16 9 C -0.16 -3.19 3.84 -104.82 -0.40 -3.59 16 10 C 0.48 11.83 7.19 -12.51 -0.09 11.74 16 11 O -0.59 -16.34 16.61 5.25 0.09 -16.25 16 12 N -0.41 -10.05 2.93 -108.93 -0.32 -10.37 16 13 C -0.31 -8.25 9.23 -14.99 -0.14 -8.39 16 14 H 0.10 2.97 7.37 -52.48 -0.39 2.58 16 15 C 0.04 1.01 4.91 -17.45 -0.09 0.92 16 16 N -0.86 -21.56 10.60 55.50 0.59 -20.97 16 17 Si 0.92 20.00 29.59 -169.99 -5.03 14.97 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.13 2.73 2.14 -67.93 -0.15 2.58 16 22 C -0.21 -3.88 7.11 -26.70 -0.19 -4.07 16 23 C -0.15 -3.06 9.36 -26.69 -0.25 -3.31 16 24 C 0.16 2.90 7.66 -17.10 -0.13 2.77 16 25 N -0.52 -8.56 8.66 -12.12 -0.11 -8.67 16 26 C 0.03 0.29 4.67 -3.71 -0.02 0.27 16 27 C 0.09 0.80 3.03 -26.68 -0.08 0.71 16 28 H 0.07 0.62 6.49 -51.93 -0.34 0.29 16 29 C -0.14 -1.04 9.57 37.16 0.36 -0.68 16 30 O -0.38 -4.09 10.28 -35.23 -0.36 -4.45 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.67 6.13 -51.93 -0.32 0.36 16 34 H 0.10 1.20 7.85 -51.93 -0.41 0.79 16 35 H 0.06 0.78 8.02 -51.93 -0.42 0.37 16 36 H 0.13 1.52 7.16 -52.48 -0.38 1.14 16 37 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16 39 H 0.12 2.68 6.99 -51.93 -0.36 2.31 16 40 H 0.08 1.57 6.98 -51.93 -0.36 1.21 16 41 H 0.09 1.50 8.06 -51.93 -0.42 1.08 16 42 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 44 H 0.16 3.00 5.93 -52.49 -0.31 2.69 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.84 6.80 -51.93 -0.35 0.49 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -29.82 382.56 -10.20 -40.02 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.41 Total: 8.00 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.70 Total: -1.50 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.55 Total: -46.55 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.28 Total: -20.70 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.82 -10.20 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299278734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.415 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds