Wall clock time and date at job start Wed Apr 1 2020 03:15:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09003 * 109.50802 * 2 1
4 4 C 1.53103 * 109.50393 * 120.08660 * 2 1 3
5 5 N 1.47015 * 109.25674 * 63.13029 * 4 2 1
6 6 C 1.38473 * 110.99647 * 182.39061 * 5 4 2
7 7 C 1.39406 * 119.52788 * 180.02562 * 6 5 4
8 8 C 1.36845 * 119.38387 * 179.97438 * 7 6 5
9 9 C 1.40406 * 118.48813 * 359.74535 * 8 7 6
10 10 C 1.47435 * 120.48375 * 180.24930 * 9 8 7
11 11 O 1.21627 * 120.00037 * 318.80719 * 10 9 8
12 12 N 1.34777 * 120.00002 * 138.80689 * 10 9 8
13 13 C 1.36908 * 119.99960 * 183.00689 * 12 10 9
14 14 H 1.08004 * 120.00252 * 16.88516 * 13 12 10
15 15 C 1.39021 * 120.00086 * 196.88313 * 13 12 10
16 16 N 1.31390 * 119.99799 * 17.37495 * 15 13 12
17 17 Si 1.86801 * 120.00062 * 197.37476 * 15 13 12
18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47107 * 120.00151 * 17 15 13
20 20 H 1.48499 * 109.46954 * 240.00137 * 17 15 13
21 21 C 1.46502 * 120.00058 * 3.00769 * 12 10 9
22 22 C 1.52994 * 117.49872 * 310.51836 * 21 12 10
23 23 C 1.52998 * 117.50293 * 241.85474 * 21 12 10
24 24 C 1.39633 * 119.03618 * 0.49396 * 9 8 7
25 25 N 1.31670 * 120.50562 * 359.50145 * 24 9 8
26 26 C 1.47014 * 110.75255 * 58.61254 * 5 4 2
27 27 C 1.53093 * 109.25922 * 301.38138 * 26 5 4
28 28 H 1.08996 * 109.51044 * 296.91882 * 27 26 5
29 29 C 1.53006 * 109.54159 * 176.80553 * 27 26 5
30 30 O 1.43017 * 109.25948 * 56.85389 * 27 26 5
31 31 H 1.09006 * 109.46692 * 299.91734 * 1 2 3
32 32 H 1.08999 * 109.47091 * 59.91159 * 1 2 3
33 33 H 1.09002 * 109.47174 * 179.91392 * 1 2 3
34 34 H 1.08993 * 109.50647 * 303.19357 * 4 2 1
35 35 H 1.09003 * 109.50126 * 183.05978 * 4 2 1
36 36 H 1.08004 * 120.31047 * 359.97438 * 7 6 5
37 37 H 1.07999 * 120.75839 * 180.02562 * 8 7 6
38 38 H 0.97002 * 119.99478 * 184.94054 * 16 15 13
39 39 H 1.09005 * 115.54743 * 96.18844 * 21 12 10
40 40 H 1.09000 * 117.50247 * 359.97438 * 22 21 12
41 41 H 1.09006 * 117.50220 * 145.02256 * 22 21 12
42 42 H 1.08992 * 117.50144 * 214.97909 * 23 21 12
43 43 H 1.09004 * 117.49131 * 0.02562 * 23 21 12
44 44 H 1.07992 * 119.74583 * 179.77234 * 24 9 8
45 45 H 1.08999 * 109.50371 * 61.32065 * 26 5 4
46 46 H 1.08998 * 109.50215 * 181.44634 * 26 5 4
47 47 H 1.08998 * 109.47092 * 300.19649 * 29 27 26
48 48 H 1.09004 * 109.46676 * 60.19768 * 29 27 26
49 49 H 1.08998 * 109.46760 * 180.19737 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8941 1.0275 0.0000
4 6 2.0412 -0.7235 1.2487
5 7 1.6118 -2.1288 1.2048
6 6 2.0102 -2.8053 2.3455
7 6 1.6949 -4.1556 2.4889
8 6 2.0904 -4.8214 3.6171
9 6 2.8099 -4.1148 4.5941
10 6 3.2625 -4.7900 5.8241
11 8 2.5265 -5.5729 6.3940
12 7 4.4917 -4.5398 6.3170
13 6 4.9353 -5.2124 7.4238
14 1 4.4387 -6.1176 7.7409
15 6 6.0251 -4.7303 8.1398
16 7 6.4160 -3.4858 7.9823
17 14 6.9338 -5.8518 9.3255
18 1 6.3000 -7.1948 9.3208
19 1 8.3527 -5.9720 8.9043
20 1 6.8705 -5.2800 10.6946
21 6 5.3530 -3.5481 5.6683
22 6 5.5320 -3.6515 4.1524
23 6 6.6810 -4.0378 5.0872
24 6 3.0862 -2.7619 4.3862
25 7 2.6866 -2.1596 3.2856
26 6 2.1202 -2.7912 -0.0052
27 6 1.6082 -2.0471 -1.2413
28 1 0.5205 -2.1072 -1.2777
29 6 2.1976 -2.6828 -2.5020
30 8 2.0084 -0.6761 -1.1660
31 1 -0.3633 0.5126 0.8908
32 1 -0.3633 0.5152 -0.8892
33 1 -0.3633 -1.0277 -0.0015
34 1 1.6326 -0.2457 2.1391
35 1 3.1299 -0.6762 1.2766
36 1 1.1435 -4.6716 1.7167
37 1 1.8585 -5.8676 3.7510
38 1 7.2184 -3.1696 8.4264
39 1 5.3328 -2.5499 6.1058
40 1 5.0093 -4.4576 3.6377
41 1 5.6300 -2.7213 3.5925
42 1 7.5341 -3.3617 5.1420
43 1 6.9134 -5.0980 5.1872
44 1 3.6355 -2.2065 5.1318
45 1 3.2101 -2.7770 0.0028
46 1 1.7692 -3.8229 -0.0301
47 1 3.2853 -2.6237 -2.4642
48 1 1.8922 -3.7276 -2.5589
49 1 1.8351 -2.1499 -3.3811
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299278734.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:15:30
Heat of formation + Delta-G solvation = 18.391144 kcal
Electronic energy + Delta-G solvation = -31407.145268 eV
Core-core repulsion = 27336.407466 eV
Total energy + Delta-G solvation = -4070.737802 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-40.97847 -39.76613 -38.37904 -36.17724 -35.69323 -33.72171 -33.21242 -32.16678
-31.33414 -30.86029 -29.48785 -27.21256 -26.01621 -24.78079 -23.65796 -22.84320
-22.18837 -21.58419 -21.35833 -19.73035 -19.33753 -17.67293 -17.09759 -16.90402
-16.52017 -15.97718 -15.54045 -15.35531 -15.24022 -14.99208 -14.61511 -14.25644
-14.09934 -14.02096 -13.63768 -13.35902 -13.22464 -12.80699 -12.77148 -12.63849
-12.48805 -12.28549 -12.14760 -12.08284 -11.87253 -11.62699 -11.33357 -11.24768
-11.15314 -10.87060 -10.58383 -10.49767 -10.38384 -10.21772 -9.98942 -9.66515
-9.56469 -9.44977 -9.17860 -8.94615 -8.48600 -7.89896 -7.82774 -6.42589
-3.93207 1.21221 1.62068 3.09155 3.21691 3.27755 3.31234 3.50210
3.74378 4.01546 4.25587 4.39075 4.55867 4.59618 4.63214 4.74382
4.80557 4.90737 4.93541 5.07552 5.10324 5.16365 5.20827 5.29297
5.32205 5.34620 5.40634 5.47857 5.57052 5.59395 5.67297 5.68045
5.82527 5.83825 5.85804 5.89564 5.98148 6.07308 6.09037 6.18777
6.22796 6.47818 6.59620 6.65513 6.69887 6.81094 6.98580 7.07652
7.23076 7.46774 7.96771 8.20368 8.36559 9.06564 9.28954 9.85281
10.60103
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.022209 B = 0.002707 C = 0.002647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1260.443003 B =10342.457302 C =10576.012556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.086 3.914
3 H 0.108 0.892
4 C 0.037 3.963
5 N -0.472 5.472
6 C 0.302 3.698
7 C -0.191 4.191
8 C -0.023 4.023
9 C -0.161 4.161
10 C 0.483 3.517
11 O -0.585 6.585
12 N -0.405 5.405
13 C -0.307 4.307
14 H 0.105 0.895
15 C 0.040 3.960
16 N -0.861 5.861
17 Si 0.919 3.081
18 H -0.267 1.267
19 H -0.280 1.280
20 H -0.281 1.281
21 C 0.128 3.872
22 C -0.214 4.214
23 C -0.155 4.155
24 C 0.160 3.840
25 N -0.520 5.520
26 C 0.028 3.972
27 C 0.087 3.913
28 H 0.071 0.929
29 C -0.145 4.145
30 O -0.377 6.377
31 H 0.066 0.934
32 H 0.057 0.943
33 H 0.069 0.931
34 H 0.097 0.903
35 H 0.060 0.940
36 H 0.131 0.869
37 H 0.137 0.863
38 H 0.269 0.731
39 H 0.121 0.879
40 H 0.083 0.917
41 H 0.090 0.910
42 H 0.087 0.913
43 H 0.087 0.913
44 H 0.163 0.837
45 H 0.054 0.946
46 H 0.092 0.908
47 H 0.064 0.936
48 H 0.073 0.927
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.478 5.619 -18.296 19.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.028 3.972
3 H 0.126 0.874
4 C -0.090 4.090
5 N -0.190 5.190
6 C 0.070 3.930
7 C -0.214 4.214
8 C -0.049 4.049
9 C -0.167 4.167
10 C 0.272 3.728
11 O -0.471 6.471
12 N -0.122 5.122
13 C -0.434 4.434
14 H 0.122 0.878
15 C -0.165 4.165
16 N -0.498 5.498
17 Si 0.746 3.254
18 H -0.192 1.192
19 H -0.205 1.205
20 H -0.207 1.207
21 C 0.022 3.978
22 C -0.252 4.252
23 C -0.193 4.193
24 C 0.002 3.998
25 N -0.234 5.234
26 C -0.099 4.099
27 C 0.029 3.971
28 H 0.089 0.911
29 C -0.202 4.202
30 O -0.296 6.296
31 H 0.085 0.915
32 H 0.076 0.924
33 H 0.088 0.912
34 H 0.115 0.885
35 H 0.078 0.922
36 H 0.149 0.851
37 H 0.155 0.845
38 H 0.079 0.921
39 H 0.138 0.862
40 H 0.102 0.898
41 H 0.109 0.891
42 H 0.105 0.895
43 H 0.106 0.894
44 H 0.180 0.820
45 H 0.073 0.927
46 H 0.111 0.889
47 H 0.083 0.917
48 H 0.092 0.908
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -5.914 6.359 -18.184 20.151
hybrid contribution 1.081 -1.361 1.092 2.053
sum -4.834 4.998 -17.092 18.452
Atomic orbital electron populations
1.22303 0.95607 1.03340 1.02141 1.22392 0.94351 0.96215 0.84219
0.87400 1.22650 1.00157 0.87020 0.99160 1.59221 1.55577 1.03553
1.00675 1.19726 0.91850 0.90041 0.91374 1.21066 1.05921 0.94025
1.00372 1.21178 0.92444 1.00326 0.90984 1.21097 1.02290 0.95868
0.97477 1.17550 0.82386 0.86877 0.85954 1.90635 1.54206 1.40035
1.62221 1.43116 1.10681 1.34006 1.24349 1.19733 1.13928 1.06807
1.02955 0.87767 1.25223 0.98328 0.95478 0.97504 1.69954 1.23569
1.13161 1.43118 0.85976 0.79147 0.80562 0.79763 1.19164 1.20532
1.20675 1.21344 0.93970 0.94314 0.88134 1.23605 1.04878 1.02567
0.94190 1.22931 0.92715 1.01511 1.02129 1.22964 0.92639 0.91380
0.92861 1.67605 1.12841 1.39380 1.03584 1.22997 0.99175 0.99150
0.88537 1.22161 0.99130 0.81933 0.93892 0.91072 1.21750 1.02004
1.00340 0.96141 1.88047 1.75593 1.22888 1.43094 0.91516 0.92369
0.91197 0.88513 0.92210 0.85101 0.84547 0.92082 0.86187 0.89841
0.89141 0.89458 0.89422 0.81976 0.92723 0.88930 0.91721 0.90822
0.91419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.56 8.89 37.16 0.33 -1.23 16
2 C 0.09 0.85 3.92 -26.67 -0.10 0.74 16
3 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
4 C 0.04 0.44 4.22 -3.71 -0.02 0.43 16
5 N -0.47 -5.83 4.11 -172.92 -0.71 -6.54 16
6 C 0.30 4.49 6.40 -155.26 -0.99 3.49 16
7 C -0.19 -2.76 9.14 -39.65 -0.36 -3.13 16
8 C -0.02 -0.39 9.75 -39.27 -0.38 -0.77 16
9 C -0.16 -3.19 3.84 -104.82 -0.40 -3.59 16
10 C 0.48 11.83 7.19 -12.51 -0.09 11.74 16
11 O -0.59 -16.34 16.61 5.25 0.09 -16.25 16
12 N -0.41 -10.05 2.93 -108.93 -0.32 -10.37 16
13 C -0.31 -8.25 9.23 -14.99 -0.14 -8.39 16
14 H 0.10 2.97 7.37 -52.48 -0.39 2.58 16
15 C 0.04 1.01 4.91 -17.45 -0.09 0.92 16
16 N -0.86 -21.56 10.60 55.50 0.59 -20.97 16
17 Si 0.92 20.00 29.59 -169.99 -5.03 14.97 16
18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16
20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
21 C 0.13 2.73 2.14 -67.93 -0.15 2.58 16
22 C -0.21 -3.88 7.11 -26.70 -0.19 -4.07 16
23 C -0.15 -3.06 9.36 -26.69 -0.25 -3.31 16
24 C 0.16 2.90 7.66 -17.10 -0.13 2.77 16
25 N -0.52 -8.56 8.66 -12.12 -0.11 -8.67 16
26 C 0.03 0.29 4.67 -3.71 -0.02 0.27 16
27 C 0.09 0.80 3.03 -26.68 -0.08 0.71 16
28 H 0.07 0.62 6.49 -51.93 -0.34 0.29 16
29 C -0.14 -1.04 9.57 37.16 0.36 -0.68 16
30 O -0.38 -4.09 10.28 -35.23 -0.36 -4.45 16
31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
33 H 0.07 0.67 6.13 -51.93 -0.32 0.36 16
34 H 0.10 1.20 7.85 -51.93 -0.41 0.79 16
35 H 0.06 0.78 8.02 -51.93 -0.42 0.37 16
36 H 0.13 1.52 7.16 -52.48 -0.38 1.14 16
37 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16
38 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16
39 H 0.12 2.68 6.99 -51.93 -0.36 2.31 16
40 H 0.08 1.57 6.98 -51.93 -0.36 1.21 16
41 H 0.09 1.50 8.06 -51.93 -0.42 1.08 16
42 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16
43 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16
44 H 0.16 3.00 5.93 -52.49 -0.31 2.69 16
45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
46 H 0.09 0.84 6.80 -51.93 -0.35 0.49 16
47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
49 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
LS Contribution 382.56 15.07 5.77 5.77
Total: -1.00 -29.82 382.56 -10.20 -40.02
By element:
Atomic # 1 Polarization: 15.41 SS G_CDS: -7.41 Total: 8.00 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: -2.70 Total: -1.50 kcal
Atomic # 7 Polarization: -46.00 SS G_CDS: -0.55 Total: -46.55 kcal
Atomic # 8 Polarization: -20.43 SS G_CDS: -0.28 Total: -20.70 kcal
Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -29.82 -10.20 -40.02 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299278734.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.415 kcal
(2) G-P(sol) polarization free energy of solvation -29.822 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds