Wall clock time and date at job start Wed Apr 1 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.50802 * 2 1 4 4 C 1.53103 * 109.50393 * 120.08660 * 2 1 3 5 5 N 1.47015 * 109.25674 * 63.13029 * 4 2 1 6 6 C 1.38473 * 110.99647 * 182.39061 * 5 4 2 7 7 C 1.39406 * 119.52788 * 180.02562 * 6 5 4 8 8 C 1.36845 * 119.38387 * 179.97438 * 7 6 5 9 9 C 1.40406 * 118.48813 * 359.74535 * 8 7 6 10 10 C 1.47435 * 120.48375 * 180.24930 * 9 8 7 11 11 O 1.21627 * 120.00037 * 318.80719 * 10 9 8 12 12 N 1.34777 * 120.00002 * 138.80689 * 10 9 8 13 13 C 1.36908 * 119.99960 * 183.00689 * 12 10 9 14 14 H 1.08004 * 120.00252 * 16.88516 * 13 12 10 15 15 C 1.39021 * 120.00086 * 196.88313 * 13 12 10 16 16 N 1.31390 * 119.99799 * 17.37495 * 15 13 12 17 17 Si 1.86801 * 120.00062 * 197.37476 * 15 13 12 18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47107 * 120.00151 * 17 15 13 20 20 H 1.48499 * 109.46954 * 240.00137 * 17 15 13 21 21 C 1.46502 * 120.00058 * 3.00769 * 12 10 9 22 22 C 1.52994 * 117.49872 * 310.51836 * 21 12 10 23 23 C 1.52998 * 117.50293 * 241.85474 * 21 12 10 24 24 C 1.39633 * 119.03618 * 0.49396 * 9 8 7 25 25 N 1.31670 * 120.50562 * 359.50145 * 24 9 8 26 26 C 1.47014 * 110.75255 * 58.61254 * 5 4 2 27 27 C 1.53093 * 109.25922 * 301.38138 * 26 5 4 28 28 H 1.08996 * 109.51044 * 296.91882 * 27 26 5 29 29 C 1.53006 * 109.54159 * 176.80553 * 27 26 5 30 30 O 1.43017 * 109.25948 * 56.85389 * 27 26 5 31 31 H 1.09006 * 109.46692 * 299.91734 * 1 2 3 32 32 H 1.08999 * 109.47091 * 59.91159 * 1 2 3 33 33 H 1.09002 * 109.47174 * 179.91392 * 1 2 3 34 34 H 1.08993 * 109.50647 * 303.19357 * 4 2 1 35 35 H 1.09003 * 109.50126 * 183.05978 * 4 2 1 36 36 H 1.08004 * 120.31047 * 359.97438 * 7 6 5 37 37 H 1.07999 * 120.75839 * 180.02562 * 8 7 6 38 38 H 0.97002 * 119.99478 * 184.94054 * 16 15 13 39 39 H 1.09005 * 115.54743 * 96.18844 * 21 12 10 40 40 H 1.09000 * 117.50247 * 359.97438 * 22 21 12 41 41 H 1.09006 * 117.50220 * 145.02256 * 22 21 12 42 42 H 1.08992 * 117.50144 * 214.97909 * 23 21 12 43 43 H 1.09004 * 117.49131 * 0.02562 * 23 21 12 44 44 H 1.07992 * 119.74583 * 179.77234 * 24 9 8 45 45 H 1.08999 * 109.50371 * 61.32065 * 26 5 4 46 46 H 1.08998 * 109.50215 * 181.44634 * 26 5 4 47 47 H 1.08998 * 109.47092 * 300.19649 * 29 27 26 48 48 H 1.09004 * 109.46676 * 60.19768 * 29 27 26 49 49 H 1.08998 * 109.46760 * 180.19737 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 1.6118 -2.1288 1.2048 6 6 2.0102 -2.8053 2.3455 7 6 1.6949 -4.1556 2.4889 8 6 2.0904 -4.8214 3.6171 9 6 2.8099 -4.1148 4.5941 10 6 3.2625 -4.7900 5.8241 11 8 2.5265 -5.5729 6.3940 12 7 4.4917 -4.5398 6.3170 13 6 4.9353 -5.2124 7.4238 14 1 4.4387 -6.1176 7.7409 15 6 6.0251 -4.7303 8.1398 16 7 6.4160 -3.4858 7.9823 17 14 6.9338 -5.8518 9.3255 18 1 6.3000 -7.1948 9.3208 19 1 8.3527 -5.9720 8.9043 20 1 6.8705 -5.2800 10.6946 21 6 5.3530 -3.5481 5.6683 22 6 5.5320 -3.6515 4.1524 23 6 6.6810 -4.0378 5.0872 24 6 3.0862 -2.7619 4.3862 25 7 2.6866 -2.1596 3.2856 26 6 2.1202 -2.7912 -0.0052 27 6 1.6082 -2.0471 -1.2413 28 1 0.5205 -2.1072 -1.2777 29 6 2.1976 -2.6828 -2.5020 30 8 2.0084 -0.6761 -1.1660 31 1 -0.3633 0.5126 0.8908 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6326 -0.2457 2.1391 35 1 3.1299 -0.6762 1.2766 36 1 1.1435 -4.6716 1.7167 37 1 1.8585 -5.8676 3.7510 38 1 7.2184 -3.1696 8.4264 39 1 5.3328 -2.5499 6.1058 40 1 5.0093 -4.4576 3.6377 41 1 5.6300 -2.7213 3.5925 42 1 7.5341 -3.3617 5.1420 43 1 6.9134 -5.0980 5.1872 44 1 3.6355 -2.2065 5.1318 45 1 3.2101 -2.7770 0.0028 46 1 1.7692 -3.8229 -0.0301 47 1 3.2853 -2.6237 -2.4642 48 1 1.8922 -3.7276 -2.5589 49 1 1.8351 -2.1499 -3.3811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299278734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:29 Heat of formation + Delta-G solvation = 0.873077 kcal Electronic energy + Delta-G solvation = -31407.904908 eV Core-core repulsion = 27336.407466 eV Total energy + Delta-G solvation = -4071.497442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16173 -41.05935 -39.80436 -37.98024 -36.79261 -35.04966 -34.47814 -33.46461 -33.16822 -31.96319 -30.57006 -28.03081 -27.48395 -26.21945 -24.84362 -24.12090 -23.41215 -23.01568 -22.86031 -21.08879 -20.46499 -19.12067 -18.60080 -18.21987 -17.74487 -17.16496 -17.08413 -16.52528 -16.33989 -16.14298 -15.90847 -15.73554 -15.47324 -15.36095 -15.15719 -14.77301 -14.32377 -14.15176 -14.03024 -13.84406 -13.66612 -13.29685 -13.09519 -13.07006 -12.93751 -12.85011 -12.68066 -12.52587 -12.36930 -12.35953 -12.13720 -12.04747 -11.85991 -11.39423 -11.29984 -11.12742 -10.86006 -10.79735 -10.63172 -10.34080 -10.26573 -9.81460 -9.09614 -8.35358 -5.96137 -0.15303 0.29548 1.34738 1.41357 1.53508 1.93276 2.22792 2.35210 2.76687 2.79419 2.85886 2.98265 3.17512 3.36469 3.74077 3.75357 3.82424 3.94531 4.00625 4.06931 4.08261 4.12069 4.13523 4.23414 4.26425 4.39256 4.44276 4.45022 4.62757 4.67197 4.68357 4.68814 4.76915 4.82830 4.93922 4.99991 5.01203 5.05392 5.13010 5.18708 5.25587 5.29372 5.36038 5.36655 5.40682 5.44866 5.59579 5.99989 6.04578 6.24663 6.44327 6.88626 7.11064 7.38413 7.95363 8.65579 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.002707 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.443003 B =10342.457302 C =10576.012556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.089 3.911 3 H 0.122 0.878 4 C 0.039 3.961 5 N -0.468 5.468 6 C 0.311 3.689 7 C -0.176 4.176 8 C -0.023 4.023 9 C -0.187 4.187 10 C 0.474 3.526 11 O -0.635 6.635 12 N -0.415 5.415 13 C -0.348 4.348 14 H 0.073 0.927 15 C 0.016 3.984 16 N -0.869 5.869 17 Si 0.978 3.022 18 H -0.276 1.276 19 H -0.264 1.264 20 H -0.276 1.276 21 C 0.110 3.890 22 C -0.174 4.174 23 C -0.154 4.154 24 C 0.166 3.834 25 N -0.524 5.524 26 C 0.026 3.974 27 C 0.086 3.914 28 H 0.080 0.920 29 C -0.142 4.142 30 O -0.390 6.390 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.169 0.831 37 H 0.138 0.862 38 H 0.276 0.724 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.153 0.847 45 H 0.045 0.955 46 H 0.112 0.888 47 H 0.057 0.943 48 H 0.092 0.908 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 6.431 -21.104 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.139 0.861 4 C -0.089 4.089 5 N -0.185 5.185 6 C 0.078 3.922 7 C -0.198 4.198 8 C -0.050 4.050 9 C -0.193 4.193 10 C 0.265 3.735 11 O -0.525 6.525 12 N -0.130 5.130 13 C -0.475 4.475 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.506 5.506 17 Si 0.802 3.198 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.202 1.202 21 C 0.005 3.995 22 C -0.212 4.212 23 C -0.192 4.192 24 C 0.008 3.992 25 N -0.239 5.239 26 C -0.100 4.100 27 C 0.029 3.971 28 H 0.097 0.903 29 C -0.199 4.199 30 O -0.310 6.310 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.187 0.813 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.171 0.829 45 H 0.064 0.936 46 H 0.130 0.870 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.937 7.213 -21.029 23.011 hybrid contribution 0.989 -1.518 1.843 2.584 sum -4.948 5.694 -19.186 20.616 Atomic orbital electron populations 1.22250 0.94654 1.03085 1.02827 1.22443 0.95017 0.96489 0.82955 0.86084 1.22663 0.99319 0.86776 1.00099 1.59260 1.54823 1.03916 1.00481 1.20142 0.90060 0.90371 0.91607 1.21334 1.04869 0.93703 0.99937 1.21276 0.91901 1.00579 0.91226 1.20737 1.05191 0.96624 0.96789 1.18303 0.81863 0.86251 0.87075 1.90570 1.55498 1.42296 1.64102 1.43259 1.11298 1.34238 1.24203 1.19604 1.15577 1.07039 1.05295 0.90925 1.25854 0.98058 0.96647 0.98342 1.70006 1.23675 1.13641 1.43233 0.85115 0.78429 0.78351 0.77907 1.20126 1.18834 1.20169 1.21255 0.94940 0.93011 0.90258 1.23484 1.02465 1.03088 0.92125 1.22932 0.92932 1.00863 1.02439 1.22709 0.92722 0.90527 0.93239 1.67669 1.13467 1.39310 1.03408 1.23162 0.98703 1.00285 0.87819 1.22314 0.99699 0.81136 0.93999 0.90250 1.21770 1.01488 1.01415 0.95242 1.88049 1.75943 1.23790 1.43201 0.91254 0.91304 0.91853 0.89329 0.93552 0.81337 0.84389 0.91410 0.87431 0.90239 0.86868 0.87971 0.90971 0.82946 0.93642 0.86973 0.92375 0.88887 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.89 71.98 0.64 -1.91 16 2 C 0.09 1.52 3.92 30.63 0.12 1.64 16 3 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.04 0.84 4.22 86.32 0.36 1.20 16 5 N -0.47 -10.26 4.11 -700.99 -2.88 -13.14 16 6 C 0.31 8.53 6.40 133.25 0.85 9.38 16 7 C -0.18 -4.62 9.14 22.22 0.20 -4.42 16 8 C -0.02 -0.78 9.75 22.47 0.22 -0.56 16 9 C -0.19 -7.54 3.84 -19.99 -0.08 -7.62 16 10 C 0.47 24.43 7.19 86.67 0.62 25.06 16 11 O -0.64 -37.69 16.61 -4.12 -0.07 -37.76 16 12 N -0.41 -21.57 2.93 -616.80 -1.81 -23.38 16 13 C -0.35 -19.69 9.23 84.09 0.78 -18.91 16 14 H 0.07 4.46 7.37 -2.91 -0.02 4.44 16 15 C 0.02 0.82 4.91 84.95 0.42 1.24 16 16 N -0.87 -43.98 10.60 21.68 0.23 -43.76 16 17 Si 0.98 41.65 29.59 68.60 2.03 43.68 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 20 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.11 4.81 2.14 44.99 0.10 4.90 16 22 C -0.17 -6.18 7.11 30.62 0.22 -5.96 16 23 C -0.15 -6.05 9.36 30.62 0.29 -5.77 16 24 C 0.17 6.03 7.66 85.05 0.65 6.68 16 25 N -0.52 -16.63 8.66 -192.26 -1.67 -18.30 16 26 C 0.03 0.45 4.67 86.31 0.40 0.86 16 27 C 0.09 1.30 3.03 30.63 0.09 1.39 16 28 H 0.08 1.10 6.49 -2.39 -0.02 1.08 16 29 C -0.14 -1.57 9.57 71.98 0.69 -0.88 16 30 O -0.39 -7.41 10.28 -148.98 -1.53 -8.94 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.03 6.13 -2.39 -0.01 1.02 16 34 H 0.09 2.06 7.85 -2.39 -0.02 2.05 16 35 H 0.05 1.14 8.02 -2.39 -0.02 1.12 16 36 H 0.17 3.14 7.16 -2.91 -0.02 3.12 16 37 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.28 12.99 8.32 -92.71 -0.77 12.22 16 39 H 0.11 4.94 6.99 -2.38 -0.02 4.92 16 40 H 0.08 2.94 6.98 -2.39 -0.02 2.92 16 41 H 0.11 3.52 8.06 -2.38 -0.02 3.50 16 42 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 43 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 44 H 0.15 5.80 5.93 -2.91 -0.02 5.78 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 1.53 6.80 -2.39 -0.02 1.51 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -67.61 382.56 1.84 -65.77 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.96 Total: 29.48 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 6.58 Total: 6.33 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -6.12 Total: -98.56 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.60 Total: -46.70 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -67.61 1.84 -65.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299278734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.645 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds