Wall clock time and date at job start Wed Apr 1 2020 03:15:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09003 * 109.50802 * 2 1
4 4 C 1.53103 * 109.50393 * 120.08660 * 2 1 3
5 5 N 1.47015 * 109.25674 * 63.13029 * 4 2 1
6 6 C 1.38473 * 110.99647 * 182.39061 * 5 4 2
7 7 C 1.39406 * 119.52788 * 180.02562 * 6 5 4
8 8 C 1.36845 * 119.38387 * 179.97438 * 7 6 5
9 9 C 1.40406 * 118.48813 * 359.74535 * 8 7 6
10 10 C 1.47435 * 120.48375 * 180.24930 * 9 8 7
11 11 O 1.21627 * 120.00037 * 318.80719 * 10 9 8
12 12 N 1.34777 * 120.00002 * 138.80689 * 10 9 8
13 13 C 1.36908 * 119.99960 * 183.00689 * 12 10 9
14 14 H 1.08004 * 120.00252 * 16.88516 * 13 12 10
15 15 C 1.39021 * 120.00086 * 196.88313 * 13 12 10
16 16 N 1.31390 * 119.99799 * 17.37495 * 15 13 12
17 17 Si 1.86801 * 120.00062 * 197.37476 * 15 13 12
18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47107 * 120.00151 * 17 15 13
20 20 H 1.48499 * 109.46954 * 240.00137 * 17 15 13
21 21 C 1.46502 * 120.00058 * 3.00769 * 12 10 9
22 22 C 1.52994 * 117.49872 * 310.51836 * 21 12 10
23 23 C 1.52998 * 117.50293 * 241.85474 * 21 12 10
24 24 C 1.39633 * 119.03618 * 0.49396 * 9 8 7
25 25 N 1.31670 * 120.50562 * 359.50145 * 24 9 8
26 26 C 1.47014 * 110.75255 * 58.61254 * 5 4 2
27 27 C 1.53093 * 109.25922 * 301.38138 * 26 5 4
28 28 H 1.08996 * 109.51044 * 296.91882 * 27 26 5
29 29 C 1.53006 * 109.54159 * 176.80553 * 27 26 5
30 30 O 1.43017 * 109.25948 * 56.85389 * 27 26 5
31 31 H 1.09006 * 109.46692 * 299.91734 * 1 2 3
32 32 H 1.08999 * 109.47091 * 59.91159 * 1 2 3
33 33 H 1.09002 * 109.47174 * 179.91392 * 1 2 3
34 34 H 1.08993 * 109.50647 * 303.19357 * 4 2 1
35 35 H 1.09003 * 109.50126 * 183.05978 * 4 2 1
36 36 H 1.08004 * 120.31047 * 359.97438 * 7 6 5
37 37 H 1.07999 * 120.75839 * 180.02562 * 8 7 6
38 38 H 0.97002 * 119.99478 * 184.94054 * 16 15 13
39 39 H 1.09005 * 115.54743 * 96.18844 * 21 12 10
40 40 H 1.09000 * 117.50247 * 359.97438 * 22 21 12
41 41 H 1.09006 * 117.50220 * 145.02256 * 22 21 12
42 42 H 1.08992 * 117.50144 * 214.97909 * 23 21 12
43 43 H 1.09004 * 117.49131 * 0.02562 * 23 21 12
44 44 H 1.07992 * 119.74583 * 179.77234 * 24 9 8
45 45 H 1.08999 * 109.50371 * 61.32065 * 26 5 4
46 46 H 1.08998 * 109.50215 * 181.44634 * 26 5 4
47 47 H 1.08998 * 109.47092 * 300.19649 * 29 27 26
48 48 H 1.09004 * 109.46676 * 60.19768 * 29 27 26
49 49 H 1.08998 * 109.46760 * 180.19737 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8941 1.0275 0.0000
4 6 2.0412 -0.7235 1.2487
5 7 1.6118 -2.1288 1.2048
6 6 2.0102 -2.8053 2.3455
7 6 1.6949 -4.1556 2.4889
8 6 2.0904 -4.8214 3.6171
9 6 2.8099 -4.1148 4.5941
10 6 3.2625 -4.7900 5.8241
11 8 2.5265 -5.5729 6.3940
12 7 4.4917 -4.5398 6.3170
13 6 4.9353 -5.2124 7.4238
14 1 4.4387 -6.1176 7.7409
15 6 6.0251 -4.7303 8.1398
16 7 6.4160 -3.4858 7.9823
17 14 6.9338 -5.8518 9.3255
18 1 6.3000 -7.1948 9.3208
19 1 8.3527 -5.9720 8.9043
20 1 6.8705 -5.2800 10.6946
21 6 5.3530 -3.5481 5.6683
22 6 5.5320 -3.6515 4.1524
23 6 6.6810 -4.0378 5.0872
24 6 3.0862 -2.7619 4.3862
25 7 2.6866 -2.1596 3.2856
26 6 2.1202 -2.7912 -0.0052
27 6 1.6082 -2.0471 -1.2413
28 1 0.5205 -2.1072 -1.2777
29 6 2.1976 -2.6828 -2.5020
30 8 2.0084 -0.6761 -1.1660
31 1 -0.3633 0.5126 0.8908
32 1 -0.3633 0.5152 -0.8892
33 1 -0.3633 -1.0277 -0.0015
34 1 1.6326 -0.2457 2.1391
35 1 3.1299 -0.6762 1.2766
36 1 1.1435 -4.6716 1.7167
37 1 1.8585 -5.8676 3.7510
38 1 7.2184 -3.1696 8.4264
39 1 5.3328 -2.5499 6.1058
40 1 5.0093 -4.4576 3.6377
41 1 5.6300 -2.7213 3.5925
42 1 7.5341 -3.3617 5.1420
43 1 6.9134 -5.0980 5.1872
44 1 3.6355 -2.2065 5.1318
45 1 3.2101 -2.7770 0.0028
46 1 1.7692 -3.8229 -0.0301
47 1 3.2853 -2.6237 -2.4642
48 1 1.8922 -3.7276 -2.5589
49 1 1.8351 -2.1499 -3.3811
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000299278734.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:15:29
Heat of formation + Delta-G solvation = 0.873077 kcal
Electronic energy + Delta-G solvation = -31407.904908 eV
Core-core repulsion = 27336.407466 eV
Total energy + Delta-G solvation = -4071.497442 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.16173 -41.05935 -39.80436 -37.98024 -36.79261 -35.04966 -34.47814 -33.46461
-33.16822 -31.96319 -30.57006 -28.03081 -27.48395 -26.21945 -24.84362 -24.12090
-23.41215 -23.01568 -22.86031 -21.08879 -20.46499 -19.12067 -18.60080 -18.21987
-17.74487 -17.16496 -17.08413 -16.52528 -16.33989 -16.14298 -15.90847 -15.73554
-15.47324 -15.36095 -15.15719 -14.77301 -14.32377 -14.15176 -14.03024 -13.84406
-13.66612 -13.29685 -13.09519 -13.07006 -12.93751 -12.85011 -12.68066 -12.52587
-12.36930 -12.35953 -12.13720 -12.04747 -11.85991 -11.39423 -11.29984 -11.12742
-10.86006 -10.79735 -10.63172 -10.34080 -10.26573 -9.81460 -9.09614 -8.35358
-5.96137 -0.15303 0.29548 1.34738 1.41357 1.53508 1.93276 2.22792
2.35210 2.76687 2.79419 2.85886 2.98265 3.17512 3.36469 3.74077
3.75357 3.82424 3.94531 4.00625 4.06931 4.08261 4.12069 4.13523
4.23414 4.26425 4.39256 4.44276 4.45022 4.62757 4.67197 4.68357
4.68814 4.76915 4.82830 4.93922 4.99991 5.01203 5.05392 5.13010
5.18708 5.25587 5.29372 5.36038 5.36655 5.40682 5.44866 5.59579
5.99989 6.04578 6.24663 6.44327 6.88626 7.11064 7.38413 7.95363
8.65579
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.022209 B = 0.002707 C = 0.002647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1260.443003 B =10342.457302 C =10576.012556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.089 3.911
3 H 0.122 0.878
4 C 0.039 3.961
5 N -0.468 5.468
6 C 0.311 3.689
7 C -0.176 4.176
8 C -0.023 4.023
9 C -0.187 4.187
10 C 0.474 3.526
11 O -0.635 6.635
12 N -0.415 5.415
13 C -0.348 4.348
14 H 0.073 0.927
15 C 0.016 3.984
16 N -0.869 5.869
17 Si 0.978 3.022
18 H -0.276 1.276
19 H -0.264 1.264
20 H -0.276 1.276
21 C 0.110 3.890
22 C -0.174 4.174
23 C -0.154 4.154
24 C 0.166 3.834
25 N -0.524 5.524
26 C 0.026 3.974
27 C 0.086 3.914
28 H 0.080 0.920
29 C -0.142 4.142
30 O -0.390 6.390
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.062 0.938
34 H 0.088 0.912
35 H 0.046 0.954
36 H 0.169 0.831
37 H 0.138 0.862
38 H 0.276 0.724
39 H 0.108 0.892
40 H 0.079 0.921
41 H 0.113 0.887
42 H 0.102 0.898
43 H 0.072 0.928
44 H 0.153 0.847
45 H 0.045 0.955
46 H 0.112 0.888
47 H 0.057 0.943
48 H 0.092 0.908
49 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.524 6.431 -21.104 22.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.031 3.969
3 H 0.139 0.861
4 C -0.089 4.089
5 N -0.185 5.185
6 C 0.078 3.922
7 C -0.198 4.198
8 C -0.050 4.050
9 C -0.193 4.193
10 C 0.265 3.735
11 O -0.525 6.525
12 N -0.130 5.130
13 C -0.475 4.475
14 H 0.091 0.909
15 C -0.189 4.189
16 N -0.506 5.506
17 Si 0.802 3.198
18 H -0.201 1.201
19 H -0.188 1.188
20 H -0.202 1.202
21 C 0.005 3.995
22 C -0.212 4.212
23 C -0.192 4.192
24 C 0.008 3.992
25 N -0.239 5.239
26 C -0.100 4.100
27 C 0.029 3.971
28 H 0.097 0.903
29 C -0.199 4.199
30 O -0.310 6.310
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.081 0.919
34 H 0.107 0.893
35 H 0.064 0.936
36 H 0.187 0.813
37 H 0.156 0.844
38 H 0.086 0.914
39 H 0.126 0.874
40 H 0.098 0.902
41 H 0.131 0.869
42 H 0.120 0.880
43 H 0.090 0.910
44 H 0.171 0.829
45 H 0.064 0.936
46 H 0.130 0.870
47 H 0.076 0.924
48 H 0.111 0.889
49 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -5.937 7.213 -21.029 23.011
hybrid contribution 0.989 -1.518 1.843 2.584
sum -4.948 5.694 -19.186 20.616
Atomic orbital electron populations
1.22250 0.94654 1.03085 1.02827 1.22443 0.95017 0.96489 0.82955
0.86084 1.22663 0.99319 0.86776 1.00099 1.59260 1.54823 1.03916
1.00481 1.20142 0.90060 0.90371 0.91607 1.21334 1.04869 0.93703
0.99937 1.21276 0.91901 1.00579 0.91226 1.20737 1.05191 0.96624
0.96789 1.18303 0.81863 0.86251 0.87075 1.90570 1.55498 1.42296
1.64102 1.43259 1.11298 1.34238 1.24203 1.19604 1.15577 1.07039
1.05295 0.90925 1.25854 0.98058 0.96647 0.98342 1.70006 1.23675
1.13641 1.43233 0.85115 0.78429 0.78351 0.77907 1.20126 1.18834
1.20169 1.21255 0.94940 0.93011 0.90258 1.23484 1.02465 1.03088
0.92125 1.22932 0.92932 1.00863 1.02439 1.22709 0.92722 0.90527
0.93239 1.67669 1.13467 1.39310 1.03408 1.23162 0.98703 1.00285
0.87819 1.22314 0.99699 0.81136 0.93999 0.90250 1.21770 1.01488
1.01415 0.95242 1.88049 1.75943 1.23790 1.43201 0.91254 0.91304
0.91853 0.89329 0.93552 0.81337 0.84389 0.91410 0.87431 0.90239
0.86868 0.87971 0.90971 0.82946 0.93642 0.86973 0.92375 0.88887
0.90893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.55 8.89 71.98 0.64 -1.91 16
2 C 0.09 1.52 3.92 30.63 0.12 1.64 16
3 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16
4 C 0.04 0.84 4.22 86.32 0.36 1.20 16
5 N -0.47 -10.26 4.11 -700.99 -2.88 -13.14 16
6 C 0.31 8.53 6.40 133.25 0.85 9.38 16
7 C -0.18 -4.62 9.14 22.22 0.20 -4.42 16
8 C -0.02 -0.78 9.75 22.47 0.22 -0.56 16
9 C -0.19 -7.54 3.84 -19.99 -0.08 -7.62 16
10 C 0.47 24.43 7.19 86.67 0.62 25.06 16
11 O -0.64 -37.69 16.61 -4.12 -0.07 -37.76 16
12 N -0.41 -21.57 2.93 -616.80 -1.81 -23.38 16
13 C -0.35 -19.69 9.23 84.09 0.78 -18.91 16
14 H 0.07 4.46 7.37 -2.91 -0.02 4.44 16
15 C 0.02 0.82 4.91 84.95 0.42 1.24 16
16 N -0.87 -43.98 10.60 21.68 0.23 -43.76 16
17 Si 0.98 41.65 29.59 68.60 2.03 43.68 16
18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16
19 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16
20 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16
21 C 0.11 4.81 2.14 44.99 0.10 4.90 16
22 C -0.17 -6.18 7.11 30.62 0.22 -5.96 16
23 C -0.15 -6.05 9.36 30.62 0.29 -5.77 16
24 C 0.17 6.03 7.66 85.05 0.65 6.68 16
25 N -0.52 -16.63 8.66 -192.26 -1.67 -18.30 16
26 C 0.03 0.45 4.67 86.31 0.40 0.86 16
27 C 0.09 1.30 3.03 30.63 0.09 1.39 16
28 H 0.08 1.10 6.49 -2.39 -0.02 1.08 16
29 C -0.14 -1.57 9.57 71.98 0.69 -0.88 16
30 O -0.39 -7.41 10.28 -148.98 -1.53 -8.94 16
31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16
32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.06 1.03 6.13 -2.39 -0.01 1.02 16
34 H 0.09 2.06 7.85 -2.39 -0.02 2.05 16
35 H 0.05 1.14 8.02 -2.39 -0.02 1.12 16
36 H 0.17 3.14 7.16 -2.91 -0.02 3.12 16
37 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16
38 H 0.28 12.99 8.32 -92.71 -0.77 12.22 16
39 H 0.11 4.94 6.99 -2.38 -0.02 4.92 16
40 H 0.08 2.94 6.98 -2.39 -0.02 2.92 16
41 H 0.11 3.52 8.06 -2.38 -0.02 3.50 16
42 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16
43 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16
44 H 0.15 5.80 5.93 -2.91 -0.02 5.78 16
45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
46 H 0.11 1.53 6.80 -2.39 -0.02 1.51 16
47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
48 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16
49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -67.61 382.56 1.84 -65.77
By element:
Atomic # 1 Polarization: 28.52 SS G_CDS: 0.96 Total: 29.48 kcal
Atomic # 6 Polarization: -0.24 SS G_CDS: 6.58 Total: 6.33 kcal
Atomic # 7 Polarization: -92.44 SS G_CDS: -6.12 Total: -98.56 kcal
Atomic # 8 Polarization: -45.10 SS G_CDS: -1.60 Total: -46.70 kcal
Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal
Total: -67.61 1.84 -65.77 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299278734.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.645 kcal
(2) G-P(sol) polarization free energy of solvation -67.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds