Wall clock time and date at job start Wed Apr 1 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.54427 * 2 1 4 4 C 1.53103 * 109.50174 * 120.10882 * 2 1 3 5 5 N 1.47008 * 109.26125 * 63.08638 * 4 2 1 6 6 C 1.39193 * 111.00177 * 182.39338 * 5 4 2 7 7 C 1.39457 * 120.83031 * 359.97312 * 6 5 4 8 8 C 1.38217 * 119.28689 * 180.02562 * 7 6 5 9 9 N 1.31662 * 120.99766 * 359.72034 * 8 7 6 10 10 C 1.32893 * 121.81471 * 0.57078 * 9 8 7 11 11 C 1.48026 * 119.69266 * 179.70850 * 10 9 8 12 12 O 1.21569 * 119.99578 * 172.21237 * 11 10 9 13 13 N 1.34772 * 120.00175 * 352.20935 * 11 10 9 14 14 C 1.36792 * 119.99762 * 184.98493 * 13 11 10 15 15 H 1.07997 * 119.99966 * 222.11471 * 14 13 11 16 16 C 1.39105 * 120.00127 * 41.84182 * 14 13 11 17 17 N 1.31329 * 120.00164 * 16.97543 * 16 14 13 18 18 Si 1.86795 * 120.00114 * 196.97577 * 16 14 13 19 19 H 1.48494 * 109.47327 * 59.99672 * 18 16 14 20 20 H 1.48506 * 109.47218 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47087 * 299.99701 * 18 16 14 22 22 C 1.46500 * 120.00276 * 4.98336 * 13 11 10 23 23 C 1.52998 * 117.49755 * 181.07840 * 22 13 11 24 24 C 1.52992 * 117.49810 * 112.45543 * 22 13 11 25 25 C 1.39131 * 120.60584 * 359.43069 * 10 9 8 26 26 C 1.47012 * 110.75451 * 58.61376 * 5 4 2 27 27 C 1.53104 * 109.25927 * 301.38355 * 26 5 4 28 28 H 1.08995 * 109.54404 * 296.89651 * 27 26 5 29 29 C 1.52999 * 109.50733 * 176.78250 * 27 26 5 30 30 O 1.43017 * 109.50895 * 239.88586 * 2 1 3 31 31 H 1.08995 * 109.47240 * 299.89686 * 1 2 3 32 32 H 1.09006 * 109.46508 * 59.89484 * 1 2 3 33 33 H 1.08998 * 109.47210 * 179.89165 * 1 2 3 34 34 H 1.09003 * 109.50621 * 303.14498 * 4 2 1 35 35 H 1.08999 * 109.50345 * 183.01928 * 4 2 1 36 36 H 1.08002 * 120.35278 * 0.02562 * 7 6 5 37 37 H 1.07994 * 119.50083 * 180.02562 * 8 7 6 38 38 H 0.96993 * 120.00111 * 184.96575 * 17 16 14 39 39 H 1.08997 * 115.54741 * 326.78728 * 22 13 11 40 40 H 1.08996 * 117.50424 * 359.97438 * 23 22 13 41 41 H 1.09005 * 117.49430 * 145.02028 * 23 22 13 42 42 H 1.08997 * 117.50020 * 214.98316 * 24 22 13 43 43 H 1.09009 * 117.49948 * 359.97438 * 24 22 13 44 44 H 1.07998 * 120.52549 * 180.24857 * 25 10 9 45 45 H 1.08998 * 109.50684 * 61.32238 * 26 5 4 46 46 H 1.09002 * 109.51046 * 181.45127 * 26 5 4 47 47 H 1.09004 * 109.46777 * 300.21874 * 29 27 26 48 48 H 1.08994 * 109.47014 * 60.21822 * 29 27 26 49 49 H 1.09004 * 109.46992 * 180.21930 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7240 1.2485 5 7 1.6109 -2.1290 1.2046 6 6 2.0112 -2.8094 2.3510 7 6 2.7248 -2.1576 3.3564 8 6 3.1068 -2.8642 4.4812 9 7 2.8023 -4.1378 4.6177 10 6 2.1289 -4.8012 3.6836 11 6 1.8172 -6.2345 3.8830 12 8 1.0831 -6.8109 3.1040 13 7 2.3472 -6.9003 4.9280 14 6 2.1425 -8.2468 5.0558 15 1 1.9174 -8.6693 6.0239 16 6 2.2188 -9.0712 3.9380 17 7 2.8016 -8.6403 2.8428 18 14 1.4921 -10.7911 3.9945 19 1 0.0370 -10.7046 4.2779 20 1 1.7021 -11.4604 2.6855 21 1 2.1591 -11.5754 5.0647 22 6 3.1425 -6.1822 5.9270 23 6 3.7379 -6.9987 7.0758 24 6 2.5604 -6.0571 7.3363 25 6 1.7092 -4.1595 2.5227 26 6 2.1184 -2.7917 -0.0056 27 6 1.6065 -2.0471 -1.2415 28 1 0.5188 -2.1064 -1.2784 29 6 2.1960 -2.6833 -2.5019 30 8 2.0076 -0.6764 -1.1661 31 1 -0.3633 0.5122 0.8909 32 1 -0.3632 0.5155 -0.8891 33 1 -0.3633 -1.0276 -0.0019 34 1 1.6331 -0.2459 2.1391 35 1 3.1298 -0.6774 1.2761 36 1 2.9763 -1.1120 3.2571 37 1 3.6592 -2.3628 5.2620 38 1 2.7918 -9.1862 2.0412 39 1 3.7279 -5.3445 5.5481 40 1 3.5377 -8.0700 7.0886 41 1 4.7156 -6.6982 7.4528 42 1 2.7633 -5.1373 7.8848 43 1 1.5855 -6.5088 7.5202 44 1 1.1585 -4.6988 1.7662 45 1 3.2083 -2.7782 0.0020 46 1 1.7667 -3.8231 -0.0305 47 1 3.2838 -2.6249 -2.4636 48 1 1.8900 -3.7279 -2.5588 49 1 1.8342 -2.1503 -3.3812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333750898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:32 Heat of formation + Delta-G solvation = 29.055311 kcal Electronic energy + Delta-G solvation = -31343.848341 eV Core-core repulsion = 27273.572972 eV Total energy + Delta-G solvation = -4070.275369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.93128 -39.56330 -38.06666 -36.15087 -35.90729 -33.71101 -32.87205 -31.50807 -31.07228 -30.52529 -29.67260 -27.37409 -25.51558 -25.43347 -23.61141 -22.46765 -22.17872 -21.50206 -20.80798 -19.90776 -19.52595 -17.71312 -16.92403 -16.68133 -16.03270 -15.76334 -15.49032 -15.40842 -15.19486 -14.77920 -14.61663 -14.43652 -14.00946 -13.76131 -13.54357 -13.45399 -13.31143 -12.82082 -12.67697 -12.58410 -12.38433 -12.19223 -12.08985 -11.87286 -11.72699 -11.33431 -11.31336 -11.12341 -10.89036 -10.82146 -10.60650 -10.57997 -10.41597 -10.22693 -9.82904 -9.80524 -9.60522 -8.82172 -8.66559 -8.64691 -8.16847 -8.02311 -7.05337 -6.16236 -3.89120 1.27059 1.57553 3.29745 3.36048 3.36234 3.40166 3.51064 3.81262 4.24680 4.46765 4.52313 4.61379 4.67998 4.74323 4.78000 4.91507 4.95109 4.99563 5.10066 5.11000 5.17085 5.18461 5.31264 5.38424 5.40657 5.44196 5.52494 5.56613 5.66872 5.69663 5.74865 5.82932 5.92344 5.96346 6.00545 6.02886 6.08373 6.12538 6.25207 6.33924 6.41332 6.61392 6.73351 6.81838 6.96961 7.02315 7.14103 7.36113 7.55213 8.18324 8.35706 8.98526 9.14151 9.59148 10.25568 10.89048 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.003273 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.928748 B = 8551.787089 C =10054.460612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.108 0.892 4 C 0.019 3.981 5 N -0.481 5.481 6 C 0.142 3.858 7 C -0.232 4.232 8 C 0.112 3.888 9 N -0.475 5.475 10 C 0.142 3.858 11 C 0.513 3.487 12 O -0.536 6.536 13 N -0.397 5.397 14 C -0.333 4.333 15 H 0.083 0.917 16 C 0.067 3.933 17 N -0.823 5.823 18 Si 0.913 3.087 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.079 3.921 23 C -0.191 4.191 24 C -0.200 4.200 25 C -0.145 4.145 26 C 0.025 3.975 27 C 0.087 3.913 28 H 0.073 0.927 29 C -0.145 4.145 30 O -0.377 6.377 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.268 0.732 39 H 0.151 0.849 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.143 0.857 45 H 0.054 0.946 46 H 0.099 0.901 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 17.369 -4.490 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.032 3.968 3 H 0.126 0.874 4 C -0.108 4.108 5 N -0.196 5.196 6 C 0.037 3.963 7 C -0.256 4.256 8 C -0.047 4.047 9 N -0.188 5.188 10 C 0.004 3.996 11 C 0.300 3.700 12 O -0.414 6.414 13 N -0.115 5.115 14 C -0.460 4.460 15 H 0.101 0.899 16 C -0.144 4.144 17 N -0.456 5.456 18 Si 0.740 3.260 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.026 4.026 23 C -0.229 4.229 24 C -0.239 4.239 25 C -0.169 4.169 26 C -0.100 4.100 27 C 0.029 3.971 28 H 0.091 0.909 29 C -0.203 4.203 30 O -0.296 6.296 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.148 0.852 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.168 0.832 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.160 0.840 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.332 16.601 -4.578 17.224 hybrid contribution 0.048 -0.337 -0.337 0.479 sum 0.380 16.264 -4.915 16.995 Atomic orbital electron populations 1.22314 0.95393 1.03686 1.02178 1.22282 0.94543 0.95928 0.84027 0.87421 1.22990 0.99508 0.88228 1.00065 1.59043 1.56607 1.02542 1.01449 1.19052 0.92931 0.92731 0.91616 1.22151 1.03920 1.01735 0.97809 1.22689 0.95914 0.90503 0.95547 1.68211 1.13049 1.08121 1.29468 1.21888 0.91916 0.96421 0.89388 1.17267 0.84335 0.82965 0.85396 1.90601 1.38432 1.67181 1.45212 1.42649 1.41788 1.06495 1.20521 1.19022 1.49952 0.80959 0.96101 0.89902 1.25239 0.94439 0.98931 0.95813 1.69816 1.35097 1.38823 1.01893 0.86254 0.80062 0.82446 0.77264 1.19863 1.21043 1.20148 1.22777 0.97676 0.97862 0.84313 1.23154 0.96231 0.98967 1.04554 1.23137 0.97879 1.00566 1.02338 1.21664 1.02563 0.92690 0.99961 1.23030 0.99066 0.99726 0.88222 1.22209 0.99306 0.81444 0.94171 0.90919 1.21757 1.01923 1.00675 0.95930 1.88045 1.75562 1.23269 1.42738 0.91572 0.92190 0.90920 0.88829 0.92600 0.85214 0.83038 0.92209 0.83233 0.88154 0.90016 0.89981 0.89844 0.83975 0.92723 0.88317 0.91746 0.90495 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.89 37.16 0.33 -1.26 16 2 C 0.09 0.84 3.92 -26.68 -0.10 0.74 16 3 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.02 0.20 3.76 -3.71 -0.01 0.18 16 5 N -0.48 -6.27 4.14 -170.63 -0.71 -6.98 16 6 C 0.14 2.20 5.65 -83.63 -0.47 1.73 16 7 C -0.23 -3.18 8.89 -39.14 -0.35 -3.52 16 8 C 0.11 1.67 11.17 -17.63 -0.20 1.47 16 9 N -0.47 -9.05 5.97 -9.91 -0.06 -9.11 16 10 C 0.14 3.12 6.67 -83.06 -0.55 2.56 16 11 C 0.51 13.75 6.80 -12.25 -0.08 13.66 16 12 O -0.54 -16.02 14.11 5.30 0.07 -15.94 16 13 N -0.40 -10.45 2.85 -108.74 -0.31 -10.76 16 14 C -0.33 -9.25 8.08 -15.02 -0.12 -9.37 16 15 H 0.08 2.21 7.04 -52.49 -0.37 1.84 16 16 C 0.07 1.88 4.43 -17.44 -0.08 1.81 16 17 N -0.82 -24.27 11.57 55.50 0.64 -23.63 16 18 Si 0.91 21.76 29.59 -169.99 -5.03 16.73 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.08 1.73 5.20 -67.94 -0.35 1.38 16 23 C -0.19 -3.71 9.79 -26.73 -0.26 -3.98 16 24 C -0.20 -3.79 10.38 -26.74 -0.28 -4.07 16 25 C -0.15 -2.82 8.81 -38.82 -0.34 -3.17 16 26 C 0.03 0.32 4.70 -3.71 -0.02 0.30 16 27 C 0.09 0.94 3.03 -26.68 -0.08 0.86 16 28 H 0.07 0.78 6.49 -51.93 -0.34 0.44 16 29 C -0.15 -1.34 9.57 37.16 0.36 -0.99 16 30 O -0.38 -4.24 10.28 -35.23 -0.36 -4.60 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.77 6.12 -51.93 -0.32 0.45 16 34 H 0.09 0.85 7.27 -51.93 -0.38 0.48 16 35 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.13 1.36 5.96 -52.49 -0.31 1.05 16 37 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.15 3.16 5.18 -53.50 -0.28 2.88 16 40 H 0.10 2.10 6.62 -51.93 -0.34 1.76 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.14 2.90 6.89 -52.49 -0.36 2.54 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 1.34 6.93 -51.93 -0.36 0.98 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -33.13 383.40 -9.82 -42.96 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.24 Total: 7.20 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.62 Total: -1.66 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.43 Total: -50.47 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.29 Total: -20.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.13 -9.82 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333750898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.015 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds