Wall clock time and date at job start Wed Apr 1 2020 03:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.54427 * 2 1 4 4 C 1.53103 * 109.50174 * 120.10882 * 2 1 3 5 5 N 1.47008 * 109.26125 * 63.08638 * 4 2 1 6 6 C 1.39193 * 111.00177 * 182.39338 * 5 4 2 7 7 C 1.39457 * 120.83031 * 359.97312 * 6 5 4 8 8 C 1.38217 * 119.28689 * 180.02562 * 7 6 5 9 9 N 1.31662 * 120.99766 * 359.72034 * 8 7 6 10 10 C 1.32893 * 121.81471 * 0.57078 * 9 8 7 11 11 C 1.48026 * 119.69266 * 179.70850 * 10 9 8 12 12 O 1.21569 * 119.99578 * 172.21237 * 11 10 9 13 13 N 1.34772 * 120.00175 * 352.20935 * 11 10 9 14 14 C 1.36792 * 119.99762 * 184.98493 * 13 11 10 15 15 H 1.07997 * 119.99966 * 222.11471 * 14 13 11 16 16 C 1.39105 * 120.00127 * 41.84182 * 14 13 11 17 17 N 1.31329 * 120.00164 * 16.97543 * 16 14 13 18 18 Si 1.86795 * 120.00114 * 196.97577 * 16 14 13 19 19 H 1.48494 * 109.47327 * 59.99672 * 18 16 14 20 20 H 1.48506 * 109.47218 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47087 * 299.99701 * 18 16 14 22 22 C 1.46500 * 120.00276 * 4.98336 * 13 11 10 23 23 C 1.52998 * 117.49755 * 181.07840 * 22 13 11 24 24 C 1.52992 * 117.49810 * 112.45543 * 22 13 11 25 25 C 1.39131 * 120.60584 * 359.43069 * 10 9 8 26 26 C 1.47012 * 110.75451 * 58.61376 * 5 4 2 27 27 C 1.53104 * 109.25927 * 301.38355 * 26 5 4 28 28 H 1.08995 * 109.54404 * 296.89651 * 27 26 5 29 29 C 1.52999 * 109.50733 * 176.78250 * 27 26 5 30 30 O 1.43017 * 109.50895 * 239.88586 * 2 1 3 31 31 H 1.08995 * 109.47240 * 299.89686 * 1 2 3 32 32 H 1.09006 * 109.46508 * 59.89484 * 1 2 3 33 33 H 1.08998 * 109.47210 * 179.89165 * 1 2 3 34 34 H 1.09003 * 109.50621 * 303.14498 * 4 2 1 35 35 H 1.08999 * 109.50345 * 183.01928 * 4 2 1 36 36 H 1.08002 * 120.35278 * 0.02562 * 7 6 5 37 37 H 1.07994 * 119.50083 * 180.02562 * 8 7 6 38 38 H 0.96993 * 120.00111 * 184.96575 * 17 16 14 39 39 H 1.08997 * 115.54741 * 326.78728 * 22 13 11 40 40 H 1.08996 * 117.50424 * 359.97438 * 23 22 13 41 41 H 1.09005 * 117.49430 * 145.02028 * 23 22 13 42 42 H 1.08997 * 117.50020 * 214.98316 * 24 22 13 43 43 H 1.09009 * 117.49948 * 359.97438 * 24 22 13 44 44 H 1.07998 * 120.52549 * 180.24857 * 25 10 9 45 45 H 1.08998 * 109.50684 * 61.32238 * 26 5 4 46 46 H 1.09002 * 109.51046 * 181.45127 * 26 5 4 47 47 H 1.09004 * 109.46777 * 300.21874 * 29 27 26 48 48 H 1.08994 * 109.47014 * 60.21822 * 29 27 26 49 49 H 1.09004 * 109.46992 * 180.21930 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7240 1.2485 5 7 1.6109 -2.1290 1.2046 6 6 2.0112 -2.8094 2.3510 7 6 2.7248 -2.1576 3.3564 8 6 3.1068 -2.8642 4.4812 9 7 2.8023 -4.1378 4.6177 10 6 2.1289 -4.8012 3.6836 11 6 1.8172 -6.2345 3.8830 12 8 1.0831 -6.8109 3.1040 13 7 2.3472 -6.9003 4.9280 14 6 2.1425 -8.2468 5.0558 15 1 1.9174 -8.6693 6.0239 16 6 2.2188 -9.0712 3.9380 17 7 2.8016 -8.6403 2.8428 18 14 1.4921 -10.7911 3.9945 19 1 0.0370 -10.7046 4.2779 20 1 1.7021 -11.4604 2.6855 21 1 2.1591 -11.5754 5.0647 22 6 3.1425 -6.1822 5.9270 23 6 3.7379 -6.9987 7.0758 24 6 2.5604 -6.0571 7.3363 25 6 1.7092 -4.1595 2.5227 26 6 2.1184 -2.7917 -0.0056 27 6 1.6065 -2.0471 -1.2415 28 1 0.5188 -2.1064 -1.2784 29 6 2.1960 -2.6833 -2.5019 30 8 2.0076 -0.6764 -1.1661 31 1 -0.3633 0.5122 0.8909 32 1 -0.3632 0.5155 -0.8891 33 1 -0.3633 -1.0276 -0.0019 34 1 1.6331 -0.2459 2.1391 35 1 3.1298 -0.6774 1.2761 36 1 2.9763 -1.1120 3.2571 37 1 3.6592 -2.3628 5.2620 38 1 2.7918 -9.1862 2.0412 39 1 3.7279 -5.3445 5.5481 40 1 3.5377 -8.0700 7.0886 41 1 4.7156 -6.6982 7.4528 42 1 2.7633 -5.1373 7.8848 43 1 1.5855 -6.5088 7.5202 44 1 1.1585 -4.6988 1.7662 45 1 3.2083 -2.7782 0.0020 46 1 1.7667 -3.8231 -0.0305 47 1 3.2838 -2.6249 -2.4636 48 1 1.8900 -3.7279 -2.5588 49 1 1.8342 -2.1503 -3.3812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333750898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:31 Heat of formation + Delta-G solvation = 7.671070 kcal Electronic energy + Delta-G solvation = -31344.775631 eV Core-core repulsion = 27273.572972 eV Total energy + Delta-G solvation = -4071.202659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.06636 -40.89109 -39.66953 -37.73152 -37.25594 -34.86127 -34.52119 -33.06259 -32.40940 -32.07973 -30.65301 -28.35677 -27.30887 -26.51790 -24.95756 -23.67541 -23.38050 -23.02553 -22.43876 -21.45931 -20.55884 -19.19508 -18.16883 -17.80370 -17.75668 -17.18204 -16.64975 -16.51423 -16.44124 -16.28224 -15.92062 -15.64426 -15.58835 -15.28753 -14.98157 -14.79342 -14.57114 -14.27290 -14.01826 -13.70046 -13.41104 -13.35581 -13.16632 -12.97736 -12.86125 -12.81303 -12.77918 -12.64619 -12.30403 -12.20641 -12.15376 -12.10728 -11.61607 -11.57702 -11.37760 -11.28737 -10.80035 -10.55026 -10.43184 -10.07312 -9.76852 -9.31293 -9.03355 -8.24367 -6.03861 -0.13897 0.27527 1.35401 1.43531 1.48105 2.16386 2.27044 2.43868 2.70395 2.95131 3.06089 3.14340 3.44145 3.56189 3.57658 3.68099 3.80164 3.93416 3.96973 4.01760 4.09894 4.21102 4.25006 4.33235 4.35189 4.39102 4.46804 4.52712 4.57529 4.59496 4.61960 4.71078 4.71567 4.90941 4.92149 4.93054 4.95093 4.96959 5.07023 5.10993 5.20128 5.35933 5.38211 5.40887 5.50407 5.66862 5.75935 6.01582 6.13133 6.15943 6.90015 6.95480 7.19364 7.60167 8.26656 8.80413 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.003273 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.928748 B = 8551.787089 C =10054.460612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 H 0.138 0.862 4 C 0.015 3.985 5 N -0.486 5.486 6 C 0.149 3.851 7 C -0.207 4.207 8 C 0.116 3.884 9 N -0.486 5.486 10 C 0.111 3.889 11 C 0.500 3.500 12 O -0.588 6.588 13 N -0.415 5.415 14 C -0.354 4.354 15 H 0.084 0.916 16 C 0.017 3.983 17 N -0.864 5.864 18 Si 0.974 3.026 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.254 1.254 22 C 0.050 3.950 23 C -0.183 4.183 24 C -0.177 4.177 25 C -0.160 4.160 26 C 0.028 3.972 27 C 0.093 3.907 28 H 0.071 0.929 29 C -0.144 4.144 30 O -0.386 6.386 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.178 0.822 37 H 0.202 0.798 38 H 0.262 0.738 39 H 0.161 0.839 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.050 0.950 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 21.198 -3.253 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 H 0.155 0.845 4 C -0.111 4.111 5 N -0.201 5.201 6 C 0.043 3.957 7 C -0.230 4.230 8 C -0.043 4.043 9 N -0.200 5.200 10 C -0.026 4.026 11 C 0.289 3.711 12 O -0.470 6.470 13 N -0.131 5.131 14 C -0.482 4.482 15 H 0.101 0.899 16 C -0.189 4.189 17 N -0.499 5.499 18 Si 0.798 3.202 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.178 1.178 22 C -0.055 4.055 23 C -0.221 4.221 24 C -0.215 4.215 25 C -0.185 4.185 26 C -0.098 4.098 27 C 0.035 3.965 28 H 0.089 0.911 29 C -0.201 4.201 30 O -0.305 6.305 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.195 0.805 37 H 0.218 0.782 38 H 0.072 0.928 39 H 0.177 0.823 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.084 0.916 44 H 0.132 0.868 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.550 20.443 -3.306 20.767 hybrid contribution -0.340 -1.229 -0.716 1.463 sum 1.210 19.214 -4.022 19.667 Atomic orbital electron populations 1.22286 0.95279 1.02499 1.03201 1.22532 0.94689 0.96901 0.82902 0.84500 1.23217 1.00216 0.86041 1.01612 1.58975 1.56572 1.04025 1.00550 1.19143 0.92212 0.91187 0.93166 1.22651 1.00760 1.03591 0.95951 1.23513 0.94943 0.88932 0.96950 1.68033 1.13018 1.10201 1.28779 1.21182 0.95386 0.94441 0.91543 1.18093 0.83338 0.85079 0.84637 1.90526 1.40503 1.69189 1.46830 1.42867 1.42445 1.06330 1.21498 1.19270 1.50420 0.82268 0.96217 0.89856 1.26125 0.94640 1.02679 0.95494 1.69932 1.37258 1.40301 1.02437 0.85322 0.78764 0.78325 0.77808 1.20576 1.20878 1.17769 1.23013 0.99089 0.98881 0.84495 1.23205 0.98117 0.97805 1.02976 1.23131 0.96816 1.01598 0.99975 1.21484 1.03349 0.94715 0.98906 1.22981 0.98617 0.99084 0.89098 1.22150 0.99164 0.81527 0.93686 0.91118 1.21763 1.01788 1.00855 0.95707 1.88042 1.75783 1.22978 1.43714 0.90251 0.91533 0.93161 0.86741 0.91699 0.80512 0.78152 0.92834 0.82276 0.90328 0.86633 0.86290 0.91643 0.86818 0.93200 0.90572 0.91846 0.90405 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.89 71.98 0.64 -2.04 16 2 C 0.09 1.33 3.92 30.63 0.12 1.45 16 3 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.02 0.25 3.76 86.32 0.32 0.58 16 5 N -0.49 -11.98 4.14 -693.75 -2.87 -14.85 16 6 C 0.15 4.44 5.65 38.55 0.22 4.65 16 7 C -0.21 -4.77 8.89 22.56 0.20 -4.57 16 8 C 0.12 2.97 11.17 84.71 0.95 3.91 16 9 N -0.49 -17.97 5.97 -185.25 -1.11 -19.07 16 10 C 0.11 5.05 6.67 41.80 0.28 5.33 16 11 C 0.50 28.47 6.80 86.84 0.59 29.06 16 12 O -0.59 -38.04 14.11 -3.93 -0.06 -38.10 16 13 N -0.41 -22.79 2.85 -616.22 -1.75 -24.55 16 14 C -0.35 -20.64 8.08 84.13 0.68 -19.96 16 15 H 0.08 4.66 7.04 -2.91 -0.02 4.63 16 16 C 0.02 1.02 4.43 84.98 0.38 1.39 16 17 N -0.86 -54.18 11.57 21.69 0.25 -53.93 16 18 Si 0.97 46.72 29.59 68.60 2.03 48.75 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 22 C 0.05 2.17 5.20 44.99 0.23 2.41 16 23 C -0.18 -6.94 9.79 30.59 0.30 -6.65 16 24 C -0.18 -6.43 10.38 30.59 0.32 -6.11 16 25 C -0.16 -6.52 8.81 22.77 0.20 -6.32 16 26 C 0.03 0.71 4.70 86.32 0.41 1.12 16 27 C 0.09 1.95 3.03 30.63 0.09 2.04 16 28 H 0.07 1.52 6.49 -2.39 -0.02 1.50 16 29 C -0.14 -2.59 9.57 71.98 0.69 -1.90 16 30 O -0.39 -7.79 10.28 -148.98 -1.53 -9.32 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.05 1.00 6.12 -2.39 -0.01 0.99 16 34 H 0.11 1.45 7.27 -2.39 -0.02 1.44 16 35 H 0.06 1.01 7.57 -2.39 -0.02 1.00 16 36 H 0.18 2.48 5.96 -2.91 -0.02 2.46 16 37 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.16 6.60 5.18 -5.49 -0.03 6.57 16 40 H 0.08 3.32 6.62 -2.39 -0.02 3.31 16 41 H 0.12 3.55 8.14 -2.38 -0.02 3.53 16 42 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 44 H 0.11 5.16 6.89 -2.91 -0.02 5.14 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 2.26 6.93 -2.39 -0.02 2.24 16 47 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -79.90 383.40 2.52 -77.38 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.95 Total: 29.31 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.61 Total: 4.39 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -5.48 Total: -112.40 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -1.59 Total: -47.42 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.90 2.52 -77.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333750898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.048 kcal (2) G-P(sol) polarization free energy of solvation -79.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds