Wall clock time and date at job start Wed Apr 1 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.78501 * 2 1 4 4 C 1.53241 * 109.63223 * 239.51167 * 2 1 3 5 5 N 1.46894 * 109.34046 * 186.45692 * 4 2 1 6 6 C 1.46903 * 111.26847 * 63.10495 * 5 4 2 7 7 C 1.53237 * 109.34226 * 296.89541 * 6 5 4 8 8 N 1.47080 * 108.51895 * 53.82792 * 7 6 5 9 9 C 1.34782 * 120.88253 * 128.84251 * 8 7 6 10 10 O 1.21350 * 120.00296 * 177.03180 * 9 8 7 11 11 C 1.49452 * 119.99545 * 357.02272 * 9 8 7 12 12 O 1.21349 * 120.00294 * 6.47998 * 11 9 8 13 13 N 1.34781 * 119.99507 * 186.47402 * 11 9 8 14 14 C 1.46498 * 119.99769 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.46804 * 35.00127 * 14 13 11 16 16 C 1.52996 * 109.47082 * 155.00593 * 14 13 11 17 17 C 1.50705 * 109.46901 * 294.99979 * 16 14 13 18 18 H 1.08000 * 119.99979 * 0.02562 * 17 16 14 19 19 C 1.37875 * 119.99734 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00352 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47148 * 89.99232 * 21 19 17 23 23 H 1.48500 * 109.47348 * 209.99829 * 21 19 17 24 24 H 1.48506 * 109.46757 * 329.99577 * 21 19 17 25 25 C 1.50703 * 109.47325 * 275.00535 * 14 13 11 26 26 C 1.38233 * 119.99972 * 319.72695 * 25 14 13 27 27 C 1.38235 * 120.00271 * 179.76892 * 26 25 14 28 28 C 1.38231 * 119.99684 * 0.47846 * 27 26 25 29 29 C 1.38240 * 119.99925 * 359.79667 * 28 27 26 30 30 C 1.38228 * 120.00020 * 359.95063 * 29 28 27 31 31 H 1.09000 * 109.47538 * 187.98666 * 1 2 3 32 32 H 1.08995 * 109.47877 * 307.99042 * 1 2 3 33 33 H 1.09006 * 109.47118 * 67.99063 * 1 2 3 34 34 H 1.09002 * 109.48786 * 66.49781 * 4 2 1 35 35 H 1.08996 * 109.49180 * 306.42545 * 4 2 1 36 36 H 1.00900 * 111.00253 * 187.25316 * 5 4 2 37 37 H 1.09002 * 109.48948 * 56.85394 * 6 5 4 38 38 H 1.09002 * 109.49743 * 176.90422 * 6 5 4 39 39 H 1.09002 * 109.63120 * 173.53684 * 7 6 5 40 40 H 1.09003 * 109.62856 * 293.92364 * 7 6 5 41 41 H 0.96998 * 120.00067 * 0.02562 * 13 11 9 42 42 H 1.08998 * 109.47185 * 54.99779 * 16 14 13 43 43 H 1.09003 * 109.47045 * 175.00446 * 16 14 13 44 44 H 0.97006 * 119.99909 * 180.02562 * 20 19 17 45 45 H 1.08006 * 120.00061 * 359.97438 * 26 25 14 46 46 H 1.07996 * 120.00114 * 180.25328 * 27 26 25 47 47 H 1.07999 * 119.99926 * 179.77011 * 28 27 26 48 48 H 1.08000 * 119.99871 * 179.97438 * 29 28 27 49 49 H 1.08000 * 119.99842 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7323 -1.2438 5 7 3.5054 -0.8643 -1.1608 6 6 3.9016 -1.6869 -0.0100 7 6 3.4629 -0.9938 1.2844 8 7 2.0240 -0.7027 1.1939 9 6 1.1806 -1.0697 2.1791 10 8 0.0055 -0.7742 2.1133 11 6 1.6928 -1.8408 3.3524 12 8 2.8841 -2.0350 3.4778 13 7 0.8314 -2.3204 4.2715 14 6 1.3334 -3.0757 5.4220 15 1 2.2948 -2.6670 5.7334 16 6 0.3356 -2.9690 6.5768 17 6 0.2576 -1.5379 7.0427 18 1 0.8593 -0.7802 6.5628 19 6 -0.5818 -1.1959 8.0816 20 7 -1.3149 -2.1184 8.6657 21 14 -0.6790 0.5781 8.6587 22 1 -1.7376 1.2889 7.8976 23 1 -1.0043 0.6104 10.1072 24 1 0.6279 1.2453 8.4298 25 6 1.5037 -4.5228 5.0373 26 6 0.5593 -5.1418 4.2399 27 6 0.7178 -6.4678 3.8831 28 6 1.8158 -7.1777 4.3319 29 6 2.7573 -6.5603 5.1340 30 6 2.6014 -5.2329 5.4864 31 1 -0.3634 -1.0177 0.1428 32 1 -0.3635 0.6325 0.8098 33 1 -0.3634 0.3851 -0.9528 34 1 1.7810 -0.1639 -2.1357 35 1 1.5924 -1.7225 -1.2961 36 1 3.8842 -1.2365 -2.0187 37 1 3.4234 -2.6640 -0.0795 38 1 4.9845 -1.8114 -0.0073 39 1 3.6508 -1.6510 2.1335 40 1 4.0201 -0.0654 1.4096 41 1 -0.1208 -2.1654 4.1711 42 1 -0.6479 -3.2950 6.2385 43 1 0.6646 -3.6019 7.4010 44 1 -1.9057 -1.8777 9.3964 45 1 -0.3009 -4.5883 3.8929 46 1 -0.0179 -6.9502 3.2568 47 1 1.9378 -8.2148 4.0562 48 1 3.6149 -7.1151 5.4849 49 1 3.3372 -4.7505 6.1128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419468306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:40 Heat of formation + Delta-G solvation = -10.774720 kcal Electronic energy + Delta-G solvation = -31298.292598 eV Core-core repulsion = 27226.290070 eV Total energy + Delta-G solvation = -4072.002528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96353 -39.42728 -38.37855 -37.60564 -35.55474 -33.81327 -32.82745 -32.65643 -31.22379 -30.53473 -28.92746 -28.22130 -25.85224 -25.35028 -23.99770 -22.56721 -22.32560 -22.01145 -21.10075 -19.94068 -19.44229 -17.49830 -16.89905 -16.74300 -16.22602 -16.03644 -15.86103 -15.42843 -15.20849 -15.03236 -14.87393 -14.58847 -14.42267 -14.10103 -13.99897 -13.46629 -13.13171 -13.02518 -12.71242 -12.62427 -12.59296 -12.50510 -12.14989 -12.01575 -11.76170 -11.55915 -11.41549 -11.18962 -11.15217 -10.99648 -10.76826 -10.64929 -10.51380 -10.15267 -9.84929 -9.35855 -9.06696 -8.72677 -8.66998 -8.58907 -8.49277 -8.45326 -8.26412 -6.10554 -4.14522 1.66645 1.70595 1.72970 2.52484 3.28858 3.35561 3.39296 3.47404 3.69086 3.95337 4.14596 4.39722 4.59827 4.75783 4.79428 4.99388 5.07285 5.16712 5.18804 5.20175 5.26724 5.28126 5.30785 5.45307 5.45610 5.49380 5.68969 5.79279 5.82369 5.85494 6.00657 6.04063 6.08783 6.19245 6.25834 6.34345 6.46721 6.48977 6.65221 6.76982 6.78270 6.83428 6.99353 7.00523 7.22481 7.32159 7.43389 7.48903 7.69458 7.85041 8.05412 8.20942 8.39536 8.90504 9.51228 10.99860 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.004216 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.328178 B = 6639.667330 C = 9046.633640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.143 3.857 3 H 0.080 0.920 4 C 0.048 3.952 5 N -0.692 5.692 6 C 0.044 3.956 7 C 0.054 3.946 8 N -0.583 5.583 9 C 0.508 3.492 10 O -0.513 6.513 11 C 0.505 3.495 12 O -0.524 6.524 13 N -0.660 5.660 14 C 0.181 3.819 15 H 0.093 0.907 16 C 0.023 3.977 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.075 4.075 26 C -0.108 4.108 27 C -0.124 4.124 28 C -0.133 4.133 29 C -0.122 4.122 30 C -0.106 4.106 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.342 0.658 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.165 0.835 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.027 0.973 43 H 0.039 0.961 44 H 0.262 0.738 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.825 -3.637 -17.770 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.040 3.960 3 H 0.098 0.902 4 C -0.082 4.082 5 N -0.323 5.323 6 C -0.085 4.085 7 C -0.067 4.067 8 N -0.317 5.317 9 C 0.291 3.709 10 O -0.389 6.389 11 C 0.286 3.714 12 O -0.404 6.404 13 N -0.309 5.309 14 C 0.078 3.922 15 H 0.111 0.889 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.076 4.076 26 C -0.126 4.126 27 C -0.142 4.142 28 C -0.151 4.151 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.160 0.840 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.180 0.820 40 H 0.088 0.912 41 H 0.251 0.749 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.947 -3.052 -17.194 19.186 hybrid contribution -0.749 0.192 -0.130 0.784 sum 7.198 -2.860 -17.324 18.976 Atomic orbital electron populations 1.22201 0.92226 1.04142 1.01342 1.21470 0.95579 0.95798 0.83134 0.90157 1.22393 0.88074 0.99561 0.98200 1.60331 1.10452 1.54876 1.06641 1.22362 1.00879 0.94317 0.90989 1.23439 0.78612 1.03515 1.01172 1.48044 1.08979 1.56231 1.18474 1.20275 0.86075 0.80707 0.83818 1.90802 1.16424 1.54334 1.77324 1.20129 0.86707 0.80418 0.84150 1.90228 1.15318 1.59738 1.75104 1.45888 1.11185 1.51430 1.22366 1.20460 1.01261 0.84802 0.85702 0.88888 1.19420 0.92984 0.98173 0.90795 1.21104 1.24678 0.93296 1.17108 0.92393 1.24963 0.95363 0.97333 0.96276 1.69952 1.26156 1.32871 1.23953 0.86590 0.78544 0.85032 0.77876 1.20550 1.21182 1.19829 1.20464 0.94073 0.96829 0.96239 1.20954 0.98718 0.94707 0.98266 1.21049 0.97973 0.94599 1.00592 1.21019 0.95290 0.99428 0.99333 1.21048 0.99174 0.94976 0.98844 1.21006 0.97348 0.94322 0.99733 0.91510 0.89929 0.93411 0.89626 0.94609 0.83974 0.94806 0.89525 0.81969 0.91181 0.74874 0.95501 0.94334 0.92801 0.86491 0.86669 0.86770 0.86492 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.63 37.15 0.28 -1.43 16 2 C 0.14 1.70 3.65 -67.49 -0.25 1.45 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.05 0.46 5.99 -3.70 -0.02 0.44 16 5 N -0.69 -6.47 6.82 -113.51 -0.77 -7.24 16 6 C 0.04 0.46 6.70 -3.70 -0.02 0.43 16 7 C 0.05 0.68 6.39 -3.60 -0.02 0.66 16 8 N -0.58 -8.12 3.01 -165.43 -0.50 -8.62 16 9 C 0.51 8.32 7.59 -11.58 -0.09 8.23 16 10 O -0.51 -9.01 12.13 5.50 0.07 -8.94 16 11 C 0.50 8.88 7.77 -11.58 -0.09 8.79 16 12 O -0.52 -9.49 12.69 5.50 0.07 -9.42 16 13 N -0.66 -12.13 4.03 -55.36 -0.22 -12.35 16 14 C 0.18 3.55 2.11 -69.08 -0.15 3.41 16 15 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 16 C 0.02 0.55 4.49 -27.88 -0.13 0.43 16 17 C -0.52 -13.82 8.84 -34.44 -0.30 -14.12 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.07 -1.32 4.91 -104.62 -0.51 -1.84 16 26 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 27 C -0.12 -1.78 10.05 -39.59 -0.40 -2.17 16 28 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 29 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 30 C -0.11 -1.71 9.67 -39.59 -0.38 -2.09 16 31 H 0.07 0.91 6.87 -51.93 -0.36 0.55 16 32 H 0.08 1.17 6.68 -51.93 -0.35 0.82 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.34 2.46 8.90 -39.29 -0.35 2.11 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.16 2.37 3.86 -56.69 -0.22 2.15 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.41 7.64 8.09 -40.82 -0.33 7.31 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 1.87 7.73 -52.48 -0.41 1.46 16 46 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 48 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.12 1.86 8.04 -52.49 -0.42 1.43 16 LS Contribution 394.59 15.07 5.95 5.95 Total: -1.00 -29.75 394.59 -10.47 -40.22 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -7.43 Total: 11.58 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.34 Total: -2.63 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.76 Total: -52.99 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.14 Total: -18.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.75 -10.47 -40.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419468306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.445 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds