Wall clock time and date at job start Wed Apr 1 2020 03:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.78501 * 2 1 4 4 C 1.53241 * 109.63223 * 239.51167 * 2 1 3 5 5 N 1.46894 * 109.34046 * 186.45692 * 4 2 1 6 6 C 1.46903 * 111.26847 * 63.10495 * 5 4 2 7 7 C 1.53237 * 109.34226 * 296.89541 * 6 5 4 8 8 N 1.47080 * 108.51895 * 53.82792 * 7 6 5 9 9 C 1.34782 * 120.88253 * 128.84251 * 8 7 6 10 10 O 1.21350 * 120.00296 * 177.03180 * 9 8 7 11 11 C 1.49452 * 119.99545 * 357.02272 * 9 8 7 12 12 O 1.21349 * 120.00294 * 6.47998 * 11 9 8 13 13 N 1.34781 * 119.99507 * 186.47402 * 11 9 8 14 14 C 1.46498 * 119.99769 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.46804 * 35.00127 * 14 13 11 16 16 C 1.52996 * 109.47082 * 155.00593 * 14 13 11 17 17 C 1.50705 * 109.46901 * 294.99979 * 16 14 13 18 18 H 1.08000 * 119.99979 * 0.02562 * 17 16 14 19 19 C 1.37875 * 119.99734 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00352 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47148 * 89.99232 * 21 19 17 23 23 H 1.48500 * 109.47348 * 209.99829 * 21 19 17 24 24 H 1.48506 * 109.46757 * 329.99577 * 21 19 17 25 25 C 1.50703 * 109.47325 * 275.00535 * 14 13 11 26 26 C 1.38233 * 119.99972 * 319.72695 * 25 14 13 27 27 C 1.38235 * 120.00271 * 179.76892 * 26 25 14 28 28 C 1.38231 * 119.99684 * 0.47846 * 27 26 25 29 29 C 1.38240 * 119.99925 * 359.79667 * 28 27 26 30 30 C 1.38228 * 120.00020 * 359.95063 * 29 28 27 31 31 H 1.09000 * 109.47538 * 187.98666 * 1 2 3 32 32 H 1.08995 * 109.47877 * 307.99042 * 1 2 3 33 33 H 1.09006 * 109.47118 * 67.99063 * 1 2 3 34 34 H 1.09002 * 109.48786 * 66.49781 * 4 2 1 35 35 H 1.08996 * 109.49180 * 306.42545 * 4 2 1 36 36 H 1.00900 * 111.00253 * 187.25316 * 5 4 2 37 37 H 1.09002 * 109.48948 * 56.85394 * 6 5 4 38 38 H 1.09002 * 109.49743 * 176.90422 * 6 5 4 39 39 H 1.09002 * 109.63120 * 173.53684 * 7 6 5 40 40 H 1.09003 * 109.62856 * 293.92364 * 7 6 5 41 41 H 0.96998 * 120.00067 * 0.02562 * 13 11 9 42 42 H 1.08998 * 109.47185 * 54.99779 * 16 14 13 43 43 H 1.09003 * 109.47045 * 175.00446 * 16 14 13 44 44 H 0.97006 * 119.99909 * 180.02562 * 20 19 17 45 45 H 1.08006 * 120.00061 * 359.97438 * 26 25 14 46 46 H 1.07996 * 120.00114 * 180.25328 * 27 26 25 47 47 H 1.07999 * 119.99926 * 179.77011 * 28 27 26 48 48 H 1.08000 * 119.99871 * 179.97438 * 29 28 27 49 49 H 1.08000 * 119.99842 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7323 -1.2438 5 7 3.5054 -0.8643 -1.1608 6 6 3.9016 -1.6869 -0.0100 7 6 3.4629 -0.9938 1.2844 8 7 2.0240 -0.7027 1.1939 9 6 1.1806 -1.0697 2.1791 10 8 0.0055 -0.7742 2.1133 11 6 1.6928 -1.8408 3.3524 12 8 2.8841 -2.0350 3.4778 13 7 0.8314 -2.3204 4.2715 14 6 1.3334 -3.0757 5.4220 15 1 2.2948 -2.6670 5.7334 16 6 0.3356 -2.9690 6.5768 17 6 0.2576 -1.5379 7.0427 18 1 0.8593 -0.7802 6.5628 19 6 -0.5818 -1.1959 8.0816 20 7 -1.3149 -2.1184 8.6657 21 14 -0.6790 0.5781 8.6587 22 1 -1.7376 1.2889 7.8976 23 1 -1.0043 0.6104 10.1072 24 1 0.6279 1.2453 8.4298 25 6 1.5037 -4.5228 5.0373 26 6 0.5593 -5.1418 4.2399 27 6 0.7178 -6.4678 3.8831 28 6 1.8158 -7.1777 4.3319 29 6 2.7573 -6.5603 5.1340 30 6 2.6014 -5.2329 5.4864 31 1 -0.3634 -1.0177 0.1428 32 1 -0.3635 0.6325 0.8098 33 1 -0.3634 0.3851 -0.9528 34 1 1.7810 -0.1639 -2.1357 35 1 1.5924 -1.7225 -1.2961 36 1 3.8842 -1.2365 -2.0187 37 1 3.4234 -2.6640 -0.0795 38 1 4.9845 -1.8114 -0.0073 39 1 3.6508 -1.6510 2.1335 40 1 4.0201 -0.0654 1.4096 41 1 -0.1208 -2.1654 4.1711 42 1 -0.6479 -3.2950 6.2385 43 1 0.6646 -3.6019 7.4010 44 1 -1.9057 -1.8777 9.3964 45 1 -0.3009 -4.5883 3.8929 46 1 -0.0179 -6.9502 3.2568 47 1 1.9378 -8.2148 4.0562 48 1 3.6149 -7.1151 5.4849 49 1 3.3372 -4.7505 6.1128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419468306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:39 Heat of formation + Delta-G solvation = -30.269218 kcal Electronic energy + Delta-G solvation = -31299.137943 eV Core-core repulsion = 27226.290070 eV Total energy + Delta-G solvation = -4072.847873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.22729 -40.69774 -39.60444 -38.73645 -37.04347 -35.00155 -34.59321 -33.70499 -32.63008 -31.71350 -30.59892 -29.25237 -27.20581 -26.62713 -25.35792 -23.83347 -23.59919 -23.28836 -22.22015 -21.35385 -20.66384 -18.85394 -18.51301 -18.01295 -17.63396 -17.25468 -17.03745 -16.67595 -16.49276 -16.30796 -16.14381 -15.92200 -15.59608 -15.26506 -15.14206 -14.79752 -14.50631 -14.20895 -14.19083 -14.00164 -13.73484 -13.67184 -13.52942 -13.46033 -13.02935 -12.96822 -12.64849 -12.60313 -12.48191 -12.33201 -12.18437 -12.08999 -11.89439 -11.65075 -11.40912 -11.32778 -10.62097 -10.22945 -10.03193 -9.89743 -9.77197 -9.54462 -9.41250 -8.22716 -6.32700 0.33545 0.47324 0.54631 1.28739 1.37910 1.39021 1.48993 2.11719 2.38070 2.43955 2.94341 3.11514 3.17898 3.31651 3.80131 3.89687 3.91968 4.00465 4.09228 4.17661 4.19465 4.26076 4.31198 4.37313 4.37692 4.59127 4.60573 4.70205 4.72003 4.74768 4.80053 4.84313 4.91273 5.10373 5.11012 5.15750 5.18651 5.28141 5.39389 5.47775 5.56737 5.59866 5.63486 5.74888 5.79966 5.89431 5.98947 6.12319 6.17349 6.27267 6.42517 6.73358 6.79373 6.97209 7.36330 8.87960 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.004216 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.328178 B = 6639.667330 C = 9046.633640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.137 3.863 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.691 5.691 6 C 0.052 3.948 7 C 0.051 3.949 8 N -0.576 5.576 9 C 0.506 3.494 10 O -0.532 6.532 11 C 0.503 3.497 12 O -0.531 6.531 13 N -0.664 5.664 14 C 0.198 3.802 15 H 0.076 0.924 16 C 0.036 3.964 17 C -0.532 4.532 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.270 1.270 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.120 4.120 30 C -0.124 4.124 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.030 0.970 36 H 0.359 0.641 37 H 0.026 0.974 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.412 0.588 42 H 0.008 0.992 43 H 0.014 0.986 44 H 0.264 0.736 45 H 0.111 0.889 46 H 0.142 0.858 47 H 0.152 0.848 48 H 0.148 0.852 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -4.105 -20.100 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.035 3.965 3 H 0.104 0.896 4 C -0.076 4.076 5 N -0.324 5.324 6 C -0.078 4.078 7 C -0.070 4.070 8 N -0.310 5.310 9 C 0.289 3.711 10 O -0.409 6.409 11 C 0.285 3.715 12 O -0.412 6.412 13 N -0.312 5.312 14 C 0.094 3.906 15 H 0.094 0.906 16 C -0.001 4.001 17 C -0.570 4.570 18 H 0.071 0.929 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.778 3.222 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.100 4.100 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.142 4.142 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.048 0.952 36 H 0.180 0.820 37 H 0.044 0.956 38 H 0.125 0.875 39 H 0.162 0.838 40 H 0.092 0.908 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.129 0.871 46 H 0.160 0.840 47 H 0.169 0.831 48 H 0.166 0.834 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.208 -3.515 -19.567 21.909 hybrid contribution -1.070 0.294 0.537 1.232 sum 8.139 -3.220 -19.030 20.946 Atomic orbital electron populations 1.22051 0.92496 1.02575 1.01977 1.21717 0.95461 0.96247 0.83118 0.89563 1.22360 0.88163 0.99340 0.97739 1.60284 1.10261 1.54704 1.07130 1.22268 1.01986 0.93530 0.90048 1.23397 0.77890 1.03502 1.02213 1.48189 1.09258 1.55239 1.18315 1.20046 0.86153 0.80990 0.83961 1.90807 1.17074 1.55339 1.77709 1.20453 0.86489 0.80200 0.84404 1.90258 1.15503 1.59912 1.75492 1.45817 1.11161 1.51866 1.22399 1.19978 0.98796 0.86811 0.85003 0.90570 1.19154 0.93098 0.96253 0.91582 1.21397 1.24207 0.94445 1.16979 0.92908 1.25736 0.95141 1.01170 0.96531 1.70058 1.26973 1.34751 1.24587 0.85630 0.78575 0.80392 0.77567 1.20100 1.20524 1.19438 1.20322 0.95808 0.95646 0.98264 1.21041 0.98480 0.96047 0.98765 1.21392 0.98941 0.93607 1.00411 1.21478 0.94080 1.00971 0.97784 1.21416 1.00226 0.93982 0.98155 1.21182 0.97138 0.95672 1.00241 0.93330 0.92412 0.90371 0.86850 0.95180 0.82047 0.95556 0.87481 0.83816 0.90792 0.75207 0.97322 0.96792 0.92664 0.87139 0.84045 0.83072 0.83427 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 7.63 71.98 0.55 -2.59 16 2 C 0.14 3.04 3.65 44.96 0.16 3.21 16 3 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 4 C 0.05 0.90 5.99 86.39 0.52 1.41 16 5 N -0.69 -10.91 6.82 -513.03 -3.50 -14.41 16 6 C 0.05 0.96 6.70 86.38 0.58 1.54 16 7 C 0.05 1.26 6.39 86.35 0.55 1.81 16 8 N -0.58 -15.91 3.01 -795.64 -2.39 -18.30 16 9 C 0.51 17.04 7.59 87.27 0.66 17.71 16 10 O -0.53 -19.37 12.13 -3.25 -0.04 -19.41 16 11 C 0.50 18.47 7.77 87.27 0.68 19.15 16 12 O -0.53 -19.97 12.69 -3.24 -0.04 -20.01 16 13 N -0.66 -25.90 4.03 -447.43 -1.80 -27.70 16 14 C 0.20 8.25 2.11 44.25 0.09 8.35 16 15 H 0.08 3.37 7.44 -2.39 -0.02 3.35 16 16 C 0.04 1.83 4.49 29.85 0.13 1.97 16 17 C -0.53 -29.25 8.84 25.60 0.23 -29.03 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 21 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 25 C -0.10 -3.64 4.91 -19.87 -0.10 -3.74 16 26 C -0.12 -4.18 9.32 22.27 0.21 -3.97 16 27 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 28 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 29 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 30 C -0.12 -4.04 9.67 22.27 0.22 -3.83 16 31 H 0.05 1.32 6.87 -2.39 -0.02 1.30 16 32 H 0.06 1.65 6.68 -2.39 -0.02 1.63 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.36 3.91 8.90 -89.69 -0.80 3.11 16 37 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.15 4.22 3.86 -77.73 -0.30 3.92 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.41 16.30 8.09 -92.71 -0.75 15.55 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.01 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 45 H 0.11 3.72 7.73 -2.91 -0.02 3.69 16 46 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 47 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 48 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 49 H 0.12 3.83 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -66.44 394.59 -0.72 -67.16 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.86 Total: 36.10 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.61 Total: 4.33 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -7.41 Total: -114.59 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.08 Total: -39.42 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.44 -0.72 -67.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419468306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.886 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds