Wall clock time and date at job start Wed Apr 1 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.88843 * 2 1 4 4 C 1.54903 * 111.00450 * 236.11206 * 2 1 3 5 5 N 1.47425 * 104.83554 * 204.87986 * 4 2 1 6 6 C 1.34768 * 125.65164 * 204.09681 * 5 4 2 7 7 O 1.21352 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.49451 * 120.00497 * 179.97438 * 6 5 4 9 9 O 1.21354 * 119.99545 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00634 * 179.97438 * 8 6 5 11 11 C 1.46493 * 120.00022 * 179.97438 * 10 8 6 12 12 H 1.08994 * 109.47460 * 35.00372 * 11 10 8 13 13 C 1.53006 * 109.46969 * 155.00473 * 11 10 8 14 14 C 1.50700 * 109.46719 * 294.99717 * 13 11 10 15 15 H 1.07997 * 120.00349 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99911 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99866 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47323 * 120.00073 * 18 16 14 21 21 H 1.48500 * 109.47023 * 240.00031 * 18 16 14 22 22 C 1.50700 * 109.47439 * 274.99982 * 11 10 8 23 23 C 1.38235 * 120.00255 * 139.99887 * 22 11 10 24 24 C 1.38234 * 120.00220 * 179.97438 * 23 22 11 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38238 * 119.99742 * 359.52139 * 25 24 23 27 27 C 1.38234 * 120.00095 * 0.43554 * 26 25 24 28 28 C 1.47024 * 108.70032 * 24.35486 * 5 4 2 29 29 C 1.54338 * 107.26597 * 358.58972 * 28 5 4 30 30 H 1.09003 * 111.00035 * 219.59809 * 29 28 5 31 31 N 1.46897 * 110.51718 * 96.45016 * 29 28 5 32 32 H 1.08996 * 109.47436 * 182.43500 * 1 2 3 33 33 H 1.09010 * 109.47063 * 302.43303 * 1 2 3 34 34 H 1.08997 * 109.47420 * 62.42955 * 1 2 3 35 35 H 1.08999 * 110.36622 * 86.04263 * 4 2 1 36 36 H 1.08998 * 110.36792 * 323.71999 * 4 2 1 37 37 H 0.96998 * 119.99482 * 0.02562 * 10 8 6 38 38 H 1.08995 * 109.47252 * 54.99817 * 13 11 10 39 39 H 1.08998 * 109.47009 * 174.99875 * 13 11 10 40 40 H 0.97000 * 120.00056 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99770 * 0.02562 * 23 22 11 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.08003 * 120.00354 * 180.21032 * 26 25 24 45 45 H 1.08001 * 120.00324 * 179.78922 * 27 26 25 46 46 H 1.08999 * 109.87989 * 118.12938 * 28 5 4 47 47 H 1.08994 * 109.88515 * 239.29858 * 28 5 4 48 48 H 1.00903 * 110.99764 * 66.50178 * 31 29 28 49 49 H 1.00900 * 111.00139 * 190.45458 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7740 6 6 4.4479 -1.5600 -1.5950 7 8 4.3003 -1.4991 -2.7979 8 6 5.7611 -1.9876 -1.0240 9 8 5.9088 -2.0481 0.1790 10 7 6.7814 -2.3061 -1.8450 11 6 8.0688 -2.7247 -1.2852 12 1 7.8995 -3.2990 -0.3744 13 6 8.8105 -3.5918 -2.3045 14 6 8.0413 -4.8675 -2.5328 15 1 7.1159 -5.0421 -2.0041 16 6 8.5185 -5.8113 -3.4174 17 7 9.6451 -5.5985 -4.0616 18 14 7.5647 -7.3923 -3.7009 19 1 6.3401 -7.3890 -2.8610 20 1 7.1833 -7.4903 -5.1327 21 1 8.4129 -8.5546 -3.3339 22 6 8.8970 -1.5071 -0.9646 23 6 9.6518 -1.4698 0.1929 24 6 10.4119 -0.3531 0.4867 25 6 10.4125 0.7286 -0.3740 26 6 9.6608 0.6896 -1.5335 27 6 8.9014 -0.4273 -1.8277 28 6 3.4666 -1.2784 0.6953 29 6 2.0869 -0.8077 1.2021 30 1 2.1900 -0.1704 2.0804 31 7 1.2259 -1.9608 1.4971 32 1 -0.3634 -1.0267 0.0437 33 1 -0.3634 0.5512 0.8674 34 1 -0.3634 0.4756 -0.9109 35 1 2.1554 -0.1716 -2.0838 36 1 1.4522 -1.6703 -1.4024 37 1 6.6634 -2.2574 -2.8065 38 1 8.9015 -3.0491 -3.2454 39 1 9.8040 -3.8296 -1.9247 40 1 9.9810 -6.2626 -4.6837 41 1 9.6484 -2.3133 0.8672 42 1 11.0019 -0.3242 1.3908 43 1 11.0029 1.6027 -0.1424 44 1 9.6638 1.5334 -2.2077 45 1 8.3114 -0.4564 -2.7319 46 1 3.6615 -2.2954 1.0358 47 1 4.2430 -0.6072 1.0622 48 1 1.5844 -2.4891 2.2784 49 1 0.2748 -1.6685 1.6642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419479306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:43 Heat of formation + Delta-G solvation = -41.029148 kcal Electronic energy + Delta-G solvation = -30675.685617 eV Core-core repulsion = 26602.371158 eV Total energy + Delta-G solvation = -4073.314459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.61600 -39.40464 -38.49070 -37.60560 -35.40612 -33.88779 -32.70686 -31.99057 -31.13132 -30.47942 -28.85830 -28.25553 -27.21102 -25.27371 -23.85562 -22.35600 -22.18216 -21.89628 -20.02113 -19.91129 -19.54702 -17.75096 -16.91467 -16.64308 -16.36681 -16.15517 -16.10977 -15.50211 -15.29681 -14.81161 -14.55192 -14.39212 -14.05422 -13.98566 -13.63968 -13.32010 -13.20206 -13.02581 -12.80521 -12.71668 -12.55739 -12.48146 -12.32205 -12.11582 -11.65421 -11.45692 -11.32382 -11.20038 -11.12247 -10.96058 -10.84320 -10.73395 -10.58604 -10.45922 -9.80125 -9.33100 -9.19946 -8.96405 -8.73845 -8.58185 -8.51188 -8.43793 -8.22341 -6.07297 -4.10811 1.72688 1.77723 1.81638 2.58343 3.29908 3.38012 3.43164 3.59793 3.78163 4.09567 4.17715 4.22275 4.38542 4.42878 4.61853 4.87052 5.06489 5.15044 5.21307 5.23662 5.25446 5.30009 5.34209 5.36055 5.45004 5.51056 5.64346 5.68407 5.72298 5.86094 5.87927 5.90467 5.99060 6.09557 6.17057 6.31282 6.39385 6.52262 6.73783 6.81922 6.82090 6.82970 7.05267 7.09940 7.28398 7.37277 7.48420 7.53765 7.75747 7.88827 8.11090 8.25312 8.49142 8.94550 9.54621 11.03246 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007951 B = 0.003777 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.853547 B = 7412.091891 C = 9902.588662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.521 3.479 7 O -0.521 6.521 8 C 0.506 3.494 9 O -0.530 6.530 10 N -0.666 5.666 11 C 0.183 3.817 12 H 0.091 0.909 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.074 4.074 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.124 4.124 27 C -0.108 4.108 28 C 0.120 3.880 29 C 0.075 3.925 30 H 0.058 0.942 31 N -0.840 5.840 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.261 0.739 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.345 0.655 49 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 14.214 11.218 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.004 4.004 5 N -0.325 5.325 6 C 0.305 3.695 7 O -0.397 6.397 8 C 0.286 3.714 9 O -0.407 6.407 10 N -0.316 5.316 11 C 0.080 3.920 12 H 0.109 0.891 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.075 4.075 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.142 4.142 27 C -0.126 4.126 28 C -0.003 4.003 29 C -0.037 4.037 30 H 0.076 0.924 31 N -0.374 5.374 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.159 0.841 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.248 13.832 10.494 21.247 hybrid contribution -0.563 -0.477 0.237 0.775 sum -12.810 13.356 10.731 21.392 Atomic orbital electron populations 1.21685 0.93587 1.02923 1.02048 1.22430 0.96589 0.98702 0.94354 0.89489 1.22290 0.82473 0.98568 0.97091 1.48081 1.11619 1.65249 1.07552 1.20133 0.84801 0.78511 0.86092 1.90757 1.82908 1.51929 1.14084 1.19833 0.84956 0.79526 0.87085 1.90686 1.82963 1.52848 1.14242 1.45832 1.11134 1.63709 1.10905 1.20410 0.80392 0.91182 1.00035 0.89067 1.19421 0.95757 0.93476 0.92750 1.21154 1.07990 1.02153 1.24702 0.92348 1.24973 0.94956 0.98449 0.95663 1.69964 1.20176 1.35319 1.27515 0.86531 0.80096 0.83339 0.78069 1.19696 1.20933 1.20978 1.20487 0.97141 0.95872 0.94009 1.21003 0.96831 0.98100 0.96562 1.21039 0.99625 0.93929 0.99519 1.21010 1.00297 0.98505 0.95339 1.21053 0.97718 0.98144 0.97287 1.20967 0.99109 0.93290 0.99230 1.22165 0.95604 1.03307 0.79247 1.22457 0.92945 0.91467 0.96842 0.92417 1.58730 1.05789 1.24336 1.48512 0.90959 0.92465 0.92036 0.90473 0.90432 0.75026 0.95484 0.94391 0.92889 0.86075 0.86546 0.86788 0.86645 0.86421 0.89832 0.90194 0.84103 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.51 37.16 0.32 -0.56 16 2 C -0.10 -0.83 3.56 -88.47 -0.31 -1.14 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.12 1.35 6.35 -2.53 -0.02 1.34 16 5 N -0.59 -8.45 3.33 -171.03 -0.57 -9.01 16 6 C 0.52 9.19 7.91 -11.59 -0.09 9.10 16 7 O -0.52 -10.20 16.73 5.50 0.09 -10.11 16 8 C 0.51 9.54 7.81 -11.58 -0.09 9.45 16 9 O -0.53 -10.32 13.79 5.49 0.08 -10.24 16 10 N -0.67 -13.00 4.02 -55.37 -0.22 -13.22 16 11 C 0.18 3.76 2.12 -69.08 -0.15 3.61 16 12 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 13 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 14 C -0.52 -14.10 8.84 -34.44 -0.30 -14.41 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.07 -1.37 4.91 -104.62 -0.51 -1.88 16 23 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 28 C 0.12 1.46 5.23 -3.06 -0.02 1.45 16 29 C 0.07 0.63 3.94 -65.87 -0.26 0.37 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 N -0.84 -6.37 8.76 -3.11 -0.03 -6.39 16 32 H 0.07 0.46 6.58 -51.93 -0.34 0.11 16 33 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.41 8.11 8.07 -40.82 -0.33 7.78 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 45 H 0.12 1.98 7.72 -52.49 -0.41 1.57 16 46 H 0.08 1.15 7.61 -51.93 -0.40 0.75 16 47 H 0.08 1.01 7.56 -51.93 -0.39 0.62 16 48 H 0.35 2.34 9.08 -39.29 -0.36 1.98 16 49 H 0.34 1.93 7.01 -39.29 -0.28 1.66 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -31.96 403.29 -9.95 -41.91 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.49 Total: 11.32 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.60 Total: -1.72 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.08 Total: -53.81 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.17 Total: -20.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.96 -9.95 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419479306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.877 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds